BAC Information

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BAC

Clone NameB6Ng01-234J18
Chromosome10 (Build37)
Map Location 114,129,455 - 114,267,929
singlet/doubletdoublet
Overlap geneTrhde, 4930473D10Rik
Upstream geneLOC100042666
Downstream geneTph2, Tbc1d15, LOC668041, Rab21, Tmem19, Thap2, Ccdc131, Lgr5, A930009A15Rik, LOC668071, EG668073, Tspan8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234J18.bB6Ng01-234J18.g
ACCGA046323GA046324
length1,077784
definitionB6Ng01-234J18.b B6Ng01-234J18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,129,455 - 114,130,522)(114,267,144 - 114,267,929)
sequence
gaattccgattcattcatttttatttacatgatctagtcacattattcag
ttaccaaatcccttaatttcttcctctggaaaattagaaaatgataaata
ctacttcaaaaggtcatgataacaactaaatgggtaaaaatgtacaaaga
gctcttaagaataactcacatttcataaacaaaaaagttgccatttttgt
catttatatgatctatctgtaatatgaaagataactatgtaatatgtaat
tatatataaaataaatatataatatatatgtctgcaatgtgatttatagt
gagcacttcaagtgctcacaaaaataggacgcacagttataagaagtgtt
gtattataaccaagcttaccctaatgtgttgtgtaataccaagaagtaaa
atatctacgtacctcatacaaagagttttaattactcatcttagagatct
taaaaccagtcatactgtgtacactcttggcttatgttggctttaaaaca
ataaataaatatctttgtttatcaagaagaataaactggcatcctaacct
aacaagaagcagtagaattcatctcaaggaactctcccataagctactcg
gtgtgaaaactcaaatccttagatagatcagctctcatgagctgtaccac
agtaaacaaagggaaactgttcagcatttgaaatgaatgagagcataagt
gagaagtccagaaataatatagtgaaaagtaaaacagataaaatggcttc
aaataaaaaataagaaaataagaaaaatcccatccgggtatagcgactat
gtctgcaaccttaggacttgggatatttgaggaagggggatcatagtgag
ataggacactgcctaacccatatgctgtgctaggtctgtttgggactctc
aaagagttcggggcagtggaagctttatcttggcctcctgagctgcctag
cttctaccccactgcacccagacagaatgcccagccctttcctagctctc
tggcttgaactggttggcctcttttacactttcaaacacttctagaaagc
ctctacgttcaaactcttaggcacttg
gaattcaaaatccttgctatggaacacagtgtgatatttttctttgtaga
tacagagtccattttaggatggtcctgaactattgtgtaaacaataaatc
tcatgatactaggttatactgtgtagatgagcgttctcttatgtgaagac
tgagaataccaatttcaagaatatcttcattataattacacacatgaaaa
tgatgatttacagcttaattttcaatagatttagaacaccggtattatta
tctatgtatctatctttctatctaccacgtattacccacctgtctgccta
cttatcatctgtctgtctgcttttctctctctctctaaacacacacacac
acacacacacacacacacacacacttctctttctccactaatatcccact
ctcttcccagtggtttgttctctataacaaactgtcctttggaacagtaa
ggaacaagtgcataatgacttaggaaaagcattttgtgaggttgattttt
atgtttatgtatgtgaaaacatacactgataagcatattagtgtttggtt
taagtatttagttctatcaatttgataatcacacacacacatgcacgcac
acgctcacactcgcacacacagacacactcagacgctcgccctgtcctca
ttttacctttacaaatatttccaaactaccatgattcagatactcatggg
ccgttaataaacatctatctagatctgtatctgaatctatccatacctat
ctttttgggaagtggataaataacttgataatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_114129455_114130522
seq2: B6Ng01-234J18.b_42_1117

seq1  GAATTCCAAATTCATTCATTTTTATTTACATGATCTAGTCACATTATTCA  50
      |||||||  |||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCC-GATTCATTCATTTTTATTTACATGATCTAGTCACATTATTCA  49

seq1  GTTACCAAATCCCTTAATTTCTTCCTCTGGAAAATTAGAAAATGATAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCAAATCCCTTAATTTCTTCCTCTGGAAAATTAGAAAATGATAAAT  99

seq1  ACTACTTCAAAAGGTCATGATAACAACTAAATGGGTAAAAATGTACAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTCAAAAGGTCATGATAACAACTAAATGGGTAAAAATGTACAAAG  149

seq1  AGCTCTTAAGAATAACTCACATTTCATAAACAAAAAAGTTGCCATTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTAAGAATAACTCACATTTCATAAACAAAAAAGTTGCCATTTTTG  199

seq1  TCATTTATATGATCTATCTGTAATATGAAAGATAACTATGTAATATGTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTATATGATCTATCTGTAATATGAAAGATAACTATGTAATATGTAA  249

seq1  TTATATATAAAATAAATATATAATATATATGTCTGCAATGTGATTTATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATATAAAATAAATATATAATATATATGTCTGCAATGTGATTTATAG  299

seq1  TGAGCACTTCAAGTGCTCACAAAAATAGGACGCACAGTTATAAGAAGTGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACTTCAAGTGCTCACAAAAATAGGACGCACAGTTATAAGAAGTGT  349

seq1  TGTATTATAACCAAGCTTACCCTAATGTGTTGTGTAATACCAAGAAGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTATAACCAAGCTTACCCTAATGTGTTGTGTAATACCAAGAAGTAA  399

seq1  AATATCTACGTACCTCATACAAAGAGTTTTAATTACTCATCTTAGAGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCTACGTACCTCATACAAAGAGTTTTAATTACTCATCTTAGAGATC  449

seq1  TTAAAACCAGTCATACTGTGTACACTCTTGGCTTATGTTGGCTTTAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAACCAGTCATACTGTGTACACTCTTGGCTTATGTTGGCTTTAAAAC  499

seq1  AATAAATAAATATCTTTGTTTATCAAGAAGAATAAACTGGCATCCTAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATATCTTTGTTTATCAAGAAGAATAAACTGGCATCCTAACC  549

seq1  TAACAAGAAGCAGTAGAATTCATCTCAAGGAACTCTCCCATAAGCTACTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAGAAGCAGTAGAATTCATCTCAAGGAACTCTCCCATAAGCTACTC  599

seq1  GGTGTGAAAACTCAAATCCTTAGATAGATCAGCTCTCATGAGCTGTACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGAAAACTCAAATCCTTAGATAGATCAGCTCTCATGAGCTGTACCA  649

seq1  CAGTAAACAAAGGGAAACTGTTCAGCATTTGAAATGAATGAGAGCATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAAACAAAGGGAAACTGTTCAGCATTTGAAATGAATGAGAGCATAAG  699

seq1  TGAGAAGTCCAGAAATAATATAGTGAAAAGTAAAACAGATAAAATGGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAGTCCAGAAATAATATAGTGAAAAGTAAAACAGATAAAATGGCTT  749

seq1  CAAATAAAAAATAAGAAAATAAGAAAAATCCAATCCGGGTATAGCGACTA  800
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CAAATAAAAAATAAGAAAATAAGAAAAATCCCATCCGGGTATAGCGACTA  799

seq1  TGTCTGCAACCTTAGGACTTGGGATA-TTGAGGAA-GGGGATCATAGTGA  848
      |||||||||||||||||||||||||| |||||||| ||||||||||||||
seq2  TGTCTGCAACCTTAGGACTTGGGATATTTGAGGAAGGGGGATCATAGTGA  849

seq1  GATAGGACACTGCCT-AGCCATATGCTGTGCTAGGTCTGTTT-GGACTCT  896
      ||||||||||||||| | |||||||||||||||||||||||| |||||||
seq2  GATAGGACACTGCCTAACCCATATGCTGTGCTAGGTCTGTTTGGGACTCT  899

seq1  CAAAGAG-TCGGGGCAGTGGAAGC-TTATCTTGGCCTCCTGAGCTGCCTT  944
      ||||||| |||||||||||||||| ||||||||||||||||||||||| |
seq2  CAAAGAGTTCGGGGCAGTGGAAGCTTTATCTTGGCCTCCTGAGCTGCC-T  948

seq1  AGCTTCTACCCCACTGCACCCAGGACAGAATGCCCAGCCCTTTCCTAGCT  994
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AGCTTCTACCCCACTGCACCCA-GACAGAATGCCCAGCCCTTTCCTAGCT  997

seq1  CTCTTGCTTGAACTGGTT-GCCTCTTTACCAC-TTCAAACACTTC-AGAA  1041
      |||| ||||||||||||| ||||||||  ||| |||||||||||| ||||
seq2  CTCTGGCTTGAACTGGTTGGCCTCTTTTACACTTTCAAACACTTCTAGAA  1047

seq1  AG-CTCTAAGTTCAAACTC-TAGGCACTT  1068
      || ||||| |||||||||| |||||||||
seq2  AGCCTCTACGTTCAAACTCTTAGGCACTT  1076

seq1: chr10_114267144_114267929
seq2: B6Ng01-234J18.g_64_847 (reverse)

seq1  ATATTATCAAGTTATTTAT-CAAATCTCAAAAATATAGGTATAGATAGAT  49
      ||||||||||||||||||| ||  || |||||| |||||||| |||||||
seq2  ATATTATCAAGTTATTTATCCACTTCCCAAAAAGATAGGTATGGATAGAT  50

seq1  TCAGATACAGATCTAGATAGATGTTTATTAACTGGCCCATGAGTATCTGA  99
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCAGATACAGATCTAGATAGATGTTTATTAAC-GGCCCATGAGTATCTGA  99

seq1  ATCATTGGTAGTTTGGAAATATTTTTAAAAGCTAAAATGAGGGCAGGGTG  149
      |||| ||||||||||||||||||| | |||| |||||||||| ||||| |
seq2  ATCA-TGGTAGTTTGGAAATATTTGT-AAAGGTAAAATGAGGACAGGGCG  147

seq1  AGTGTCTGTGTGTGTTTGTGTGTGCGTGTGTGTGCGTGTGCGTGTATGTG  199
      || ||||| |||||| |||||||||| ||||| ||||||||||| |||||
seq2  AGCGTCTGAGTGTGTCTGTGTGTGCGAGTGTGAGCGTGTGCGTGCATGTG  197

seq1  TGTGTGTGTTTATCAAACTAATAGAACTAAATACTTAAACCAAACACTAA  249
      |||||||| |||||||| | ||||||||||||||||||||||||||||||
seq2  TGTGTGTGATTATCAAATTGATAGAACTAAATACTTAAACCAAACACTAA  247

seq1  TATGCTTATCAATGTATGTTTTCACATACATAAAAAAAAAAATCAACCTC  299
      ||||||||||| |||||||||||||||||||||| | |||||||||||||
seq2  TATGCTTATCAGTGTATGTTTTCACATACATAAACATAAAAATCAACCTC  297

seq1  ACAAAATGCTTTTCCTAAGTCATTATGCACTTGTTCCCTACTGTTCCAAA  349
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ACAAAATGCTTTTCCTAAGTCATTATGCACTTGTTCCTTACTGTTCCAAA  347

seq1  GGACAGTTTGTTATAGAGAACAAACCACTGGGAAGAGAGTGGGATATTAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTTTGTTATAGAGAACAAACCACTGGGAAGAGAGTGGGATATTAG  397

seq1  TGGAGAAAGAGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAAGAGAAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTT  447

seq1  TAGAGAGAGAGAGAAAAGCAGACAGACAGATGATAAGTAGGCAGACAGGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGAGAGAGAAAAGCAGACAGACAGATGATAAGTAGGCAGACAGGT  497

seq1  GGGTAATACGTGGTAGATAGAAAGATAGATACATAGATAATAATACTGGT  549
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGGTAATACGTGGTAGATAGAAAGATAGATACATAGATAATAATACCGGT  547

seq1  GTTCTAAATCTATTGAAAATTAAGCTCTAAATCATCATTCTCATGTGTGT  599
      |||||||||||||||||||||||||| |||||||||||| ||||||||||
seq2  GTTCTAAATCTATTGAAAATTAAGCTGTAAATCATCATTTTCATGTGTGT  597

seq1  AATTATAATGAAGATATTCTTGAAATTGGTCTTCTCAGTCTTCACATAAG  649
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AATTATAATGAAGATATTCTTGAAATTGGTATTCTCAGTCTTCACATAAG  647

seq1  AGAACGCTCATCTACACAGTATAACCTAGTATCATGAGACTTATTGTTTA  699
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGAACGCTCATCTACACAGTATAACCTAGTATCATGAGATTTATTGTTTA  697

seq1  CACAATAGTTCAGGACCATCCTAAAATGGACTCTGTATCTACAAAGAAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAGTTCAGGACCATCCTAAAATGGACTCTGTATCTACAAAGAAAA  747

seq1  ATATCACACTGTGTTCCATAGCAAGGATTTTGAATTC  786
      |||||||||||||||||||||||||||||||||||||
seq2  ATATCACACTGTGTTCCATAGCAAGGATTTTGAATTC  784