BAC Information

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BAC

Clone NameB6Ng01-237D11
Chromosome10 (Build37)
Map Location 3,052,445 - 3,200,843
singlet/doubletdoublet
Overlap geneCnksr3
Upstream genenone
Downstream geneOprm1, A130090K04Rik, LOC237252, LOC100041224
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237D11.bB6Ng01-237D11.g
ACCGA048237GA048238
length1,0211,172
definitionB6Ng01-237D11.b B6Ng01-237D11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(3,052,445 - 3,053,226)(3,199,672 - 3,200,843)
sequence
gaattcccttataccctaagtcacgcctccctataattaatatgttattc
tggtgcatttgtcaaaatcatttaaacaatatctagatgttctattaatt
aaattccacactttatttcagtttcatgaacttttgtttattttttttgt
ttttttttttgttgttgttttaaagaaaagcactgtttaatttgaaatct
tgaaaaacatgataacggtactataacacacaaaaaaagcacttgcagtc
ttgggcctaaatgatttggtgaatttgttggtgagtttattcctattatt
tatgtatttattcatttacttatgaactttgcatcagtcctttgtgaatt
tcacatcttacgccccaatctcactcatcctcccgaccctttgtatctgc
cctctgccctcggaaccattcaacaaaataaaataaacaacaaaaccctt
cttgttgtggacacggtcatgtatcacagtttgtcacacagtgtgcccct
ctgtccacctagctttacttgcaaacgttcattgcaatgggtcattggtc
tgttccacggcccccggcttcagttacactatcaacactggatcctcacc
aggactcttctcggatatcctgttgttgccccatgtcatggggatctgca
gccttggatctgcagggctggccctttcacacgctccagcagttcataga
tggggcagatgccagggtgggtcaaaccaaagccctggatctgggcctgg
gtggtagctgagcttgtcagccagccagttctccctcatacctcctctct
ccagcactgcacccaatggtgcagctagaaggggctgggctagctctccc
atcttcatgcccttggggataattcactgtcttctatgctaccagggcca
gctctcctgtgctgcccaggtgaaatgcagggacagcctgctaggggtgg
ctgggaggagcatcttttctcccttgctcacaccacttcatggcagaaaa
ggggcaggcataagcctgctc

gaattcatcagtccaactgtggctgcctgacatgaagaccaacaggctca
agtgagaaccgcaaactgtcaggccagagtgtacgaggactcactcacaa
ctttctaccaagagcaagatggcttcccacacccattcctccccaccccg
aaaggaaacagctgcaggcatgacctcacattatgtggtgtggtaatgac
ggaaaggaagaaaactttcctgaacaagtcgccaccccctcatgaatcac
acactgaaacagagcttcatgtcagccctgggtcacctggatcagcagtc
agggccaccaaggcaactagcagcttgccccaggcaggtctccactgccc
tatcctcagcctgccacctcaggaatggtgcagcctttatagcctgcctg
ctcaaccctctgcctctctttcctgccagtaaataagatggcacagtcag
catcctagaaaccgttgggagctcaacacctgacatgcaattcccagtta
gtgatggtgtctcccttggctccatcccgctgttccccttctccctcaaa
tactgcccctttctatttcctctcagacaggaactcggccctgtcagtgc
ctctttgttcttgtaccattacacttgaagtcatcatgccattatagagg
tgaatccaatgggaaatgtaggtcacaaccccttcctgcctttgtttcct
tcttctcatcttaaaccctcaagactggacctgaagactgacccttgcac
tcagtgcttggtgttgactacagaagcagccttggaagtgcacaggaaca
cacagaaccattgcagggggagaaacgcagcagagggcacccctcttcac
tactgcaggaagggatgcagggcacatgctaagaaaaagcacaaggtgag
gctgacacgcagatggaaagaggagggaaaagcagatgtgtctctcggaa
gcaggggcctgagaggaagctctggtgaaacagcgcctgtcactgagaga
gatgactcccagtccttcatgtcccaaggaaagacaagatcaaatataga
aaggtgcagtttctgagacagtcatcttgtagtggccatccaacggcacg
ggaatgacactgaacgcattcaccaggctgttgcctctgtgcattgcatg
acctgtggtattaatgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_3052445_3053226
seq2: B6Ng01-237D11.b_44_825

seq1  GAATTCCCTTATACCCTAAGTCACGCCTCCCTATAATTAATATGTTATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTATACCCTAAGTCACGCCTCCCTATAATTAATATGTTATTC  50

seq1  TGGTGCATTTGTCAAAATCATTTAAACAATATCTAGATGTTCTATTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCATTTGTCAAAATCATTTAAACAATATCTAGATGTTCTATTAATT  100

seq1  AAATTCCACACTTTATTTCAGTTTCATGAACTTTTGTTTATTTTTTTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCACACTTTATTTCAGTTTCATGAACTTTTGTTTATTTTTTTTGT  150

seq1  TTTTTTTTTTGTTGTTGTTTTAAAGAAAAGCACTGTTTAATTTGAAATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTTGTTGTTGTTTTAAAGAAAAGCACTGTTTAATTTGAAATCT  200

seq1  TGAAAAACATGATAACGGTACTATAACACACAAAAAAAGCACTTGCAGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACATGATAACGGTACTATAACACACAAAAAAAGCACTTGCAGTC  250

seq1  TTGGGCCTAAATGATTTGGTGAATTTGTTGGTGAGTTTATTCCTATTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCCTAAATGATTTGGTGAATTTGTTGGTGAGTTTATTCCTATTATT  300

seq1  TATGTATTTATTCATTTACTTATGAACTTTGCATCAGTCCTTTGTGAATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATTTATTCATTTACTTATGAACTTTGCATCAGTCCTTTGTGAATT  350

seq1  TCACATCTTACGCCCCAATCTCACTCATCCTCCCGACCCTTTGTATCTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATCTTACGCCCCAATCTCACTCATCCTCCCGACCCTTTGTATCTGC  400

seq1  CCTCTGCCCTCGGAACCATTCAACAAAATAAAATAAACAACAAAACCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCCCTCGGAACCATTCAACAAAATAAAATAAACAACAAAACCCTT  450

seq1  CTTGTTGTGGACACGGTCATGTATCACAGTTTGTCACACAGTGTGCCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTGTGGACACGGTCATGTATCACAGTTTGTCACACAGTGTGCCCCT  500

seq1  CTGTCCACCTAGCTTTACTTGCAAACGTTCATTGCAATGGGTCATTGGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCACCTAGCTTTACTTGCAAACGTTCATTGCAATGGGTCATTGGTC  550

seq1  TGTTCCACGGCCCCCGGCTTCAGTTACACTATCAACACTGGATCCTCACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCACGGCCCCCGGCTTCAGTTACACTATCAACACTGGATCCTCACC  600

seq1  AGGACTCTTCTCGGATATCCTGTTGTTGCCCCATGTCATGGGGATCTGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTTCTCGGATATCCTGTTGTTGCCCCATGTCATGGGGATCTGCA  650

seq1  GCCTTGGATCTGCAGGGCTGGCCCTTTCACACGCTCCAGCAGTTCATAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGGATCTGCAGGGCTGGCCCTTTCACACGCTCCAGCAGTTCATAGA  700

seq1  TGGGGCAGATGCCAGGGTGGGTCAAACCAAAGCCCTGGATCTGGGCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCAGATGCCAGGGTGGGTCAAACCAAAGCCCTGGATCTGGGCCTGG  750

seq1  GTGGTAGCTGAGCTTGTCAGCCAGCCAGTTCT  782
      ||||||||||||||||||||||||||||||||
seq2  GTGGTAGCTGAGCTTGTCAGCCAGCCAGTTCT  782


seq1: chr10_3199672_3200843
seq2: B6Ng01-237D11.g_71_1242 (reverse)

seq1  ----CACA-------CACACG-CATGC-ATGCACCAGAGCAACCAGCTTG  37
          ||||       |||| | ||||| ||||| |||||  | |||| ||
seq2  CACACACATTAATACCACAGGTCATGCAATGCA-CAGAGGCAACAGCCTG  49

seq1  GTGAATGCGTTCAGTGTCATTTCCCGTGCCGTGTGATGGCCACTACAAGA  87
      ||||||||||||||||||| ||||||||||||  ||||||||||||||||
seq2  GTGAATGCGTTCAGTGTCA-TTCCCGTGCCGTTGGATGGCCACTACAAGA  98

seq1  TGAACTGTCTCAGAAACTGCACCCTTTCTTATATTTGATCTTTGTCCTTT  137
      || |||||||||||||||||| |||||| ||||||||||| |||| ||||
seq2  TG-ACTGTCTCAGAAACTGCA-CCTTTC-TATATTTGATC-TTGT-CTTT  143

seq1  CCTGGGGACATGAAGGACTGGGAGTCATCTTCCTCTTCAGTGACAGGCGC  187
      ||| ||||||||||||||||||||||||||  ||| ||||||||||||| 
seq2  CCTTGGGACATGAAGGACTGGGAGTCATCT--CTC-TCAGTGACAGGCG-  189

seq1  CTGTTTCACCAGAGCCTTCCTCTCAGGCCCCTGCTTCCGAGAGACACATC  237
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CTGTTTCACCAGAG-CTTCCTCTCAGGCCCCTGCTTCCGAGAGACACATC  238

seq1  TGCTTTTCCCCTCCTCTTTCCATCTGCGTGTCAGCCTCACCTTTGTGCTT  287
      ||||||| ||||||||||||||||||||||||||||||||| ||||||||
seq2  TGCTTTT-CCCTCCTCTTTCCATCTGCGTGTCAGCCTCACC-TTGTGCTT  286

seq1  TTTCTTAGCATGTGCCCTGCATCCCTTCCTGCAGTAGTGAAGAGGGGTGC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTAGCATGTGCCCTGCATCCCTTCCTGCAGTAGTGAAGAGGGGTGC  336

seq1  CCTCTGCTGCGTTTCTCCCCCTGCAATGGTTCTGTGTGTTCCTGTGCACT  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGCTGCGTTTCTCCCCCTGCAATGGTTCTGTGTGTTCCTGTGCACT  386

seq1  TCCAAGGCTGCTTCTGTAGTCAACACCAAGCACTGAGTGCAAGGGTCAGT  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGCTGCTTCTGTAGTCAACACCAAGCACTGAGTGCAAGGGTCAGT  436

seq1  CTTCAGGTCCAGTCTTGAGGGTTTAAGATGAGAAGAAGGAAACAAAGGCA  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGTCCAGTCTTGAGGGTTTAAGATGAGAAGAAGGAAACAAAGGCA  486

seq1  GGAAGGGGTTGTGACCTACATTTCCCATTGGATTCACCTCTATAATGGCA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGGTTGTGACCTACATTTCCCATTGGATTCACCTCTATAATGGCA  536

seq1  TGATGACTTCAAGTGTAATGGTACAAGAACAAAGAGGCACTGACAGGGCC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGACTTCAAGTGTAATGGTACAAGAACAAAGAGGCACTGACAGGGCC  586

seq1  GAGTTCCTGTCTGAGAGGAAATAGAAAGGGGCAGTATTTGAGGGAGAAGG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCTGTCTGAGAGGAAATAGAAAGGGGCAGTATTTGAGGGAGAAGG  636

seq1  GGAACAGCGGGATGGAGCCAAGGGAGACACCATCACTAACTGGGAATTGC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGCGGGATGGAGCCAAGGGAGACACCATCACTAACTGGGAATTGC  686

seq1  ATGTCAGGTGTTGAGCTCCCAACGGTTTCTAGGATGCTGACTGTGCCATC  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAGGTGTTGAGCTCCCAACGGTTTCTAGGATGCTGACTGTGCCATC  736

seq1  TTATTTACTGGCAGGAAAGAGAGGCAGAGGGTTGAGCAGGCAGGCTATAA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACTGGCAGGAAAGAGAGGCAGAGGGTTGAGCAGGCAGGCTATAA  786

seq1  AGGCTGCACCATTCCTGAGGTGGCAGGCTGAGGATAGGGCAGTGGAGACC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGCACCATTCCTGAGGTGGCAGGCTGAGGATAGGGCAGTGGAGACC  836

seq1  TGCCTGGGGCAAGCTGCTAGTTGCCTTGGTGGCCCTGACTGCTGATCCAG  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGGGGCAAGCTGCTAGTTGCCTTGGTGGCCCTGACTGCTGATCCAG  886

seq1  GTGACCCAGGGCTGACATGAAGCTCTGTTTCAGTGTGTGATTCATGAGGG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCCAGGGCTGACATGAAGCTCTGTTTCAGTGTGTGATTCATGAGGG  936

seq1  GGTGGCGACTTGTTCAGGAAAGTTTTCTTCCTTTCCGTCATTACCACACC  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCGACTTGTTCAGGAAAGTTTTCTTCCTTTCCGTCATTACCACACC  986

seq1  ACATAATGTGAGGTCATGCCTGCAGCTGTTTCCTTTCGGGGTGGGGAGGA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATGTGAGGTCATGCCTGCAGCTGTTTCCTTTCGGGGTGGGGAGGA  1036

seq1  ATGGGTGTGGGAAGCCATCTTGCTCTTGGTAGAAAGTTGTGAGTGAGTCC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTGTGGGAAGCCATCTTGCTCTTGGTAGAAAGTTGTGAGTGAGTCC  1086

seq1  TCGTACACTCTGGCCTGACAGTTTGCGGTTCTCACTTGAGCCTGTTGGTC  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTACACTCTGGCCTGACAGTTTGCGGTTCTCACTTGAGCCTGTTGGTC  1136

seq1  TTCATGTCAGGCAGCC-CAGTTGGACTGATGAATTC  1172
      |||||||||||||||| |||||||||||||||||||
seq2  TTCATGTCAGGCAGCCACAGTTGGACTGATGAATTC  1172


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