BAC Information

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BAC

Clone NameB6Ng01-242K18
Chromosome10 (Build37)
Map Location 129,457,438 - 129,577,972
singlet/doubletdoublet
Overlap geneOlfr821, Olfr822, Olfr1542-ps1, Olfr823, LOC382471, Olfr824, LOC672405
Upstream geneEG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790, Olfr791, Olfr792, GA_x5J8B7W6HFP-3168293-3169194, Olfr794, GA_x5J8B7W6HFP-3198834-3199739, Olfr796, GA_x5J8B7W6HFP-3231749-3230798, Olfr798, Olfr799, Olfr800, Smt3h2-ps3, Olfr801, Olfr802, Olfr803, Olfr804, Olfr805, Olfr806, Olfr807, Olfr808, Olfr809, Olfr810, Olfr811, Olfr812, Olfr813, Olfr814, Olfr815, Olfr816, Olfr1544-ps1, Olfr817-ps1, Olfr818, LOC100043200, Olfr247, LOC100043203, Olfr820
Downstream geneOlfr825, Olfr826, Olfr827, Neurod4, 5830405N20Rik, EG625068, LOC100043719, EG623734, EG625109, EG625131
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-242K18.bB6Ng01-242K18.g
ACCGA052255GA052256
length1,112885
definitionB6Ng01-242K18.b B6Ng01-242K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,576,868 - 129,577,972)(129,457,438 - 129,458,319)
sequence
gaattccacacccctaagctccttaccccataaaaacccctagctttcga
gcctcatggccgacatccgttatctcccgtgtgggatgcacgtcggtctg
gagctccgtaattaaacgacctcatgtaattatatcaaggcgttctgttc
tgttcgtgattcttgggtgaaagccgaattgggaatggagtgggggtttc
cctgataggtctatcactgtaacggctgggcagttggaagccttcctgga
atgaccaagttaaaggtaaacttccctgactctgggtttcacctggaaga
gcctttgtttctggcctccccttcatcggtaaggagctggaggcagatgc
catgtgcaatttcttcacgtctcttcttgccactgtttctagcttggtct
ctggcttggaatgatcatgttctcctttggactggaaaaagaagtgtcgt
agtgcctccagaagttggtgactgggaagctgctggccgaccatggatgg
cctcagccgggaatgagtttcaagggcccactgcagttggggaagctttt
cctctgctgctctgcctagctttgtcacagattgtgagtctcagataaat
cttgcagccttccttcgtggaacagtcctctgctgcacaccactaccctc
aggcatgagttcttgagaattcgggagttgtttttggtgttgcacatggc
ccagctgctcaggtggcactgtgcgttcaggtcgtccgagcggtaaatgt
gtttcactgtagtctggtcactccaggaaccagtcaatctttttcacatt
ctgaggcagtttcatgtcgttaatatcccagctcagtatctcttttgtct
ttaggatcaaagttgtccagttccacgataaggttggcttacacagcctc
ttctccactcaaattgtcagagatgtctaagagagctccaagtctcagaa
ctctggtccacaaaaagcagctgaaagggctttattgtttcaagcctttc
caacatccagtggctcctgaagtccttctttcttccaacttctggtcagg
tgtcataccagtgtcagctctgggatcaggtctgcaagttctgattacct
cctaggagtgtg
gaattccatacattggatatagtatgttttgattaaatcaacctcttgtt
tattcccctcaaattttttcttatatatcctcaacaaattttcacttttt
ctgtccaatttcatgtactctcttttaaactgaccaagtccattttgtgt
ggccagtacatgtattagtgcaagtccatcctctgatgcatggacttcca
gtcaggagtcacagcactgaggaaaacgacccttaaattcacatttagag
tatcacaattcagagtattatagtctgttcattttgtatctatgtatgga
gatattacactgaaatacctctacaaatataattaacaacaataataagt
aaaatgaaatatattgagctcagacttttatcttgaggaaatctactagt
taataacattttcagagatgagttagctcaatattttatcaaacagaaat
ctaggagtaagtagtattctaaagtctatacatgttatatttcagtttac
aaattaagatgaaatatcaaatacatgtttaatattaagtattttgacat
tgattttttagaaaacgcagcagtgaatatgtaaggcataatactatcca
caagatcaataaactatattacatcaagacagttttgatttaaggttaat
attactgtaagattttgaattttcctcaatttctcttaatgttgataata
ccttgtaagatatttggcaaggattttaagaaatataaactctttttgat
gtaagtatgaaacttcattgtatttcttattaaacaacatttactgaata
ttatgagcaatggacacattctattcttgattctaactttaatttcatat
ttccagcaagccaactaaaaccatctgcttatatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_129576868_129577972
seq2: B6Ng01-242K18.b_47_1158 (reverse)

seq1  CACACCTCCTA-GAAGTGAACAGAACTTGGCAGGACCTGAT-CCAGAGCT  48
      |||| |||||| || || | |||||||| ||| |||||||| ||||||||
seq2  CACA-CTCCTAGGAGGTAATCAGAACTT-GCA-GACCTGATCCCAGAGCT  47

seq1  GACACTTGTATGACACCTGGACAAGAAGTTGG-AGAAAGAAGGAC-TCAG  96
      |||||| ||||||||||| ||| ||||||||| |||||||||||| ||||
seq2  GACACTGGTATGACACCT-GACCAGAAGTTGGAAGAAAGAAGGACTTCAG  96

seq1  GAG-CACT-GAAGGTGGAAAGGCTTTGAAAAAT-AAGCCC-TTCAGCTGC  142
      ||| |||| || | |||||||||||  || ||| |||||| |||||||||
seq2  GAGCCACTGGATGTTGGAAAGGCTTGAAACAATAAAGCCCTTTCAGCTGC  146

seq1  -TTTTGTGGA-CAGAGTTCTGAGACTTGGAGCTCTC-TAGACATCTCTGA  189
       ||||||||| ||||||||||||||||||||||||| |||||||||||||
seq2  TTTTTGTGGACCAGAGTTCTGAGACTTGGAGCTCTCTTAGACATCTCTGA  196

seq1  CAATTTGAGTGGAGAAGAGCCTGTGTTAAGCCAACCTTATCGTGGAACTG  239
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  CAATTTGAGTGGAGAAGAGGCTGTG-TAAGCCAACCTTATCGTGGAACTG  245

seq1  GACAACTTTGATCCTAAAGAC-AAAGAGATACTGAGCTGGGATATTAACG  288
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GACAACTTTGATCCTAAAGACAAAAGAGATACTGAGCTGGGATATTAACG  295

seq1  ACATGAAACTGCCTCAGAATGTGAAAAAGATTGACTGGTTCCTGGAGTGA  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAAACTGCCTCAGAATGTGAAAAAGATTGACTGGTTCCTGGAGTGA  345

seq1  CCAGACTACAGTGAAACACATTTACCGCTCGGACGACCTGAACGCACAGT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACTACAGTGAAACACATTTACCGCTCGGACGACCTGAACGCACAGT  395

seq1  GCCACCTGAGCAGCTGGGCCATGTGCAACACCAAAAACAACTCCCGAATT  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTGAGCAGCTGGGCCATGTGCAACACCAAAAACAACTCCCGAATT  445

seq1  CTCAAGAACTCATGCCTGAGGGTAGTGGTGTGCAGCAGAGGACTGTTCCA  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAACTCATGCCTGAGGGTAGTGGTGTGCAGCAGAGGACTGTTCCA  495

seq1  CGAAGGAAGGCTGCAAGATTTATCTGAGACTCACAATCTGTGACAAAGCT  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGGAAGGCTGCAAGATTTATCTGAGACTCACAATCTGTGACAAAGCT  545

seq1  AGGCAGAGCAGCAGAGGAAAAGCTTCCCCAACTGCAGTGGGCCCTTGAAA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGCAGCAGAGGAAAAGCTTCCCCAACTGCAGTGGGCCCTTGAAA  595

seq1  CTCATTCCCGGCTGAGGCCATCCATGGTCGGCCAGCAGCTTCCCAGTCAC  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCCCGGCTGAGGCCATCCATGGTCGGCCAGCAGCTTCCCAGTCAC  645

seq1  CAACTTCTGGAGGCACTACGACACTTCTTTTTCCAGTCCAAAGGAGAACA  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTCTGGAGGCACTACGACACTTCTTTTTCCAGTCCAAAGGAGAACA  695

seq1  TGATCATTCCAAGCCAGAGACCAAGCTAGAAACAGTGGCAAGAAGAGACG  738
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCATTCCAAGCCAGAGACCAAGCTAGAAACAGTGGCAAGAAGAGACG  745

seq1  TGAAGAAATTGCACATGGCATCTGCCTCCAGCTCCTTACCGATGAAGGGG  788
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAAATTGCACATGGCATCTGCCTCCAGCTCCTTACCGATGAAGGGG  795

seq1  AGGCCAGAAACAAAGGCTCTTCCAGGTGAAACCCAGAGTCAGGGAAGTTT  838
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGAAACAAAGGCTCTTCCAGGTGAAACCCAGAGTCAGGGAAGTTT  845

seq1  ACCTTTAACTTGGTCATTCCAGGAAGGCTTCCAACTGCCCAGCCGTTACA  888
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTAACTTGGTCATTCCAGGAAGGCTTCCAACTGCCCAGCCGTTACA  895

seq1  GTGATAGACCTATCAGGGAAACCCCCACTCCATTCCCAATTCGGCTTTCA  938
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATAGACCTATCAGGGAAACCCCCACTCCATTCCCAATTCGGCTTTCA  945

seq1  CCCAAGAATCACGAACAGAACAGAACGCCTTGATATAATTACATGAGGTC  988
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGAATCACGAACAGAACAGAACGCCTTGATATAATTACATGAGGTC  995

seq1  GTTTAATTACGGAGCTCCAGACCGACGTGCATCCCACACGGGAGATAACG  1038
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATTACGGAGCTCCAGACCGACGTGCATCCCACACGGGAGATAACG  1045

seq1  GATGTCGGCCATGAGGCTCGAAAGCTAGGGGTTTTTATGGGGTAAGGAGC  1088
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTCGGCCATGAGGCTCGAAAGCTAGGGGTTTTTATGGGGTAAGGAGC  1095

seq1  TTAGGGGTGTGGAATTC  1105
      |||||||||||||||||
seq2  TTAGGGGTGTGGAATTC  1112

seq1: chr10_129457438_129458319
seq2: B6Ng01-242K18.g_66_949

seq1  GAATTCCATACATTGGATATAGTATGTTTTGATTAAATCAACCTCTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATACATTGGATATAGTATGTTTTGATTAAATCAACCTCTTGTT  50

seq1  TATTCCCCTCAAATTTTTTCTTATATATCCTCAACAAATTTTCACTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCCTCAAATTTTTTCTTATATATCCTCAACAAATTTTCACTTTTT  100

seq1  CTGTCCAATTTCATGTACTCTCTTTTAAACTGACCAAGTCCATTTTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCAATTTCATGTACTCTCTTTTAAACTGACCAAGTCCATTTTGTGT  150

seq1  GGCCAGTACATGTATTAGTGCAAGTCCATCCTCTGATGCATGGACTTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGTACATGTATTAGTGCAAGTCCATCCTCTGATGCATGGACTTCCA  200

seq1  GTCAGGAGTCACAGCACTGAGGAAAACGACCCTTAAATTCACATTTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGAGTCACAGCACTGAGGAAAACGACCCTTAAATTCACATTTAGAG  250

seq1  TATCACAATTCAGAGTATTATAGTCTGTTCATTTTGTATCTATGTATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACAATTCAGAGTATTATAGTCTGTTCATTTTGTATCTATGTATGGA  300

seq1  GATATTACACTGAAATACCTCTACAAATATAATTAACAACAATAATAAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTACACTGAAATACCTCTACAAATATAATTAACAACAATAATAAGT  350

seq1  AAAATGAAATATATTGAGCTCAGACTTTTATCTTGAGGAAATCTACTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAATATATTGAGCTCAGACTTTTATCTTGAGGAAATCTACTAGT  400

seq1  TAATAACATTTTCAGAGATGAGTTAGCTCAATATTTTATCAAACAGAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACATTTTCAGAGATGAGTTAGCTCAATATTTTATCAAACAGAAAT  450

seq1  CTAGGAGTAAGTAGTATTCTAAAGTCTATACATGTTATATTTCAGTTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGTAAGTAGTATTCTAAAGTCTATACATGTTATATTTCAGTTTAC  500

seq1  AAATTAAGATGAAATATCAAATACATGTTTAATATTAAGTATTTTGACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAGATGAAATATCAAATACATGTTTAATATTAAGTATTTTGACAT  550

seq1  TGATTTTTTAGAAAACGCAGCAGTGAATATGTAAGGCATAATACTATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTTTAGAAAACGCAGCAGTGAATATGTAAGGCATAATACTATCCA  600

seq1  CAAGATCAATAAACTATATTACATCAAGACAGTTTTGATTTAAGGTTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCAATAAACTATATTACATCAAGACAGTTTTGATTTAAGGTTAAT  650

seq1  ATTACTGTAAGATTTTGAATTTTCCTCAATTTCTCTTAATGTTGATAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACTGTAAGATTTTGAATTTTCCTCAATTTCTCTTAATGTTGATAATA  700

seq1  CCTTGTAAGATATTTGGCAAGGATTTTAAGAAATATAAACTCTTTTTGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTAAGATATTTGGCAAGGATTTTAAGAAATATAAACTCTTTTTGAT  750

seq1  GTAAGTATGAAACTTCATTGTATTTCTTATTAAACAACATTTACTGAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTATGAAACTTCATTGTATTTCTTATTAAACAACATTTACTGAATA  800

seq1  TTATGAGCAATGGACACATTCTATTCTTGATTCTAACTTT-ATTTCATAT  849
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTATGAGCAATGGACACATTCTATTCTTGATTCTAACTTTAATTTCATAT  850

seq1  TTCCAGCAAGCCAACTAAAACCATCTGC-TATAT  882
      |||||||||||||||||||||||||||| |||||
seq2  TTCCAGCAAGCCAACTAAAACCATCTGCTTATAT  884