BAC Information

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BAC

Clone NameB6Ng01-234O17
Chromosome10 (Build37)
Map Location 65,375,010 - 65,492,718
singlet/doubletdoublet
Overlap genenone
Upstream geneCtnna3, LOC665206, LOC216036
Downstream gene1700023F02Rik, 4930407I19Rik, Reep3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-234O17.bB6Ng01-234O17.g
ACCGA046536GA046537
length1,2011,187
definitionB6Ng01-234O17.b B6Ng01-234O17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,491,510 - 65,492,718)(65,375,010 - 65,376,196)
sequence
gaattcacggagtcacttgaatttgtgggtttacagtgctcatcctattc
agaaaaattaccccattatcatttgaaggatgattccccttatttttctc
ttctagtttttatattttatattatctcatattataatactcgtagtcat
atatcaggttgcctgaaaaatttgtcatagtatacagagaacttgttcat
attaagtgtattttttattttctattttcttttcctcatgacttctgaca
gcaagggactgacggatggtgttcttcagcaaggcgaagaaagagaaatc
accgcacagggttcccagttgcttctgtttctttaggagagaattgcaat
gtgttttctttaagtttggaccaattctatttcattcacttgaatgtaat
gtgtctggacataagttattagaggagaggtgactcatttaacaggctta
ctgtgtgaaacatcagctaagggatctgtgacacacacagatgcagaaat
gcatctgttttagttaaaaagactaattgacatatattttcaagttatat
gatggacatacttcaaataatcccaagagaacccaataaaataaactttt
atgactacagtataatctgtgacataattaacatagcatagagatattat
acaagaaaataagaccacctatgtcccctttaacagcagtgacaaaagag
gaaatcagaaagattgaaggggtgagatagataagaatgggttctctttt
gctaagatgcaggttactggtttcaaggtctgagtgtaaggctgaggaac
taaggggattttcaagatcatatgtgggaaagttggaagaagaggctagc
aaacaagcaaaaagttgtcatctatacttacagtaacaggttagtgacaa
tgagagtagaaagaatgttatatctctccaattcctaatataaaaacaac
atgaaggctagtcttggttatcaacttactatatctgaaattaactacag
tcaacatatctgggtacacctgtgatgtaattgtcttaattttatcactg
aacaggaagaaccatattaccctgatctttgagaatagaagatctgcctt
tagtttggccacaccatctgggtggcaaggctataaaggaacgtggaaga
aaacggatgcttgctgcaatgcctgtctttttctggtagttacacccctt
c

gaattctccacctctgccagttttaaaacaggccttgtcctgtgcagaat
aaaacaagtcttaatatagctgtgttttattggtaaattctaaaataaag
agtagaaagcagatggaattactgtgatatccaaagctgagcaatgtcat
aaaggtccaaaataagcaataatgattactaaatgcgaataaccaaagtc
atgcatttaataccttacttctctgtgcactaagcttgagaagacactct
gtgctttagcaagcccaggtatcatccactatgcctcacctgtttctagt
ggaagcatttttttttcaaatatcattaaataaattttaactttagtttc
aagcaacattattagtatttctagactgtgcatctcctttgcccggctca
aaaatgactcagaatataactccaagttatcaagcttgggaaattgaaat
ggaaattcagacgtgggcgttttcagtgtggttaggaagcatgcaattga
aattgaatgctcagcagtaaacagtaccggagccagaggccttttgaatt
ttcattacgaaattcacgtaaatgattaaagcatttgcagatagggtctt
ctctttccttcatcaataagagcagcatttggaggtatttaattttgaac
caaaaaggcaatggcattcacaatgcagaatctatgatgtttaggagtgt
gacagacacaggatttgtattgtggtttatacatgaaggaaacatggggc
agtaaatactgagatgaaagggaaaggctttaagcatttagggggaacaa
tgttcatttgatcttcaattttaaaacttctaaactttatttagcatggt
gttccgttgctatgtttggttttagacacaaatatacttgagccacacag
acaggaaatgtgggaagctctggtattgatttcaggagatttcttgtctt
gtgtataagtagaaaatgtctccaaactacaaagatctatttgatacagt
ggccggaaatgtaatttatcaagatttatgatatttaactactcctgaga
ctttcaaagaagtattgcaacggaaaggcccactgacttggtgcttcatg
taagaaggcttatgctaagatgcacaagactctctcacttggcacacagg
tacagaggtggatggtaaggcccacaattcctttgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_65491510_65492718
seq2: B6Ng01-234O17.b_46_1246 (reverse)

seq1  GAAGGGGTGGACTTACCAGAAAAAGCAAGAGCA-TGCAGGCAAAAGCAAA  49
      ||||||||| |  ||||||||||||  || ||| |||||    ||||   
seq2  GAAGGGGTGTAACTACCAGAAAAAGACAG-GCATTGCAG---CAAGC---  43

seq1  ATCGTTCTTCTTCCACG-TCCTTTATAGGC-TGCCA-CCAGATGGTGTGG  96
      |||  | |||||||||| |||||||||| | ||||| |||||||||||||
seq2  ATCCGTTTTCTTCCACGTTCCTTTATAGCCTTGCCACCCAGATGGTGTGG  93

seq1  CCCAAACTAAAGGCAGATCTTCCTATCTCAAAAGATCCAGGGTAATATGG  146
       |||||||||||||||||||||   |||| |||||| |||||||||||||
seq2  -CCAAACTAAAGGCAGATCTTCTATTCTC-AAAGAT-CAGGGTAATATGG  140

seq1  GTCTTCCTGTTCCAGGTGATAAAATTAAGACAATTACATCACAGGTGTAC  196
       |||||||||||   |||||||||||||||||||||||||||||||||||
seq2  TTCTTCCTGTTC--AGTGATAAAATTAAGACAATTACATCACAGGTGTAC  188

seq1  CCAGATATGTTGACTGTAGTTAATTTCAGATATAGTAAGTTGATAACCAA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATATGTTGACTGTAGTTAATTTCAGATATAGTAAGTTGATAACCAA  238

seq1  GACTAGCCTTCATGTTGTTTTTATATTAGGAATTGGAGAGATATAACATT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGCCTTCATGTTGTTTTTATATTAGGAATTGGAGAGATATAACATT  288

seq1  CTTTCTACTCTCATTGTCACTAACCTGTTACTGTAAGTATAGATGACAAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTACTCTCATTGTCACTAACCTGTTACTGTAAGTATAGATGACAAC  338

seq1  TTTTTGCTTGTTTGCTAGCCTCTTCTTCCAACTTTCCCACATATGATCTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGCTTGTTTGCTAGCCTCTTCTTCCAACTTTCCCACATATGATCTT  388

seq1  GAAAATCCCCTTAGTTCCTCAGCCTTACACTCAGACCTTGAAACCAGTAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATCCCCTTAGTTCCTCAGCCTTACACTCAGACCTTGAAACCAGTAA  438

seq1  CCTGCATCTTAGCAAAAGAGAACCCATTCTTATCTATCTCACCCCTTCAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCATCTTAGCAAAAGAGAACCCATTCTTATCTATCTCACCCCTTCAA  488

seq1  TCTTTCTGATTTCCTCTTTTGTCACTGCTGTTAAAGGGGACATAGGTGGT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTGATTTCCTCTTTTGTCACTGCTGTTAAAGGGGACATAGGTGGT  538

seq1  CTTATTTTCTTGTATAATATCTCTATGCTATGTTAATTATGTCACAGATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTTCTTGTATAATATCTCTATGCTATGTTAATTATGTCACAGATT  588

seq1  ATACTGTAGTCATAAAAGTTTATTTTATTGGGTTCTCTTGGGATTATTTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGTAGTCATAAAAGTTTATTTTATTGGGTTCTCTTGGGATTATTTG  638

seq1  AAGTATGTCCATCATATAACTTGAAAATATATGTCAATTAGTCTTTTTAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGTCCATCATATAACTTGAAAATATATGTCAATTAGTCTTTTTAA  688

seq1  CTAAAACAGATGCATTTCTGCATCTGTGTGTGTCACAGATCCCTTAGCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACAGATGCATTTCTGCATCTGTGTGTGTCACAGATCCCTTAGCTG  738

seq1  ATGTTTCACACAGTAAGCCTGTTAAATGAGTCACCTCTCCTCTAATAACT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTCACACAGTAAGCCTGTTAAATGAGTCACCTCTCCTCTAATAACT  788

seq1  TATGTCCAGACACATTACATTCAAGTGAATGAAATAGAATTGGTCCAAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCCAGACACATTACATTCAAGTGAATGAAATAGAATTGGTCCAAAC  838

seq1  TTAAAGAAAACACATTGCAATTCTCTCCTAAAGAAACAGAAGCAACTGGG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAAACACATTGCAATTCTCTCCTAAAGAAACAGAAGCAACTGGG  888

seq1  AACCCTGTGCGGTGATTTCTCTTTCTTCGCCTTGCTGAAGAACACCATCC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTGCGGTGATTTCTCTTTCTTCGCCTTGCTGAAGAACACCATCC  938

seq1  GTCAGTCCCTTGCTGTCAGAAGTCATGAGGAAAAGAAAATAGAAAATAAA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTCCCTTGCTGTCAGAAGTCATGAGGAAAAGAAAATAGAAAATAAA  988

seq1  AAATACACTTAATATGAACAAGTTCTCTGTATACTATGACAAATTTTTCA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACACTTAATATGAACAAGTTCTCTGTATACTATGACAAATTTTTCA  1038

seq1  GGCAACCTGATATATGACTACGAGTATTATAATATGAGATAATATAAAAT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACCTGATATATGACTACGAGTATTATAATATGAGATAATATAAAAT  1088

seq1  ATAAAAACTAGAAGAGAAAAATAAGGGGAATCATCCTTCAAATGATAATG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAACTAGAAGAGAAAAATAAGGGGAATCATCCTTCAAATGATAATG  1138

seq1  GGGTAATTTTTCTGAATAGGATGAGCACTGTAAACCCACAAATTCAAGTG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATTTTTCTGAATAGGATGAGCACTGTAAACCCACAAATTCAAGTG  1188

seq1  ACTCCGTGAATTC  1209
      |||||||||||||
seq2  ACTCCGTGAATTC  1201


seq1: chr10_65375010_65376196
seq2: B6Ng01-234O17.g_65_1251

seq1  GAATTCTCCACCTCTGCCAGTTTTAAAACAGGCCTTGTCCTGTGCAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCACCTCTGCCAGTTTTAAAACAGGCCTTGTCCTGTGCAGAAT  50

seq1  AAAACAAGTCTTAATATAGCTGTGTTTTATTGGTAAATTCTAAAATAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGTCTTAATATAGCTGTGTTTTATTGGTAAATTCTAAAATAAAG  100

seq1  AGTAGAAAGCAGATGGAATTACTGTGATATCCAAAGCTGAGCAATGTCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAAGCAGATGGAATTACTGTGATATCCAAAGCTGAGCAATGTCAT  150

seq1  AAAGGTCCAAAATAAGCAATAATGATTACTAAATGCGAATAACCAAAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTCCAAAATAAGCAATAATGATTACTAAATGCGAATAACCAAAGTC  200

seq1  ATGCATTTAATACCTTACTTCTCTGTGCACTAAGCTTGAGAAGACACTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATTTAATACCTTACTTCTCTGTGCACTAAGCTTGAGAAGACACTCT  250

seq1  GTGCTTTAGCAAGCCCAGGTATCATCCACTATGCCTCACCTGTTTCTAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTTAGCAAGCCCAGGTATCATCCACTATGCCTCACCTGTTTCTAGT  300

seq1  GGAAGCATTTTTTTTTCAAATATCATTAAATAAATTTTAACTTTAGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCATTTTTTTTTCAAATATCATTAAATAAATTTTAACTTTAGTTTC  350

seq1  AAGCAACATTATTAGTATTTCTAGACTGTGCATCTCCTTTGCCCGGCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAACATTATTAGTATTTCTAGACTGTGCATCTCCTTTGCCCGGCTCA  400

seq1  AAAATGACTCAGAATATAACTCCAAGTTATCAAGCTTGGGAAATTGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGACTCAGAATATAACTCCAAGTTATCAAGCTTGGGAAATTGAAAT  450

seq1  GGAAATTCAGACGTGGGCGTTTTCAGTGTGGTTAGGAAGCATGCAATTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATTCAGACGTGGGCGTTTTCAGTGTGGTTAGGAAGCATGCAATTGA  500

seq1  AATTGAATGCTCAGCAGTAAACAGTACCGGAGCCAGAGGCCTTTTGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATGCTCAGCAGTAAACAGTACCGGAGCCAGAGGCCTTTTGAATT  550

seq1  TTCATTACGAAATTCACGTAAATGATTAAAGCATTTGCAGATAGGGTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTACGAAATTCACGTAAATGATTAAAGCATTTGCAGATAGGGTCTT  600

seq1  CTCTTTCCTTCATCAATAAGAGCAGCATTTGGAGGTATTTAATTTTGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCTTCATCAATAAGAGCAGCATTTGGAGGTATTTAATTTTGAAC  650

seq1  CAAAAAGGCAATGGCATTCACAATGCAGAATCTATGATGTTTAGGAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAGGCAATGGCATTCACAATGCAGAATCTATGATGTTTAGGAGTGT  700

seq1  GACAGACACAGGATTTGTATTGTGGTTTATACATGAAGGAAACATGGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGACACAGGATTTGTATTGTGGTTTATACATGAAGGAAACATGGGGC  750

seq1  AGTAAATACTGAGATGAAAGGGAAAGGCTTTAAGCATTTAGGGGGAACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAATACTGAGATGAAAGGGAAAGGCTTTAAGCATTTAGGGGGAACAA  800

seq1  TGTTCATTTGATCTTCAATTTTAAAACTTCTAAACTTTATTTAGCATGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTTGATCTTCAATTTTAAAACTTCTAAACTTTATTTAGCATGGT  850

seq1  GTTCCGTTGCTATGTTTGGTTTTAGACACAAATATACTTGAGCCACACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCGTTGCTATGTTTGGTTTTAGACACAAATATACTTGAGCCACACAG  900

seq1  ACAGGAAATGTGGGAAGCTCTGGTATTGATTTCAGGAGATTTCTTGTCTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAATGTGGGAAGCTCTGGTATTGATTTCAGGAGATTTCTTGTCTT  950

seq1  GTGTATAAGTAGAAAAATGTCTCCAAACTACAAAAGAATCTATTTGATAA  1000
      |||||||||||| |||||||||||||||||||||   ||||||||||| |
seq2  GTGTATAAGTAG-AAAATGTCTCCAAACTACAAA--GATCTATTTGAT-A  996

seq1  CAGTGGCCGGAAATGTAATTTATCAAGATTTATGATATTTAACTAACTCC  1050
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CAGTGGCCGGAAATGTAATTTATCAAGATTTATGATATTTAACT-ACTCC  1045

seq1  TGAAGACTTTCAAAG-AGTATTGCAACG--AAAGCCCACTGAACTTGGTG  1097
      || |||||||||||| ||||||||||||  || |||||||| ||||||||
seq2  TG-AGACTTTCAAAGAAGTATTGCAACGGAAAGGCCCACTG-ACTTGGTG  1093

seq1  CTTCATGT-AGAA-GCTTATGCTAAGATGCAC-AGACTC-CTCACTTGGG  1143
      |||||||| |||| |||||||||||||||||| |||||| ||||||| ||
seq2  CTTCATGTAAGAAGGCTTATGCTAAGATGCACAAGACTCTCTCACTT-GG  1142

seq1  CACACAAGGTACCAGAGGTGGATGG-AAAGCCCACTAT--CTTTGCC  1187
      ||||| ||||| ||||||||||||| || |||||| ||  |||||||
seq2  CACAC-AGGTA-CAGAGGTGGATGGTAAGGCCCACAATTCCTTTGCC  1187


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