BAC Information

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BAC

Clone NameB6Ng01-232E17
Chromosome10 (Build37)
Map Location 79,570,581 - 79,725,968
singlet/doubletdoublet
Overlap geneStk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt
Upstream geneEG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2
Downstream geneDazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-232E17.bB6Ng01-232E17.g
ACCGA044667GA044668
length8851,048
definitionB6Ng01-232E17.b B6Ng01-232E17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,570,581 - 79,571,458)(79,724,927 - 79,725,968)
sequence
ggaattccaccagccatccagctctcagctcagctgcccatactgcgctt
cagtctgtgattccggcagtctgagggaaggtataccctggtcactggtg
ggtatttgtcattttggattggattgtctccagctactatgacagcaagg
acaaaggagctctcccacatgctgtgccagtgagcaagacccagacaagg
cttataacctgtttacactacactgactgtttttaaaatgaatgtcatca
ggctgcagaggttgctcagtggttaagagcactgactgctcttccaaagg
tcctgagttcaattcccagcaaccacatggtggctcacagtcatctgtag
taggatctggtgccctcctctggtgtgtctgaagacaggtacagtgtact
catataaataaaataaatcttaaaaaaaaaaaaaagtaggtctttccact
tcaaaagaaaaaacaaacaaacaaacgtcatctcacagggcagtggtggc
gcataccttccatcccagtactcaggagacagccaggtggatctctgtga
gttcaaggccagcctgggctacatcatgagttccaggacgccagggctac
atcatgagttccaggacgccagggctacatggaggaaagaaagaaagaaa
gaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagagctgggcagtggtggcacatgcctttaatcctagcactcgggaggc
agaggcaggcagattttctgagttcgaggacagcctggtctaaagagtga
gttctaggacagctcagggctacacagagaaaccctgtctcgaaaactga
aaataataatgaaaagaaaagataagaaaagaagt
gaattcagtgggggaagtgctctcctggcaggcacaatgcccaagaccct
tcatgagctgcagaaaccgggcatagcagtacacattgttgatcctggca
ctggagaggtggaggaggcaggatctggaattcgaggtcatccttagctg
tgtgagagtttgaagctatcttgggctacatgagaacctgtttcttccag
aagaccaaagtttgattgtcaggacccaagtgggaaatcacaatgccagt
gactgcgcctcaggtggtgcacagggatgagacaccaagtacattaaaaa
ataaaaaacagcggggcgtggtggcgcaggcctttaatcccagcactcgg
gaggcagaggcaggtgggtttctgagtttgaggccagcctggtctacaaa
gtgagctccaggacagccagagctataaagagaaaccctgtctcgacaaa
ccaaaaaataaaataaataaaaaaacaaaccaaaactcccaaaagtgcta
actgttgcggttctaaattggagccctggtctccactcctgtttttagca
gttttccccacctgtaaaatgagggcaccaacagttattgctgtaacatc
ttctaaggattaagagtgtcactgcttttccagcagttcttagaaaaatc
atcagatcgctacacctaacatgtccaagtgacccagtagtaagctagag
ctgctgaatgacaggtatggattagagcagctgagagagggccggcttct
tggacctcaccaggccaatgaatgtctaaacttgaggcattcagccaggc
atggtggcatacgcctttaaatcccagcagttcagaggtagaatcaggca
gaaatctgtgagttcgcggccaacttgttctcaatagcaagctccaggcc
agttcaggagcttcctgtctctaaataaacggataaatagaaataaaaaa
atcaacttggggccggcctggtggcgcacgcctttaaatcccggcactgg
gggagcagaggcagggtggaagttctgtagttcgaggctagcctggtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_79570581_79571458
seq2: B6Ng01-232E17.b_45_929

seq1  GGAATTCCACCAGCCATCCAGCTCTCAGCTCAGCTGCCCATACTGCGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTCCACCAGCCATCCAGCTCTCAGCTCAGCTGCCCATACTGCGCTT  50

seq1  CAGTCTGTGATTCCGGCAGTCTGAGGGAAGGTATACCCTGGTCACTGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGTGATTCCGGCAGTCTGAGGGAAGGTATACCCTGGTCACTGGTG  100

seq1  GGTATTTGTCATTTTGGATTGGATTGTCTCCAGCTACTATGACAGCAAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTTGTCATTTTGGATTGGATTGTCTCCAGCTACTATGACAGCAAGG  150

seq1  ACAAAGGAGCTCTCCCACATGCTGTGCCAGTGAGCAAGACCCAGACAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGGAGCTCTCCCACATGCTGTGCCAGTGAGCAAGACCCAGACAAGG  200

seq1  CTTATAACCTGTTTACACTACACTGACTGTTTTTAAAATGAATGTCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAACCTGTTTACACTACACTGACTGTTTTTAAAATGAATGTCATCA  250

seq1  GGCTGCAGAGGTTGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAAAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAGAGGTTGCTCAGTGGTTAAGAGCACTGACTGCTCTTCCAAAGG  300

seq1  TCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAGTCATCTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAGTCATCTGTAG  350

seq1  TAGGATCTGGTGCCCTCCTCTGGTGTGTCTGAAGACAGGTACAGTGTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGATCTGGTGCCCTCCTCTGGTGTGTCTGAAGACAGGTACAGTGTACT  400

seq1  CATATAAATAAAATAAATCTTAAAAAAAAAAAAAAGTAGGTCTTTCCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAATAAAATAAATCTTAAAAAAAAAAAAAAGTAGGTCTTTCCACT  450

seq1  TCAAAAGAAAAAACAAACAAACAAACGTCATCTCACAGGGCAGTGGTGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGAAAAAACAAACAAACAAACGTCATCTCACAGGGCAGTGGTGGC  500

seq1  GCATACCTTCCATCCCAGTACTCAGGAGACAGCCAGGTGGATCTCTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACCTTCCATCCCAGTACTCAGGAGACAGCCAGGTGGATCTCTGTGA  550

seq1  GTTCAAGGCCAGCCTGGGCTACATCATGAGTTCCAGGACGCCAGGGCTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAAGGCCAGCCTGGGCTACATCATGAGTTCCAGGACGCCAGGGCTAC  600

seq1  ATCATGAGTTCCAGGACGCCAGGGCTACATGGAG----GAAAGAAAGAAA  646
      ||||||||||||||||||||||||||||||||||    ||||||||||||
seq2  ATCATGAGTTCCAGGACGCCAGGGCTACATGGAGGAAAGAAAGAAAGAAA  650

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  700

seq1  AAGAGCTGGGCAGTGGTGGCACATGCCTTTAATCCTAGCACTCGGGAGGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCTGGGCAGTGGTGGCACATGCCTTTAATCCTAGCACTCGGGAGGC  750

seq1  AGAGGCAGGCAGA-TTTCTGAGTTCGAGGACAGCCTGGTCTAAAGAGTGA  795
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGGCAGATTTTCTGAGTTCGAGGACAGCCTGGTCTAAAGAGTGA  800

seq1  GTTCTAGGACAGC-CAGGGCTACACAGAGAAACCCTGTCTCGAAAAACAG  844
      ||||||||||||| |||||||||||||||||||||||||||| ||||| |
seq2  GTTCTAGGACAGCTCAGGGCTACACAGAGAAACCCTGTCTCG-AAAACTG  849

seq1  AAA--AAAAAAGAAAAGAAAAGAAAAGAAAAGAAGT  878
      |||  || || |||||||||||| ||||||||||||
seq2  AAAATAATAATGAAAAGAAAAGATAAGAAAAGAAGT  885

seq1: chr10_79724927_79725968
seq2: B6Ng01-232E17.g_67_1114 (reverse)

seq1  GACCAGGCTGGCCTCGAACT-CAGAAC-TCCA-CCTGCCTCTGCCTCCCC  47
      ||||||||| |||||||||| |||||| |||| |||||||||||  ||||
seq2  GACCAGGCTAGCCTCGAACTACAGAACTTCCACCCTGCCTCTGCTCCCCC  50

seq1  AGTGCCGGGA-TTAAAGGCGTGCGCCACCAGGCCCGGCCCAAGTTGATTT  96
      |||||||||| ||||||||||||||||||||||| | |||||||||||||
seq2  AGTGCCGGGATTTAAAGGCGTGCGCCACCAGGCCGGCCCCAAGTTGATTT  100

seq1  TTTTATTTCTATTTATCCGTTTATTTAGAGACAGG-AGCTCCTG-ACTGG  144
      ||||||||||||||||||||||||||||||||||| |||||||| |||||
seq2  TTTTATTTCTATTTATCCGTTTATTTAGAGACAGGAAGCTCCTGAACTGG  150

seq1  CCTGGAGCTTGCTATTGAGAACAAGTTGGCCGCGAACTCACAGATTTCTG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGCTTGCTATTGAGAACAAGTTGGCCGCGAACTCACAGATTTCTG  200

seq1  CCTGATTCTACCTCTGAACTGCTGGGATTTAAAGGCGTATGCCACCATGC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGATTCTACCTCTGAACTGCTGGGATTTAAAGGCGTATGCCACCATGC  250

seq1  CTGGCTGAATGCCTCAAGTTTAGACATTCATTGGCCTGGTGAGGTCCAAG  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGAATGCCTCAAGTTTAGACATTCATTGGCCTGGTGAGGTCCAAG  300

seq1  AAGCCGGCCCTCTCTCAGCTGCTCTAATCCATACCTGTCATTCAGCAGCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCGGCCCTCTCTCAGCTGCTCTAATCCATACCTGTCATTCAGCAGCT  350

seq1  CTAGCTTACTACTGGGTCACTTGGACATGTTAGGTGTAGCGATCTGATGA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTACTACTGGGTCACTTGGACATGTTAGGTGTAGCGATCTGATGA  400

seq1  TTTTTCTAAGAACTGCTGGAAAAGCAGTGACACTCTTAATCCTTAGAAGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAAGAACTGCTGGAAAAGCAGTGACACTCTTAATCCTTAGAAGA  450

seq1  TGTTACAGCAATAACTGTTGGTGCCCTCATTTTACAGGTGGGGAAAACTG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACAGCAATAACTGTTGGTGCCCTCATTTTACAGGTGGGGAAAACTG  500

seq1  CTAAAAACAGGAGTGGAGACCAGGGCTCCAATTTAGAACCGCAACAGTTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAACAGGAGTGGAGACCAGGGCTCCAATTTAGAACCGCAACAGTTA  550

seq1  GCACTTTTGGGAGTTTTGGTTTGTTTTTTTATTTATTTTATTTTTTGGTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTTTGGGAGTTTTGGTTTGTTTTTTTATTTATTTTATTTTTTGGTT  600

seq1  TGTCGAGACAGGGTTTCTCTTTATAGCTCTGGCTGTCCTGGAGCTCACTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGAGACAGGGTTTCTCTTTATAGCTCTGGCTGTCCTGGAGCTCACTT  650

seq1  TGTAGACCAGGCTGGCCTCAAACTCAGAAACCCACCTGCCTCTGCCTCCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGCCTCAAACTCAGAAACCCACCTGCCTCTGCCTCCC  700

seq1  GAGTGCTGGGATTAAAGGCCTGCGCCACCACGCCCCGCTGTTTTTTATTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTGGGATTAAAGGCCTGCGCCACCACGCCCCGCTGTTTTTTATTT  750

seq1  TTTAATGTACTTGGTGTCTCATCCCTGTGCACCACCTGAGGCGCAGTCAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTACTTGGTGTCTCATCCCTGTGCACCACCTGAGGCGCAGTCAC  800

seq1  TGGCATTGTGATTTCCCACTTGGGTCCTGACAATCAAACTTTGGTCTTCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATTGTGATTTCCCACTTGGGTCCTGACAATCAAACTTTGGTCTTCT  850

seq1  GGAAGAAACAGGTTCTCATGTAGCCCAAGATAGCTTCAAACTCTCACACA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAACAGGTTCTCATGTAGCCCAAGATAGCTTCAAACTCTCACACA  900

seq1  GCTAAGGATGACCTCGAATTCCAGATCCTGCCTCCTCCACCTCTCCAGTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGGATGACCTCGAATTCCAGATCCTGCCTCCTCCACCTCTCCAGTG  950

seq1  CCAGGATCAACAATGTGTACTGCTATGCCCGGTTTCTGCAGCTCATGAAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGATCAACAATGTGTACTGCTATGCCCGGTTTCTGCAGCTCATGAAG  1000

seq1  GGTCTTGGGCATTGTGCCTGCCAGGAGAGCACTTCCCCCACTGAATTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTGGGCATTGTGCCTGCCAGGAGAGCACTTCCCCCACTGAATTC  1048