BAC Information

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BAC

Clone NameB6Ng01-238D02
Chromosome10 (Build37)
Map Location 56,261,961 - 56,263,091
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041927, D630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347
Downstream geneLOC100042622, LOC668355, LOC100042628, EG629739, LOC629742, LOC668363, Hsf2, Serinc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238D02.bB6Ng01-238D02.g
ACCGA048952GA048953
length5361,120
definitionB6Ng01-238D02.b B6Ng01-238D02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ctttaagtaaatcccacaaaaacccatatgacctagatcatactgtcccc
ctatttaccaagaaaatgaaacaaagttctgtgacacaagcaaattggaa
ggaaaaccccccaaacaatcatttgtttttaaatgacattctaaatgggg
aggcaaagttgcctcaggcataaaaggtaaaatcagattcatttccatcc
tatcaaaataatattttaattatctcttttatttttgaaattgtaatatg
atgactttattatattattcctgcttctcttttctctctccaaactctac
catatatctctccatggtctctttaaaatttatggcttttttttcactaa
ttggttttatatgagttatatatatatatgtgtgtgtgtgtatatatata
tatacctataaatacatatgtgtgtgaaaaaagagagatatattttagtg
agagcatggagcgataatgttttgagggcaagaaattaaattttgcttcc
atttttttaaaaaatggactataaaaaatctaaagt
gaattccagccctggggaagctgaggcaacagaatgaagagtttgagcct
ggaggaggctacacagtgtgactgtttttttttgttttttgtttttaaat
tctgatggcacaatatcttctcttttagcaggctgcccacccgtcatctg
tagcaaattttatctccagacattcactgcctcacacacccatcttttgt
ctgaatggtatctgtctcctcttctgcctgggtggcatgtccatgtggag
agcctaagtgctggctccttggcctgacaacgcaagtcagtgctcgcttc
tggtgctgaggtgcaaacctctttgtacttgttttaactttttagttttt
ttcctcctaatttcaatactcagcatttttgcctgaattccatcttatat
ttttctctctgcacatgaatatcattatgatactttctgatactgagaat
gttagctctccctccagaccctttgaattttacttttcccatctctagtg
tggatgatatattttgacaagtgttcggtactgaaatcttactttgctgg
cttagaccatgcatgcaaacttgcaactcttcatgacttgaatttcttta
ttactgagttatcatttctcccaggtatttgcaaatgaacagtatcagga
tctgagctaggatggggaagtgctgtggaagctaggaaggggatcccagc
atcagactaaatttactgtaggacctcactgagtttaacccctgatatag
gatactgtaggatttatacaaggaagataatattttacaggaatacagtt
gtctttctattttggcatatttatagagataaaaagggaacagttaaata
aactaaaaacacatggtaattaaaatttcttttacacttattatgtattt
tatgtgtacatgtcatatggtatggcggtcagaagacaactttcataaat
tgtttctctctttccacagacagccttaggattgagccaagctaagtatc
aagagctagcagtggcaaatgcatttacttgctgagcattctcacagtct
cacacaataactccaatgcatgagttatttctagtggtccagtgaaacta
ctaattgactctcaaggttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_56261961_56263091
seq2: B6Ng01-238D02.g_65_1184

seq1  GAATTCCAGCCCTGGGGAAGCTGAGGCAACAGAATGAAGAGTTTGAGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGCCCTGGGGAAGCTGAGGCAACAGAATGAAGAGTTTGAGCCT  50

seq1  GGAGGAGGCTACACAGTGTGACTGTTTTTTTTTGTTTTTTGTTTTTAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGGCTACACAGTGTGACTGTTTTTTTTTGTTTTTTGTTTTTAAAT  100

seq1  TCTGATGGCACAATATCTTCTCTTTTAGCAGGCTGCCCACCCGTCATCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATGGCACAATATCTTCTCTTTTAGCAGGCTGCCCACCCGTCATCTG  150

seq1  TAGCAAATTTTATCTCCAGACATTCACTGCCTCACACACCCATCTTTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAATTTTATCTCCAGACATTCACTGCCTCACACACCCATCTTTTGT  200

seq1  CTGAATGGTATCTGTCTCCTCTTCTGCCTGGGTGGCATGTCCATGTGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATGGTATCTGTCTCCTCTTCTGCCTGGGTGGCATGTCCATGTGGAG  250

seq1  AGCCTAAGTGCTGGCTCCTTGGCCTGACAACGCAAGTCAGTGCTCGCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAAGTGCTGGCTCCTTGGCCTGACAACGCAAGTCAGTGCTCGCTTC  300

seq1  TGGTGCTGAGGTGCAAACCTCTTTGTACTTGTTTTAACTTTTTAGTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCTGAGGTGCAAACCTCTTTGTACTTGTTTTAACTTTTTAGTTTTT  350

seq1  TTCCTCCTAATTTCAATACTCAGCATTTTTGCCTGAATTCCATCTTATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCCTAATTTCAATACTCAGCATTTTTGCCTGAATTCCATCTTATAT  400

seq1  TTTTCTCTCTGCACATGAATATCATTATGATACTTTCTGATACTGAGAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTCTGCACATGAATATCATTATGATACTTTCTGATACTGAGAAT  450

seq1  GTTAGCTCTCCCTCCAGACCCTTTGAATTTTACTTTTCCCATCTCTAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTCTCCCTCCAGACCCTTTGAATTTTACTTTTCCCATCTCTAGTG  500

seq1  TGGATGATATATTTTGACAAGTGTTCGGTACTGAAATCTTACTTTGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGATATATTTTGACAAGTGTTCGGTACTGAAATCTTACTTTGCTGG  550

seq1  CTTAGACCATGCATGCAAACTTGCAACTCTTCATGACTTGAATTTCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACCATGCATGCAAACTTGCAACTCTTCATGACTTGAATTTCTTTA  600

seq1  TTACTGAGTTATCATTTCTCCCAGGTATTTGCAAATGAACAGTATCAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTGAGTTATCATTTCTCCCAGGTATTTGCAAATGAACAGTATCAGGA  650

seq1  TCTGAGCTAGGATGGGGAAGTGCTGTGGAAGCTAGGAAGGGGATCCCAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCTAGGATGGGGAAGTGCTGTGGAAGCTAGGAAGGGGATCCCAGC  700

seq1  ATCAGACTAAATTTACTGTAGGACCTCACTGAGTTTAACCCCTGATATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGACTAAATTTACTGTAGGACCTCACTGAGTTTAACCCCTGATATAG  750

seq1  GATACTGTAGGATTTATACAAGGAAGATAATATTTTACAGGAATACAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTGTAGGATTTATACAAGGAAGATAATATTTTACAGGAATACAGTT  800

seq1  GTCTTTCTATTTTGGCATATTTATAGAGATAAAAAGGGAACAGTTAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTCTATTTTGGCATATTTATAGAGATAAAAAGGGAACAGTTAAATA  850

seq1  AACTAAAAACACATGGTAATTAAAATTTCTTTTACACTTATTATGTATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AACTAAAAACACATGGTAATTAAAATTTCTTTTACACTTATTATGTA-TT  899

seq1  TTATGTGTACATGTCATATGGTATGGCGGTCAGAAGACAACTTTCATAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTACATGTCATATGGTATGGCGGTCAGAAGACAACTTTCATAAA  949

seq1  TTGTTTCTCTCTTTCCACCAGACAGGCCTTAGGGATTGAGCCAAGCTAAG  1000
      ||||||||||||||||| |||||| |||||| ||||||||||||||||||
seq2  TTGTTTCTCTCTTTCCA-CAGACA-GCCTTA-GGATTGAGCCAAGCTAAG  996

seq1  TATCAAGAGGCTTAGCAGTGGCAAATGCATTTACTTGCTGAGCCATCTCC  1050
      |||||||||   |||||||||||||||||||||||||||||||  ||| |
seq2  TATCAAGAG--CTAGCAGTGGCAAATGCATTTACTTGCTGAGCATTCT-C  1043

seq1  ACAGTCTTCACACAATAACTCCAATGCATGAAGTTA-TTCTAGTGTCACA  1099
      |||||| ||||||||||||||||||||||| ||||| ||||||||   ||
seq2  ACAGTC-TCACACAATAACTCCAATGCATG-AGTTATTTCTAGTGGTCCA  1091

seq1  GTGAAAACTACCAACATGAACTCTCAGGGTTG  1131
      ||| ||||||| |  ||  ||||||| |||||
seq2  GTG-AAACTACTA--ATTGACTCTCAAGGTTG  1120