BAC Information

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BAC

Clone NameB6Ng01-236I24
Chromosome10 (Build37)6 (Build37)
Map Location 80,648,883 - 80,648,956147,653,133 - 147,654,219
singlet/doubletsingletsinglet
Overlap geneDapk3
Upstream geneEfna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15, Apc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a, Onecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2
Downstream geneItgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic, Brunol5, Ncln, Edg6, Gna15, Gna11, Aes, Tle2, Tle6, BC025920, Sirt6, Ankrd24, LOC100040916, EG666448, EG666458, LOC666711, LOC382388, LOC100040944, EG210583, EG666738, EG666501, 1700123A16Rik, LOC666753, EG666537, BC062127, EG666542, EG666548, EG666790, LOC666571, AL117821, BC062115, 4933439G19Rik, BC024063, AU041133
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-236I24.bB6Ng01-236I24.g
ACCGA047750GA047751
length9071,080
definitionB6Ng01-236I24.b B6Ng01-236I24.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,648,883 - 80,648,956)(147,653,133 - 147,654,219)
sequence
gaattcagtattcatatatggtgcgtatatggatgaatcttgcatgcatg
tcaagttcaaaaacacatgcatagagaaaggctgcaggccttatttataa
tagccagaatctggaaagaacccagatgcccctcaacagaggaatggata
cagaaaatgtggtacatttacacaatggagtactactcagctattaaaaa
gaatgaatttatgaaattcctaggcaaatggttggacctggagggcatca
tcctgagtgaggtaacacaatcacaaaggaacttacacaatatgtactca
ctgataagtggatattagcccagaaacttagaatacccaagatataagat
acaatttgctaaacgcatgaaacgcaagaagaacgaagaccaaagtgtgg
acactttgccccttcttagaattgggaacaaaacacccatggaaggagtt
ataaagtttggagctgtgacgaaaggatggaccatctagagactgccata
tccggggatccatcccataatcagcttccaaacgctgacaccattgcata
cactagcaagattttgctgaaaggaccctgatatagctgtctcttttgag
acaatgccggggcctagcaaacacagaagtggatgctcagagtcaactat
tggatggatcacagggcccccaatggaggagctagagaaagtatccaagg
agctaaagggatctgcaaccctataggtggaacaacattatgaactaacc
agtaccccggagctcttgactctagcttcatatgtatcaaaagatggcct
agtcggccatcactggaaacagaggcccattggacttgcaaactttatat
gccccagtacagaggaccaccagggccaaaaagggggagtgtgtaggtag
gggagtg
gaattcctataggaagaaatgctagtaaatcttgtggtttgcacgtaaaa
atctacacatcaagggaagaatctatgaagatgaaatctgggcagaggtg
gaaagagttaggccaggactctgccccctccttttaaatacagcttcagg
attcattaacattaagttctgagaggcagcactattattaaaggacattt
tgctaacatgaatacagtgtcaggaaatatgctgggataatgtgagcaga
gtcaaagcaatatgaaatttctggaaattctttatgctatgataagtggg
aaaatcttatatctgaatcagtgaaggaaatacgaaggcaaaataatcaa
tagaagcacgctaacgaaacctttctgactctttagggtaaaagccccat
aaatagggagaatctgagcaatgttttctacccagtgagcaaaaaactca
attacagctccctggtggagagttattgattaaaccacaactcagttcca
tttacaattgtaacaatgttaaatatatttttgtggttctgctgatagat
cattagagaaaattaaatcatgaattacttcactaccttcaagcagttac
tagtgtgcaatttgctaacactttgtgcttttcttgttgactttgagagt
ggcttgttaattccagggcgcactcttgcctttccctaaaacacaactaa
taatgtagagaacatctcactgtaaggatttcagatagaccaacaagtcc
tgaagcttgtcattgaagtagccagagcttccaggtggtgaggagattgg
gggatctctgatttacatggaatcacatgactgctctagaacaggttggt
tctacattaaagaggtcaaaggtagatgaagctgaagtgtggtcagggtc
aagctgagttccgagattcgttgcacttgtcagcattggcctcgctgtgc
agcacagggtcccctgtgccatcttattcttgcagcaaagctaggtggat
tacagacgatgtagtcagaattctttacagtgcaactttcaatccgtcac
attctgggtcaatatgagcatgaaggatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_80648883_80648956
seq2: B6Ng01-236I24.b_882_955 (reverse)

seq1  CACTCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTA  50
      |||||||||||| || |||||||||||||||||||||| | ||| |||||
seq2  CACTCCCCTACCTACACACTCCCCCTTTTTGGCCCTGGTGGTCCTCTGTA  50

seq1  CTGGGGCATATAAAGTTTGCAAGT  74
      ||||||||||||||||||||||||
seq2  CTGGGGCATATAAAGTTTGCAAGT  74

seq1: chr6_147653133_147654219
seq2: B6Ng01-236I24.g_66_1145

seq1  GAATTCCTATAGGAAGAAATGCTAGTAAATCTTGTGGTTTGCACGTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATAGGAAGAAATGCTAGTAAATCTTGTGGTTTGCACGTAAAA  50

seq1  ATCTACACATCAAGGGAAGAATCTATGAAGATGAAATCTGGGCAGAGGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACACATCAAGGGAAGAATCTATGAAGATGAAATCTGGGCAGAGGTG  100

seq1  GAAAGAGTTAGGCCAGGACTCTGCCCCCTCCTTTTAAATACAGCTTCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAGTTAGGCCAGGACTCTGCCCCCTCCTTTTAAATACAGCTTCAGG  150

seq1  ATTCATTAACATTAAGTTCTGAGAGGCAGCACTATTATTAAAGGACATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTAACATTAAGTTCTGAGAGGCAGCACTATTATTAAAGGACATTT  200

seq1  TGCTAACATGAATACAGTGTCAGGAAATATGCTGGGATAATGTGAGCAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAACATGAATACAGTGTCAGGAAATATGCTGGGATAATGTGAGCAGA  250

seq1  GTCAAAGCAATATGAAATTTCTGGAAATTCTTTATGCTATGATAAGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAAGCAATATGAAATTTCTGGAAATTCTTTATGCTATGATAAGTGGG  300

seq1  AAAATCTTATATCTGAATCAGTGAAGGAAATACGAAGGCAAAATAATCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCTTATATCTGAATCAGTGAAGGAAATACGAAGGCAAAATAATCAA  350

seq1  TAGAAGCACGCTAACGAAACCTTTCTGACTCTTTAGGGTAAAAGCCCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCACGCTAACGAAACCTTTCTGACTCTTTAGGGTAAAAGCCCCAT  400

seq1  AAATAGGGAGAATCTGAGCAATGTTTTCTACCCAGTGAGCAAAAAACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGGGAGAATCTGAGCAATGTTTTCTACCCAGTGAGCAAAAAACTCA  450

seq1  ATTACAGCTCCCTGGTGGAGAGTTATTGATTAAACCACAACTCAGTTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGCTCCCTGGTGGAGAGTTATTGATTAAACCACAACTCAGTTCCA  500

seq1  TTTACAATTGTAACAATGTTAAATATATTTTTGTGGTTCTGCTGATAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAATTGTAACAATGTTAAATATATTTTTGTGGTTCTGCTGATAGAT  550

seq1  CATTAGAGAAAATTAAATCATGAATTACTTCACTACCTTCAAGCAGTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAGAAAATTAAATCATGAATTACTTCACTACCTTCAAGCAGTTAC  600

seq1  TAGTGTGCAATTTGCTAACACTTTGTGCTTTTCTTGTTGACTTTGAGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTGCAATTTGCTAACACTTTGTGCTTTTCTTGTTGACTTTGAGAGT  650

seq1  GGCTTGTTAATTCCAGGGCGCACTCTTGCCTTTCCCTAAAACACAACTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGTTAATTCCAGGGCGCACTCTTGCCTTTCCCTAAAACACAACTAA  700

seq1  TAATGTAGAGAACATCTCACTGTAAGGATTTCAGATAGACCAACAAGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTAGAGAACATCTCACTGTAAGGATTTCAGATAGACCAACAAGTCC  750

seq1  TGAAGCTTGTCATTGAAGTAGCCAGAGCTTCCAGGTGGTGAGGAGATTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCTTGTCATTGAAGTAGCCAGAGCTTCCAGGTGGTGAGGAGATTGG  800

seq1  GGGATCTCTGATTTACAT-GAATCACATGACTGCTCTAGAACAGGTTGGT  849
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGGATCTCTGATTTACATGGAATCACATGACTGCTCTAGAACAGGTTGGT  850

seq1  CTAACATTTAAGAGGTC-AAGGTAGATGAAGCTGAAGTGTGGTCAGGGTC  898
         ||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  TCTACATTAAAGAGGTCAAAGGTAGATGAAGCTGAAGTGTGGTCAGGGTC  900

seq1  AGGCTGAGGTCCGGAGGATTCGTTGCACCTGTCAGCATTGGCTTCGCTGT  948
      | |||||| ||||   |||||||||||| ||||||||||||| |||||||
seq2  AAGCTGAGTTCCG--AGATTCGTTGCACTTGTCAGCATTGGCCTCGCTGT  948

seq1  GCAGCAGCAGGGTCCCCTGTGGCATCTTATTC-TGCAGCAAAGCTA-GTG  996
      |||||| |||||||||||||| |||||||||| ||||||||||||| |||
seq2  GCAGCA-CAGGGTCCCCTGTGCCATCTTATTCTTGCAGCAAAGCTAGGTG  997

seq1  GATTACAGACGATGTAGTCAGGAATCTTTACCAGTGGACACTTTCAGATC  1046
      ||||||||||||||||||||| | |||||| ||||| | ||||||| |||
seq2  GATTACAGACGATGTAGTCAGAATTCTTTA-CAGTGCA-ACTTTCA-ATC  1044

seq1  CTGGCACACATCTGGGGTCAATATGAGCATGGTAAGGATCT  1087
      | | ||||  ||| |||||||||||||||||  ||||||||
seq2  C-GTCACA-TTCT-GGGTCAATATGAGCATG--AAGGATCT  1080