BAC Information

Click to search

BAC

Clone NameB6Ng01-237I22
Chromosome10 (Build37)
Map Location 87,870,202 - 87,982,368
singlet/doubletdoublet
Overlap geneGnptab, Sycp3, Chpt1, 8030451F13Rik
Upstream geneAscl1, Pah, LOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik
Downstream geneLOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20, Slc5a8, Tmem16d, Gas2l3, Nr1h4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-237I22.bB6Ng01-237I22.g
ACCGA048480GA048481
length7531,096
definitionB6Ng01-237I22.b B6Ng01-237I22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,981,618 - 87,982,368)(87,870,202 - 87,871,315)
sequence
gaattctttgcatcaaggaatggacctgtatatacgtggcatcatttcta
ccaatatgtggtgtggttggttggttgtttttttttttttgttttggttt
tttggttttttttattaaggagaatgagtttctcaaatttgcatcaaaga
agttttaagaatgttcaaacagcatgctgctttgtctggtcatgaatttt
ttttaagcaagtgaagcattcattaaagggcagtgcagagttctggcttc
atgggttctctcttgaatgacactctgaggttgttgttttttttttaaat
atatatctatataacaggaattcagaaggtaggtatgaaatactagttgg
catttctctcactctcagaaggtattagttgtattttttgcacagtttat
agatggccaaagtttttaatatttattattatacataagtacactatagc
tgtcttcagactcaccagaagagggcgtcagatcccattataggtagttg
tgagccaccatgtggtttctgggatttgaactcaggacctctggaagagc
agtcagtgctctttacccgctgagccatctcaccagcccctagatggcca
aagttaaagtgaatatttttttttccttcccagtgggcttgaatcacaat
tatctgtgcttaattaaaaagacgttaagaaatggctctcctgttgacta
atagccgttcagtcagaacctttccatcattacatggagggttcccccaa
acc
gaattctcttccaagagaacggtgctgaagagggcgtggctggaggaggg
aggtgtggttaaagaagtattgacagcagtatgagcagcatcttgcgagt
tcctagccatactcagtgagagtgagcacccaggatgtcctgagaacaac
ctctagccctaacgctaaccctgattgtgaagcctcggctgctggggtca
cactcgactacggcacacatgtgtcttcattttcctgacaaagcatcggg
acccattacctctctggtctccatttctagtcaggtttacccgattgctt
ggtcttccctagtttcttggataagcgacataggcgtgtgtctcagggca
catgaaaatacctttttcctggtatgtttcttcctccagcttccacactg
gctcattcccaggttttacactgtgttctacaatgccgtggtctcagctc
tgtgctgaagttgcctagatctcgtgcatactgagaaaacactctaccag
tgggctccattcctatcccggactatttcccagtaaagcaatctctaata
tctctatctaaaaatagtccttacgtagactttctatattttccctgtga
cgttttacctctcagacttcatatctgtttagtttttactcagctagact
ataaatgcctcatctcttctggagggtagggtgagagcagggcctcagca
taacccaggctgacccgagatcatcttttcttgggcctcttgagagtttt
gtaattataggtaggtgctgccaagctctcgctcacatctttcaagcaaa
aggtggttgtcggttgtcacttggacaattctcccatgaagtaattaatc
catgatggaagtatttatatatatatacatattgcccaatcctgtgtccg
gctgcaagaaagggcaaatggagcgtggatttcctccttgctatgaccag
atatctgacaaagagagacttgaagatgacaggtttattctgctgtgatc
atagtggggaggcgtgtagctcaaagctttgcagcaggcaagttggttag
atatgaagcaagccggaaatcatgctcagctagttcccattgcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_87981618_87982368
seq2: B6Ng01-237I22.b_44_796 (reverse)

seq1  GGTTT-GGGGAACCCTCCATGT-ATGATGGAAAGGTTCTGACTGAACGGC  48
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  GGTTTGGGGGAACCCTCCATGTAATGATGGAAAGGTTCTGACTGAACGGC  50

seq1  TATTAGTCAACAGGAGAGCCATTTCTTAACGTTCTTTTTAATTAAGCACA  98
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TATTAGTCAACAGGAGAGCCATTTCTTAACG-TCTTTTTAATTAAGCACA  99

seq1  GATAATTGTGATTCAAGCCCACTGGGAAGGAAAAAAAAATATTCACTTTA  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATTGTGATTCAAGCCCACTGGGAAGGAAAAAAAAATATTCACTTTA  149

seq1  ACTTTGGCCATCTAGGGGCTGGTGAGATGGCTCAGCGGGT-AAGAGCACT  197
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACTTTGGCCATCTAGGGGCTGGTGAGATGGCTCAGCGGGTAAAGAGCACT  199

seq1  GACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGAAACCACATGGTGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTCTTCCAGAGGTCCTGAGTTCAAATCCCAGAAACCACATGGTGG  249

seq1  CTCACAACTACCTATAATGGGATCTGACGCCCTCTTCTGGTGAGTCTGAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACTACCTATAATGGGATCTGACGCCCTCTTCTGGTGAGTCTGAA  299

seq1  GACAGCTATAGTGTACTTATGTATAATAATAAATATTAAAAACTTTGGCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCTATAGTGTACTTATGTATAATAATAAATATTAAAAACTTTGGCC  349

seq1  ATCTATAAACTGTGCAAAAAATACAACTAATACCTTCTGAGAGTGAGAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATAAACTGTGCAAAAAATACAACTAATACCTTCTGAGAGTGAGAGA  399

seq1  AATGCCAACTAGTATTTCATACCTACCTTCTGAATTCCTGTTATATAGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAACTAGTATTTCATACCTACCTTCTGAATTCCTGTTATATAGAT  449

seq1  ATATATTTAAAAAAAAAACAACAACCTCAGAGTGTCATTCAAGAGAGAAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTTAAAAAAAAAACAACAACCTCAGAGTGTCATTCAAGAGAGAAC  499

seq1  CCATGAAGCCAGAACTCTGCACTGCCCTTTAATGAATGCTTCACTTGCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAGCCAGAACTCTGCACTGCCCTTTAATGAATGCTTCACTTGCTT  549

seq1  AAAAAAAATTCATGACCAGACAAAGCAGCATGCTGTTTGAACATTCTTAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATTCATGACCAGACAAAGCAGCATGCTGTTTGAACATTCTTAA  599

seq1  AACTTCTTTGATGCAAATTTGAGAAACTCATTCTCCTTAATAAAAAAAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTTGATGCAAATTTGAGAAACTCATTCTCCTTAATAAAAAAAAC  649

seq1  CAAAAAACCAAAACAAAAAAAAAAAAACAACCAACCAACCACACCACATA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACCAAAACAAAAAAAAAAAAACAACCAACCAACCACACCACATA  699

seq1  TTGGTAGAAATGATGCCACGTATATACAGGTCCATTCCTTGATGCAAAGA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGAAATGATGCCACGTATATACAGGTCCATTCCTTGATGCAAAGA  749

seq1  ATTC  751
      ||||
seq2  ATTC  753

seq1: chr10_87870202_87871315
seq2: B6Ng01-237I22.g_67_1162

seq1  GAATTCTCTTCCAAGAGAACGGTGCTGAAGAGGGCGTGGCTGGAGGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCCAAGAGAACGGTGCTGAAGAGGGCGTGGCTGGAGGAGGG  50

seq1  AGGTGTGGTTAAAGAAGTATTGACAGCAGTATGAGCAGCATCTTGCGAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGGTTAAAGAAGTATTGACAGCAGTATGAGCAGCATCTTGCGAGT  100

seq1  TCCTAGCCATACTCAGTGAGAGTGAGCACCCAGGATGTCCTGAGAACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCCATACTCAGTGAGAGTGAGCACCCAGGATGTCCTGAGAACAAC  150

seq1  CTCTAGCCCTAACGCTAACCCTGATTGTGAAGCCTCGGCTGCTGGGGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGCCCTAACGCTAACCCTGATTGTGAAGCCTCGGCTGCTGGGGTCA  200

seq1  CACTCGACTACGGCACACATGTGTCTTCATTTTCCTGACAAAGCATCGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCGACTACGGCACACATGTGTCTTCATTTTCCTGACAAAGCATCGGG  250

seq1  ACCCATTACCTCTCTGGTCTCCATTTCTAGTCAGGTTTACCCGATTGCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTACCTCTCTGGTCTCCATTTCTAGTCAGGTTTACCCGATTGCTT  300

seq1  GGTCTTCCCTAGTTTCTTGGATAAGCGACATAGGCGTGTGTCTCAGGGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTTCCCTAGTTTCTTGGATAAGCGACATAGGCGTGTGTCTCAGGGCA  350

seq1  CATGAAAATACCTTTTTCCTGGTATGTTTCTTCCTCCAGCTTCCACACTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAAATACCTTTTTCCTGGTATGTTTCTTCCTCCAGCTTCCACACTG  400

seq1  GCTCATTCCCAGGTTTTACACTGTGTTCTACAATGCCGTGGTCTCAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATTCCCAGGTTTTACACTGTGTTCTACAATGCCGTGGTCTCAGCTC  450

seq1  TGTGCTGAAGTTGCCTAGATCTCGTGCATACTGAGAAAACACTCTACCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGAAGTTGCCTAGATCTCGTGCATACTGAGAAAACACTCTACCAG  500

seq1  TGGGCTCCATTCCTATCCCGGACTATTTCCCAGTAAAGCAATCTCTAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCCATTCCTATCCCGGACTATTTCCCAGTAAAGCAATCTCTAATA  550

seq1  TCTCTATCTAAAAATAGTCCTTACGTAGACTTTCTATATTTTCCCTGTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATCTAAAAATAGTCCTTACGTAGACTTTCTATATTTTCCCTGTGA  600

seq1  CGTTTTACCTCTCAGACTTCATATCTGTTTAGTTTTTACTCAGCTAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTTACCTCTCAGACTTCATATCTGTTTAGTTTTTACTCAGCTAGACT  650

seq1  ATAAATGCCTCATCTCTTCTGGAGGGTAGGGTGAGAGCAGGGCCTCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGCCTCATCTCTTCTGGAGGGTAGGGTGAGAGCAGGGCCTCAGCA  700

seq1  TAACCCAGGCTGACCCGAGATCATCTTTTCTTGGGCCTCTTGAGAGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCCAGGCTGACCCGAGATCATCTTTTCTTGGGCCTCTTGAGAGTTTT  750

seq1  GTAATTATAGGTAGGTGCTGCCAAGCTCTCGCTCACATCTTTCAAGCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTATAGGTAGGTGCTGCCAAGCTCTCGCTCACATCTTTCAAGCAAA  800

seq1  AGGTGGTTGTCGGTTGTCACTTGGACAATTCTCCCATGAAGTAATTAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGTTGTCGGTTGTCACTTGGACAATTCTCCCATGAAGTAATTAATC  850

seq1  CATGATGGAAGTATTTATATATATATACATATTGCCCAATCCTGTGTCCG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CATGATGGAAGTATTTATATATATATACATATTGCCCAATCCTGTGTCC-  899

seq1  GGCTGCAAGAAAGGGCAAATGGAGCGTGGATTTCCTCCTTGCTATGACCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGCAAGAAAGGGCAAATGGAGCGTGGATTTCCTCCTTGCTATGACCA  949

seq1  GATATCTGACAAAGAGAGACTTGAAGGAAGGACAGGTTTATTCTGGCTGG  1000
      ||||||||||||||||||||||||||  | |||||||||||||| ||| |
seq2  GATATCTGACAAAGAGAGACTTGAAG--ATGACAGGTTTATTCT-GCT-G  995

seq1  TGATTCATAGTGGGGAAGGCGTGGTAGCTCAAAGCTTTGCAGGCAGGGCA  1050
      ||| ||||||||||| |||||| |||||||||||||||||| ||| ||||
seq2  TGA-TCATAGTGGGG-AGGCGT-GTAGCTCAAAGCTTTGCA-GCA-GGCA  1040

seq1  GGTTGG-TAGATATGGAAGCCAAGGCGGGAAATCCAGTGCTCAGCTAGTT  1099
       ||||| ||||||| |||||  | || |||||||   |||||||||||||
seq2  AGTTGGTTAGATAT-GAAGC--AAGCCGGAAATC--ATGCTCAGCTAGTT  1085

seq1  TTCCCCCTTTGCCCC  1114
          ||| |||||||
seq2  ----CCCATTGCCCC  1096