BAC Information

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BAC

Clone NameB6Ng01-240M21
Chromosome10 (Build37)
Map Location 126,417,240 - 126,418,323
singlet/doubletsinglet
Overlap genenone
Upstream geneLrig3, LOC100043547, LOC668336, Xrcc6bp1, LOC622567
Downstream geneCtdsp2, Avil, Tsfm, Mettl1, Cyp27b1, March9, Cdk4, Tspan31, Centg1, Os9, LOC100043028, B4galnt1, LOC100043035, C78409, D10Ertd610e, Dtx3, Pip5k2c, Kif5a, Dctn2, Mbd6, LOC100043045, Ddit3, Mars, LOC622075, Arhgap9, Gli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-240M21.bB6Ng01-240M21.g
ACCGA050878GA050879
length1131,071
definitionB6Ng01-240M21.b B6Ng01-240M21.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
caagaacctgccaggcatgttcaggttcaatggaagtggggaagggggag
tgtttaacctataatctggccatagactatgtgactgtgctcagaggttt
tgggggggggggg
gaattcagattcctccagggagaaatgtgaaggacaaactacacacaaaa
aagaaaacaaaactgtaactccaagaaaactcaaccagcaacctgacacg
gtcaggagccagctgctctgctctccgctgcctgtcactcatcctgccgg
attaaacttcagctctgatttgctcagtgcagctacagcacagtcccgag
tcttcttatcccgatgtggcccgccaccctcaagacacctaggagaccct
gcagggcgcacaggtgggaaggaggcacacgccatgccggcttcttgtca
ctaccccctcctcttatgtcctttcccatcctgaagcgtgggtcctattc
ctgggatgaggctgcaacgggaactgaaccctggcagtaactgataaaca
caggcagcctccctttgcggcgctcagcactgctgagaggccagcaggag
aggaggtgaacttgctgcgccgccgatctcacagctgggtcagtgatgca
gttagaacaggggaccctggcaaagaggaggggcaggcagggcttcggct
ctcctcagtgcagtctgcttcagaaggccaagaaacacgcaccgctcccc
ttcccccaacctaacaaggaattccagagagcctgggacaccagcccagc
tgctctgcccctaggctaaggcaagttgggtagactccttgggaagtgaa
ccccaggaaaaagtgacctgctgcttagtattagtaggggatgactacac
ccaggccccacagctggcctccttccaggctctaggtctcagtctactca
attgtggcacgggccttttatgcccctccggaatagaaagaaagggctgc
agcgcctgagatctggttccaagagcgtgctcgcctctcagcctctgagc
caagtggccacagtcctgggagttctctagaaaaagaaaaggaggagggg
ggcaacactagtctttactctggcgaaatttctacagctatcttgaacac
aatgctcagcagatgacataggggagaggagagttcaagggacctcactg
tgatcaacgagcaatccattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_126417240_126418323
seq2: B6Ng01-240M21.g_68_1138 (reverse)

seq1  AAATGGGATTGCTCGGTTTGATCACAGTGGGGTCCCCTGAAACTCTCCTC  50
      |||| ||||||||||  |||||||||||| |||||| || ||||||||||
seq2  AAAT-GGATTGCTCG--TTGATCACAGTGAGGTCCCTTG-AACTCTCCTC  46

seq1  TCCCCTATGTTCATCTGGCCTTGAGCATTGTGTTCAAGATAGCTGGTAGA  100
      ||||||||| |||||||    ||||||||||||||||||||||| |||||
seq2  TCCCCTATG-TCATCTG---CTGAGCATTGTGTTCAAGATAGCT-GTAGA  91

seq1  AATTTCCGCCCAGAGTAAGGACTAGTGTTGCCCCCCTCCCTCCTTTTTCT  150
      ||||||   ||||||||| |||||||||||||||||| ||||| ||||||
seq2  AATTTC--GCCAGAGTAAAGACTAGTGTTGCCCCCCT-CCTCC-TTTTCT  137

seq1  TTTTCTAGAGAACTCCCAGGACTGTGGCCACTTGGCTCAGAGGCTGAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGAGAACTCCCAGGACTGTGGCCACTTGGCTCAGAGGCTGAGAG  187

seq1  GCGAGCACGCTCTTGGAACCAGATCTCAGGCGCTGCAGCCCTTTCTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGCACGCTCTTGGAACCAGATCTCAGGCGCTGCAGCCCTTTCTTTCT  237

seq1  ATTCCGGAGGGGCATAAAAGGCCCGTGCCACAATTGAGTAGACTGAGACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCGGAGGGGCATAAAAGGCCCGTGCCACAATTGAGTAGACTGAGACC  287

seq1  TAGAGCCTGGAAGGAGGCCAGCTGTGGGGCCTGGGTGTAGTCATCCCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCCTGGAAGGAGGCCAGCTGTGGGGCCTGGGTGTAGTCATCCCCTA  337

seq1  CTAATACTAAGCAGCAGGTCACTTTTTCCTGGGGTTCACTTCCCAAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACTAAGCAGCAGGTCACTTTTTCCTGGGGTTCACTTCCCAAGGAG  387

seq1  TCTACCCAACTTGCCTTAGCCTAGGGGCAGAGCAGCTGGGCTGGTGTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCCAACTTGCCTTAGCCTAGGGGCAGAGCAGCTGGGCTGGTGTCCC  437

seq1  AGGCTCTCTGGAATTCCTTGTTAGGTTGGGGGAAGGGGAGCGGTGCGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTCTCTGGAATTCCTTGTTAGGTTGGGGGAAGGGGAGCGGTGCGTGT  487

seq1  TTCTTGGCCTTCTGAAGCAGACTGCACTGAGGAGAGCCGAAGCCCTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGCCTTCTGAAGCAGACTGCACTGAGGAGAGCCGAAGCCCTGCCT  537

seq1  GCCCCTCCTCTTTGCCAGGGTCCCCTGTTCTAACTGCATCACTGACCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCCTCTTTGCCAGGGTCCCCTGTTCTAACTGCATCACTGACCCAG  587

seq1  CTGTGAGATCGGCGGCGCAGCAAGTTCACCTCCTCTCCTGCTGGCCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGATCGGCGGCGCAGCAAGTTCACCTCCTCTCCTGCTGGCCTCTC  637

seq1  AGCAGTGCTGAGCGCCGCAAAGGGAGGCTGCCTGTGTTTATCAGTTACTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGCTGAGCGCCGCAAAGGGAGGCTGCCTGTGTTTATCAGTTACTG  687

seq1  CCAGGGTTCAGTTCCCGTTGCAGCCTCATCCCAGGAATAGGACCCACGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTTCAGTTCCCGTTGCAGCCTCATCCCAGGAATAGGACCCACGCT  737

seq1  TCAGGATGGGAAAGGACATAAGAGGAGGGGGTAGTGACAAGAAGCCGGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGATGGGAAAGGACATAAGAGGAGGGGGTAGTGACAAGAAGCCGGCA  787

seq1  TGGCGTGTGCCTCCTTCCCACCTGTGCGCCCTGCAGGGTCTCCTAGGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTGTGCCTCCTTCCCACCTGTGCGCCCTGCAGGGTCTCCTAGGTGT  837

seq1  CTTGAGGGTGGCGGGCCACATCGGGATAAGAAGACTCGGGACTGTGCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGGTGGCGGGCCACATCGGGATAAGAAGACTCGGGACTGTGCTGT  887

seq1  AGCTGCACTGAGCAAATCAGAGCTGAAGTTTAATCCGGCAGGATGAGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCACTGAGCAAATCAGAGCTGAAGTTTAATCCGGCAGGATGAGTGA  937

seq1  CAGGCAGCGGAGAGCAGAGCAGCTGGCTCCTGACCGTGTCAGGTTGCTGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGCGGAGAGCAGAGCAGCTGGCTCCTGACCGTGTCAGGTTGCTGG  987

seq1  TTGAGTTTTCTTGGAGTTACAGTTTTGTTTTCTTTTTTGTGTGTAGTTTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTTCTTGGAGTTACAGTTTTGTTTTCTTTTTTGTGTGTAGTTTG  1037

seq1  TCCTTCACATTTCTCCCTGGAGGAATCTGAATTC  1084
      ||||||||||||||||||||||||||||||||||
seq2  TCCTTCACATTTCTCCCTGGAGGAATCTGAATTC  1071