BAC Information

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BAC

Clone NameB6Ng01-243A01
Chromosome10 (Build37)
Map Location 71,369,147 - 71,493,192
singlet/doubletdoublet
Overlap gene1700049L16Rik
Upstream geneBicc1, LOC622551, C730027H18Rik, Tfam, Ube2d1, LOC665472, Zcd1, Ipmk, LOC100039860, LOC216081, EG216082, LOC622812, EG327767
Downstream geneLOC100040505, Zwint
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-243A01.bB6Ng01-243A01.g
ACCGA052503GA052504
length1,1891,095
definitionB6Ng01-243A01.b B6Ng01-243A01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,492,015 - 71,493,192)(71,369,147 - 71,370,252)
sequence
gaattcattctcccttggaatagtttggtgttttgcctaatttctatttt
gaaatagcaatgcattttggaaaataaaacaataatggggaaactcttgt
gagcatggctagctaggctacctgggaactcagaattaaattcaattctt
ctgctttgtctctagaaaattcaactatcagaactttaaagaatgtgctg
atgatgtacaaataaaaatcaatccattgcggacaggggaaaataaatta
actgtctgcactgggaaagcctggtccctaagcaatagccttacttctat
aaagggccatatgctttgggtaagggcagctataaaccaaaggacaaggt
cttagtctcatgtattttgctggtgttgtgtagctttatactgtttagtt
aatgtcacgttcatccatctagtgatgggttttactcgggactgaaatac
atgaaaatgcacttcgattgtcgatactgtgtggcacaggcatgttctgc
gggaggacaatccagttatactgaggtttatgtttcctgcttgtttttca
cactggtttcaatgaattgcacaatacgttggaaacttccagttccatgg
gaatcctgacaaacacactcttacacaagcacatgcaaggtgacagttga
cctgcaagcttttagggaagaggagtattcaagagattcagttttcacac
tgttattcaaacaacaggaaaatataacaaaaagtgaggcaaacgagtgt
ttaagctaaaaatgagcttatttaaaagtctgttatacgtaaagggaaaa
aaatgtaaatgtagactatgctgcttttacaaggggaatctccctgtaac
ctatgatgtagatgttaaaaaatctggagatgagtgtttataaatactgc
aatctgtcagagtaagctgctttatgataacacttaaggcacttatgtat
acacagagacaaaagtatgcaccacagtatcttccaatttccttggctcc
ccaagggagtgaccaatccctgcacatctacaccatttcccatccaaatc
agagccgttttcagagagttaatgaactaccattgtttctaccaaaccat
atcaagcccctcctgtccttccccagaattccccctcatgtcaggtcatt
cccccccaatctcttgaaaggatcccctctgggttcaac
gaattcctgcctccatattattatgattcaaaacagggatctcttgagat
agatcacaccatgccgtaacattgacaataggttttttttttttttaaaa
aaaggatgtgaatataactcagaatgacagagaaagaactgtgaatcata
aaatatctaaagtaggtgctctaacaaaagagaagcgcatcttccttaag
aaaggaaatgctgtctagttagctcaacttagggctagaaagactgtcta
tcccaaaatagaccttacttgcaatctaaaagttttggattttttgttta
gcatagataatttcaataaaaatggcatataggtgaaaatacatatttct
gagacatactcatggcagtaatgttggtagtggacagatggcaataatta
atagcagttagccaaaaccatttggaggctagataaatatgtggtgttca
gaacaggataaatgataataccaaatcttctctcaaaatctgatcagtga
gaaagtagaattttgttgatttagctttgatggagctagtcatgattagc
aactaaattttatcatgcctcaaactacatgtaaatccttgccccaagga
catgcttgctgcctgcctggctgtttgcttcttcctatgccccagctaat
acttagctcctccttaagaccccattcttaggtcaccttttaaattaaat
cacctttcttttctatggctaagtagatatggtgatgacgtaataccaac
actgctgtggtagcatttttttggcttcttctctatgctgggctttcttc
tgaaacctggatactaattgcctaaaacaatcttgatagcaatgcaatga
tttattatgatgatttatttctactgtctaaaacaacccgggcttagaat
gttattgctattggaaacaggcacaaaattagaagagatggtacccatct
ataaatatagttatgtctggcttcagagggccaatcttctaacttctgga
atgattataaatgaaattattggatgatgactgttgtcctttgctgtgct
agctcccttcaggcaggttgcattagtaattaattatcctgtgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_71492015_71493192
seq2: B6Ng01-243A01.b_45_1233 (reverse)

seq1  GTTGAAACCCAGAGGGGGTTTCCCCTTCTAAGGGAGATGGGGGGGATGAC  50
      |||| |||||||||||| |    ||||  ||| ||   |||||| |||||
seq2  GTTG-AACCCAGAGGGGAT----CCTTTCAAGAGATTGGGGGGGAATGAC  45

seq1  TTG-CATGAGGGG---ATCTGGG--AGGACAGGAAGGGC-TGATATTGGG  93
       || |||||||||    ||||||  ||||||||| |||| |||||| |  
seq2  CTGACATGAGGGGGAATTCTGGGGAAGGACAGGAGGGGCTTGATATGGTT  95

seq1  TTGTAGAA--CATGGTAG-TCATTTACTCTCTGAAAAC-GCTCTGATTT-  138
      | ||||||   ||||||| ||||| ||||||||||||| |||||||||| 
seq2  TGGTAGAAACAATGGTAGTTCATTAACTCTCTGAAAACGGCTCTGATTTG  145

seq1  GATGGGAA--TGTGTAGATGTGCAGGGATTGGTCACTCCCTTTGGGGAGC  186
      ||||||||   ||||||||||||||||||||||||||||| |||||||||
seq2  GATGGGAAATGGTGTAGATGTGCAGGGATTGGTCACTCCC-TTGGGGAGC  194

seq1  CAAGG-AATTGGAAGATACTGT-GTGCATACTTTTTGTCTCTGTGTAATA  234
      ||||| |||||||||||||||| |||||||| |||||||||||||| |||
seq2  CAAGGAAATTGGAAGATACTGTGGTGCATAC-TTTTGTCTCTGTGT-ATA  242

seq1  CATAAGTGCC-TAAGTGTTATCATAAAGCAGCTTTACTCTGACAG-TTGC  282
      |||||||||| ||||||||||||||||||||| |||||||||||| ||||
seq2  CATAAGTGCCTTAAGTGTTATCATAAAGCAGC-TTACTCTGACAGATTGC  291

seq1  AGTATTTATAAACACTCATCTCCAGA-TTTTTAACATCTACATCATAGGT  331
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTATTTATAAACACTCATCTCCAGATTTTTTAACATCTACATCATAGGT  341

seq1  TACA-GGAGATTCCCCTTGTAAAAGCAGCATAGTCTACATTTACATTTTT  380
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGAGATTCCCCTTGTAAAAGCAGCATAGTCTACATTTACATTTTT  391

seq1  TTCCCTTTACGTATAACAGACTTTTAAATAAGCTCATTTTTAGCTTAAAC  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTTTACGTATAACAGACTTTTAAATAAGCTCATTTTTAGCTTAAAC  441

seq1  ACTCGTTTGCCTCACTTTTTGTTATATTTTCCTGTTGTTTGAATAACAGT  480
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGTTTGCCTCACTTTTTGTTATATTTTCCTGTTGTTTGAATAACAGT  491

seq1  GTGAAAACTGAATCTCTTGAATACTCCTCTTCCCTAAAAGCTTGCAGGTC  530
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAACTGAATCTCTTGAATACTCCTCTTCCCTAAAAGCTTGCAGGTC  541

seq1  AACTGTCACCTTGCATGTGCTTGTGTAAGAGTGTGTTTGTCAGGATTCCC  580
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCACCTTGCATGTGCTTGTGTAAGAGTGTGTTTGTCAGGATTCCC  591

seq1  ATGGAACTGGAAGTTTCCAACGTATTGTGCAATTCATTGAAACCAGTGTG  630
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACTGGAAGTTTCCAACGTATTGTGCAATTCATTGAAACCAGTGTG  641

seq1  AAAAACAAGCAGGAAACATAAACCTCAGTATAACTGGATTGTCCTCCCGC  680
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAAGCAGGAAACATAAACCTCAGTATAACTGGATTGTCCTCCCGC  691

seq1  AGAACATGCCTGTGCCACACAGTATCGACAATCGAAGTGCATTTTCATGT  730
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATGCCTGTGCCACACAGTATCGACAATCGAAGTGCATTTTCATGT  741

seq1  ATTTCAGTCCCGAGTAAAACCCATCACTAGATGGATGAACGTGACATTAA  780
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAGTCCCGAGTAAAACCCATCACTAGATGGATGAACGTGACATTAA  791

seq1  CTAAACAGTATAAAGCTACACAACACCAGCAAAATACATGAGACTAAGAC  830
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAACAGTATAAAGCTACACAACACCAGCAAAATACATGAGACTAAGAC  841

seq1  CTTGTCCTTTGGTTTATAGCTGCCCTTACCCAAAGCATATGGCCCTTTAT  880
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCTTTGGTTTATAGCTGCCCTTACCCAAAGCATATGGCCCTTTAT  891

seq1  AGAAGTAAGGCTATTGCTTAGGGACCAGGCTTTCCCAGTGCAGACAGTTA  930
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTAAGGCTATTGCTTAGGGACCAGGCTTTCCCAGTGCAGACAGTTA  941

seq1  ATTTATTTTCCCCTGTCCGCAATGGATTGATTTTTATTTGTACATCATCA  980
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTCCCCTGTCCGCAATGGATTGATTTTTATTTGTACATCATCA  991

seq1  GCACATTCTTTAAAGTTCTGATAGTTGAATTTTCTAGAGACAAAGCAGAA  1030
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTCTTTAAAGTTCTGATAGTTGAATTTTCTAGAGACAAAGCAGAA  1041

seq1  GAATTGAATTTAATTCTGAGTTCCCAGGTAGCCTAGCTAGCCATGCTCAC  1080
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGAATTTAATTCTGAGTTCCCAGGTAGCCTAGCTAGCCATGCTCAC  1091

seq1  AAGAGTTTCCCCATTATTGTTTTATTTTCCAAAATGCATTGCTATTTCAA  1130
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTTCCCCATTATTGTTTTATTTTCCAAAATGCATTGCTATTTCAA  1141

seq1  AATAGAAATTAGGCAAAACACCAAACTATTCCAAGGGAGAATGAATTC  1178
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAATTAGGCAAAACACCAAACTATTCCAAGGGAGAATGAATTC  1189

seq1: chr10_71369147_71370252
seq2: B6Ng01-243A01.g_66_1160

seq1  GAATTCCTGCCTCCATATTATTATGATTCAAAACAGGGATCTCTTGAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCTCCATATTATTATGATTCAAAACAGGGATCTCTTGAGAT  50

seq1  AGATCACACCATGCCGTAACATTGACAATAGGTTTTTTTTTTTTTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACACCATGCCGTAACATTGACAATAGGTTTTTTTTTTTTTTAAAA  100

seq1  AAAGGATGTGAATATAACTCAGAATGACAGAGAAAGAACTGTGAATCATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGATGTGAATATAACTCAGAATGACAGAGAAAGAACTGTGAATCATA  150

seq1  AAATATCTAAAGTAGGTGCTCTAACAAAAGAGAAGCGCATCTTCCTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATCTAAAGTAGGTGCTCTAACAAAAGAGAAGCGCATCTTCCTTAAG  200

seq1  AAAGGAAATGCTGTCTAGTTAGCTCAACTTAGGGCTAGAAAGACTGTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAATGCTGTCTAGTTAGCTCAACTTAGGGCTAGAAAGACTGTCTA  250

seq1  TCCCAAAATAGACCTTACTTGCAATCTAAAAGTTTTGGATTTTTTGTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAATAGACCTTACTTGCAATCTAAAAGTTTTGGATTTTTTGTTTA  300

seq1  GCATAGATAATTTCAATAAAAATGGCATATAGGTGAAAATACATATTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGATAATTTCAATAAAAATGGCATATAGGTGAAAATACATATTTCT  350

seq1  GAGACATACTCATGGCAGTAATGTTGGTAGTGGACAGATGGCAATAATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACATACTCATGGCAGTAATGTTGGTAGTGGACAGATGGCAATAATTA  400

seq1  ATAGCAGTTAGCCAAAACCATTTGGAGGCTAGATAAATATGTGGTGTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGTTAGCCAAAACCATTTGGAGGCTAGATAAATATGTGGTGTTCA  450

seq1  GAACAGGATAAATGATAATACCAAATCTTCTCTCAAAATCTGATCAGTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGGATAAATGATAATACCAAATCTTCTCTCAAAATCTGATCAGTGA  500

seq1  GAAAGTAGAATTTTGTTGATTTAGCTTTGATGGAGCTAGTCATGATTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTAGAATTTTGTTGATTTAGCTTTGATGGAGCTAGTCATGATTAGC  550

seq1  AACTAAATTTTATCATGCCTCAAACTACATGTAAATCCTTGCCCCAAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATTTTATCATGCCTCAAACTACATGTAAATCCTTGCCCCAAGGA  600

seq1  CATGCTTGCTGCCTGCCTGGCTGTTTGCTTCTTCCTATGCCCCAGCTAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTTGCTGCCTGCCTGGCTGTTTGCTTCTTCCTATGCCCCAGCTAAT  650

seq1  ACTTAGCTCCTCCTTAAGACCCCATTCTTAGGTCACCTTTTAAATTAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCTCCTCCTTAAGACCCCATTCTTAGGTCACCTTTTAAATTAAAT  700

seq1  CACCTTTCTTTTCTATGGCTAAGTAGATATGGTGATGACGTAATACCAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTCTTTTCTATGGCTAAGTAGATATGGTGATGACGTAATACCAAC  750

seq1  ACTGCTGTGGTAGCATTTTTTTGGCTTCTTCTCTATGCTGGGCTTTCTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGTGGTAGCATTTTTTTGGCTTCTTCTCTATGCTGGGCTTTCTTC  800

seq1  TGAAACCTGGATACTAATTGCCTAAAACAATCTTGATAGCAATGCAATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCTGGATACTAATTGCCTAAAACAATCTTGATAGCAATGCAATGA  850

seq1  TTTATTATGATGATTTATTTCTACTGTCTAAAACAACCCGGGCTTAGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTATGATGATTTATTTCTACTGTCTAAAACAACCCGGGCTTAGAAT  900

seq1  GTTATTGCTATTGGAAACAGGCACAAAATTAGAAGAGATGGTACCCATCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGCTATTGGAAACAGGCACAAAATTAGAAGAGATGGTACCCATCT  950

seq1  ATAAATATAGTTATGTCTGGCTCCAGAGGGCCAATCTCTTAAACTTCTGG  1000
      |||||||||||||||||||||| |||||||||||||| |  |||||||||
seq2  ATAAATATAGTTATGTCTGGCTTCAGAGGGCCAATCT-TCTAACTTCTGG  999

seq1  AATGATTAATTAAATGAAATTATT-GATGAATGACTGTTTGTTCTTTTGC  1049
      ||||||||  |||||||||||||| |||| |||||||||   || |||||
seq2  AATGATTA--TAAATGAAATTATTGGATG-ATGACTGTT--GTCCTTTGC  1044

seq1  TGTGCTAAGCTTCCCCCTCCAAGGCA-GTTGCATTAGTAATTTAATTAAT  1098
      |||||| ||||   |||| | ||||| ||||||||||||| |||||| ||
seq2  TGTGCT-AGCT---CCCTTC-AGGCAGGTTGCATTAGTAA-TTAATT-AT  1087

seq1  CCTGTGCA  1106
      ||||||||
seq2  CCTGTGCA  1095