BAC Information

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BAC

Clone NameB6Ng01-238K21
Chromosome10 (Build37)
Map Location 31,030,552 - 31,031,707
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC212815, Trmt11, Hint3, Ncoa7, LOC382354, Hey2, LOC654431, EG432448
Downstream geneHddc2, Tpd52l1, LOC100041294, Ibrdc1, LOC666055, LOC667752, LOC100040638, Tcba1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-238K21.bB6Ng01-238K21.g
ACCGA049311GA049312
length1,1521,073
definitionB6Ng01-238K21.b B6Ng01-238K21.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcactcattaagacagaactactgtgctttaatcctctcagaaatg
ccttcatggatacacttagaggtgtgctttatgaaaccattgcatgtttc
tcaatctagtcaaattaagaatggagattaaacttttagttagggttttt
gtttttgttttttgagacagaggttttctgtgtagttccgactgtccaat
aactcactcagaaaaggctgtcatagtaccaactggacctaaactcagat
agttgtttgcctctggccctgagtgctaggattaaaggcatgtaccacca
tgtgcctaaaaaataggttttaagagagcaaagataaaggatcagacttt
cactgataaatccctagtactagtctttggaataaattgtagaatcaagt
gaatacattgaatattgacttgagtagttattaaatttctgtggtatgca
aacatcaactaaatggtcaacatttaaagggacaagtcagtagtttttca
gaggtttctcctgcccaagattcccctgacgtggaaagctggagcttagg
tccaggtcagagttctctccatgctatgctgcttgtctcctctagggtca
gtaactcacctaaaaactgcctacaactctgccggcctctcaaaaagcct
cactacacacccgaggcaacacacacttcttacatccccgagaaccactg
tgttcctttgcaagagatctttaagtaacaccagtgtttcaagacatctg
tcactcatgaggtctctaggtgtttcctctgctcctattctaagaagaat
gttctttcactgctaaatcttgatgtgagtgatgggtgctgtcagaccac
agtctaagaatggagttgagcaaggggaatcttgagtgcttgtgagaaaa
ctccaagaaacaaggcaagagtcttatgaccacagcttcttgaaacccca
gaatcgttcttggattgtgttttttgtactcctcccaagtataatggata
ggagtgagttatttcagctgattattctcatggtgcatctatgaaaaaaa
acatttttcttgtccatatgggcttgtctttgtcatcaatactttacctc
attgatcttctaccctcagagtacaaattgcctgatgctctgactaagag
cc
gaattctccactaaacccatcgggtcctggattttttttttttttttttt
tttttggttgggagactatgaatgactgcttctatttctttagggactaa
gggactgtttagatggattatctgatatgttttaaatttggcacctagtg
tctgcctagaaaattgtccatttcatccagattttcgaattttattgagt
ataagcttttgtagtaggatctgatgattttttgaatttcctcagtttct
gttgttgtggctcccttttcatttctgattttattaaattggacactgtc
tctgtgccctctggttagtctggctaagggtttatctatcttgttgattt
tctcgaagaaccagcttctggtttggttgattctttgtatagttcttttt
gtttctaattagttgatttcattcctgagtttaattatttcctgctgtct
actcctcttggatatatttacttctttttgttctagagctttcaggtgtg
ctgtcaagctgctagtgtaagctctatccagtttcttttagaaactggca
gttagagctatgagttttcctcttagcactgcttttattctgtcccataa
gttttggtatgatgtgtcttcattttcattaaattctaaaaagtctttaa
tttctttgtttatttcttccttgaccaagttatcattaagtagagtgttg
ttcagcttccatgtgtttgagtgctttcttttgtttttgttggtattgaa
gaccatccttagtccatggtgatctgataggatgcatggaattacttcag
gttttgtttttttttttttttttttaatctgttgaggcctgtttttgtga
ctaattatatggtccattttggaaaaggatacaataagatgttgagaaga
aagtataattcttttgcctttagatgaatatgtctacacatatcttttag
atcctattgggttcataacttgtgtaagtttcactgtgtatctgtttggt
ttcctgttccatggatctgttcatgccgaaagagggtgcataaggtttcc
attatattggttgggatgagatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_31030552_31031707
seq2: B6Ng01-238K21.b_43_1194

seq1  GAATTCACTCATTAAGACAGAACTACTGTGCTTTAATCCTCTCAGAAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCATTAAGACAGAACTACTGTGCTTTAATCCTCTCAGAAATG  50

seq1  CCTTCATGGATACACTTAGAGGTGTGCTTTATGAAACCATTGCATGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCATGGATACACTTAGAGGTGTGCTTTATGAAACCATTGCATGTTTC  100

seq1  TCAATCTAGTCAAATTAAGAATGGAGATTAAACTTTTAGTTAGGGTTTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTAGTCAAATTAAGAATGGAGATTAAACTTTTAGTTAGGGTTTTT  150

seq1  GTTTTTGTTTTTTGAGACAGAGGTTTTCTGTGTAGTTCCGACTGTCCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTTTTTTGAGACAGAGGTTTTCTGTGTAGTTCCGACTGTCCAAT  200

seq1  AACTCACTCAGAAAAGGCTGTCATAGTACCAACTGGACCTAAACTCAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCACTCAGAAAAGGCTGTCATAGTACCAACTGGACCTAAACTCAGAT  250

seq1  AGTTGTTTGCCTCTGGCCCTGAGTGCTAGGATTAAAGGCATGTACCACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTTTGCCTCTGGCCCTGAGTGCTAGGATTAAAGGCATGTACCACCA  300

seq1  TGTGCCTAAAAAATAGGTTTTAAGAGAGCAAAGATAAAGGATCAGACTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCTAAAAAATAGGTTTTAAGAGAGCAAAGATAAAGGATCAGACTTT  350

seq1  CACTGATAAATCCCTAGTACTAGTCTTTGGAATAAATTGTAGAATCAAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGATAAATCCCTAGTACTAGTCTTTGGAATAAATTGTAGAATCAAGT  400

seq1  GAATACATTGAATATTGACTTGAGTAGTTATTAAATTTCTGTGGTATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACATTGAATATTGACTTGAGTAGTTATTAAATTTCTGTGGTATGCA  450

seq1  AACATCAACTAAATGGTCAACATTTAAAGGGACAAGTCAGTAGTTTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCAACTAAATGGTCAACATTTAAAGGGACAAGTCAGTAGTTTTTCA  500

seq1  GAGGTTTCTCCTGCCCAAGATTCCCCTGACGTGGAAAGCTGGAGCTTAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTCTCCTGCCCAAGATTCCCCTGACGTGGAAAGCTGGAGCTTAGG  550

seq1  TCCAGGTCAGAGTTCTCTCCATGCTATGCTGCTTGTCTCCTCTAGGGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGTCAGAGTTCTCTCCATGCTATGCTGCTTGTCTCCTCTAGGGTCA  600

seq1  GTAACTCACCTAAAAACTGCCTACAACTCTGCCGGCCTCTCAAAAAGCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTCACCTAAAAACTGCCTACAACTCTGCCGGCCTCTCAAAAAGCCT  650

seq1  CACTACACACCCGAGGCAACACACACTTCTTACATCCCCGAGAACCACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACACACCCGAGGCAACACACACTTCTTACATCCCCGAGAACCACTG  700

seq1  TGTTCCTTTGCAAGAGATCTTTAAGTAACACCAGTGTTTCAAGACATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCTTTGCAAGAGATCTTTAAGTAACACCAGTGTTTCAAGACATCTG  750

seq1  TCACTCATGAGGTCTCTAGGTGTTTCCTCTGCTCCTATTCTAAGAAGAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCATGAGGTCTCTAGGTGTTTCCTCTGCTCCTATTCTAAGAAGAAT  800

seq1  GTTCTTTCACTGCTAAATCTTGATGTGAGTGATGGGTGCTGTCAGACCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTCACTGCTAAATCTTGATGTGAGTGATGGGTGCTGTCAGACCAC  850

seq1  AGTCTAAGAATGGAGTTGAGCAAGGGGAATCTTGAGTGCTTGTGAGAAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAAGAATGGAGTTGAGCAAGGGGAATCTTGAGTGCTTGTGAGAAAA  900

seq1  CTCCAAGAAAACAAGGCAAGAGTCTTATGACCACAGCTTCTTGAAACCCC  950
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAG-AAACAAGGCAAGAGTCTTATGACCACAGCTTCTTGAAACCCC  949

seq1  AGAATCGTTCTTGGATTGTGTTTTTTGTACTCCTCCCAAGTATAATGGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCGTTCTTGGATTGTGTTTTTTGTACTCCTCCCAAGTATAATGGAT  999

seq1  AGGAGTGAGTTATTTCAGCTGA-TATTCTTCAT-GTGCATCTATGAAAAA  1048
      |||||||||||||||||||||| ||||| |||| ||||||||||||||||
seq2  AGGAGTGAGTTATTTCAGCTGATTATTC-TCATGGTGCATCTATGAAAAA  1048

seq1  AAACA-TTTTCTTGTCACATAT-GGCTTGTCTTTGTCATCAAATACTTTA  1096
      ||||| |||||||||| ||||| ||||||||||||||||| |||||||||
seq2  AAACATTTTTCTTGTC-CATATGGGCTTGTCTTTGTCATC-AATACTTTA  1096

seq1  -CTCATTTGAATCTTCTTAACCCTCAGAGTACAAATTGCTGGATGCTCTG  1145
       ||||||   |||||||  ||||||||||||||||||||  |||||||||
seq2  CCTCATT--GATCTTCT--ACCCTCAGAGTACAAATTGCCTGATGCTCTG  1142

seq1  ACTAAAGAGCC  1156
      ||| |||||||
seq2  ACT-AAGAGCC  1152