BAC Information

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BAC

Clone NameB6Ng01-244N09
Chromosome10 (Build37)
Map Location 17,632,465 - 17,768,706
singlet/doubletdoublet
Overlap geneHeca, 3110003A17Rik
Upstream geneLOC627511, Cited2, Txlnb, LOC665321
Downstream geneReps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp, Tnfaip3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-244N09.bB6Ng01-244N09.g
ACCGA053874GA053875
length1,1691,172
definitionB6Ng01-244N09.b B6Ng01-244N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,632,465 - 17,633,636)(17,767,541 - 17,768,706)
sequence
gaattcctgagaaccacacagaacatccacagaagactaccctgtaactg
caacctttctcttactctgaaagataagaaaagaaattgcatctgagaaa
caagaatgtttcttggttttttggcggcacatgcttttaaccccagcatt
tggggggcagagccaggaatatctcttctaggccagcctgatctacatag
tgagtgtctcaaaaaagcaagcacacaaaagatcctagaaattcaaaata
ctagaagagaaatctaaagaaacattccatttccagaaggtttaacagag
taacacataacagaaaaacacaggattttctttcccgtcaaaagaaagtc
agaaatgtcaagctaagaggtacaatatcacacattaagtggaaagagag
aaatttatcaaagttttgtatttataatacaaaagcaaagtttctccaaa
gtgaggatctaagtttctgtactcaatcaataatccaagacagcccacag
tctgtgaaggcagaggagctgagaaaccacaatatatagtaggatttcct
aacaggagagagagtaagggagaagtcaacttctttaaagaggacagaga
ttgggggttgggggttcagacttcaagacagtaacgaggtaagacaggag
atagtaaagaaacactttctaagtttccaaaaataaatgtttgtaattta
aaggactgcatgacccggctaggtaacaaccaagtgtttaggaatgaatg
aaggcattctcaaacttccaatgtcgcagcttctgagggtgtctgaggga
aaaagtaaagaaaagaaaatatgggttagaaggcaagacataaagcatga
gaaataagaaaggctttccttcaagtccagcaggtcctgagttcttcagg
acagaatagagagagcatagaaatgaaagccttcagaagagatgtttaca
gaagaaaagaaacttcaaaaaatgttaagtgtgtagaaatgctttagaaa
aagtggtttacaaagctgctagatgagagcactgccaagtttaacgagat
attacccccactctcaggccactggacttaagaacgctaaacaaccggtt
aggttctcaataatagtcttgcaggtcttgtaactgcacaagcctggtta
acagagagttgagaccttt
gaattccccagaaattgcccttaggagaagggagttgcctcacttacaag
tccaaggacagctgacacaagaactattcggagggcttaggagcctaacg
ttccctgaatagctttgggacattgggcttgatcaatcagttgattgtta
cagagtgtctctacctagctctggttgaactagacattgctatatagatc
aagctgacctcaaactcaccaagatctgcctgtgtctgcctcctaggtgc
tgggattcaaggtgtgtgccaccaggccatcttgtttagcaattttgaag
tgccacctcagctccagagatctcagggttgctggagacgtctgccactt
ctgcctcacagttttccctctgtccagttctgtgctttcttccttgttgc
tgttgttcctaacaatcaaggaacttcccatttccaagatcgctgtctca
agatttgtttcccaggaacctgacctaagttagtgacacacttctgcatt
cacttactgagttcctgctcgcaaccccttagacttattactgtaattat
tattacagcattgcaggactgaatattacataaacaaattatttcatcta
gctccactggagaagctgagctgctgctgcatcagactgatgctgggcta
taggtttgaaagccaagcaacagagctgcatccagctgctcagatgaaag
ggcagagtcaggtcaggacagtgatagatgaaggatgaaatgtccagaaa
gggtaaacaagacaggcaggtagactgtatcaacaagcagacactgagct
aaagtccccggggctgtcagatcctcggacccttgacacacactccagat
ggtttagaaaacaggctggcggggccatcacaatgatggtgagataggag
aagcagttacggacaggccccagcagagcaatagctgtctgtaaacactc
acgatgttcagctgatgcgccacagatcaaaggccttctgctcgatgact
tagataactgcgtgagtctctggagagaagcttttcttcagagcaagagt
acccttttcaccactaatgttctcttctgtactgtagcaattggttggat
agctttaaagattaattttcggggggacagatcatatcacagtgtgtgtt
ttgggggtgacccactattcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_17632465_17633636
seq2: B6Ng01-244N09.b_50_1218

seq1  GAATTCCTGAGAACCACACAGAACATCCACAGAAGACTACCCTGTAACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGAGAACCACACAGAACATCCACAGAAGACTACCCTGTAACTG  50

seq1  CAACCTTTCTCTTACTCTGAAAGATAAGAAAAGAAATTGCATCTGAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTTCTCTTACTCTGAAAGATAAGAAAAGAAATTGCATCTGAGAAA  100

seq1  CAAGAATGTTTCTTGGTTTTTTGGCGGCACATGCTTTTAACCCCAGCATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATGTTTCTTGGTTTTTTGGCGGCACATGCTTTTAACCCCAGCATT  150

seq1  TGGGGGGCAGAGCCAGGAATATCTCTTCTAGGCCAGCCTGATCTACATAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGGCAGAGCCAGGAATATCTCTTCTAGGCCAGCCTGATCTACATAG  200

seq1  TGAGTGTCTCAAAAAAGCAAGCACACAAAAGATCCTAGAAATTCAAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTCTCAAAAAAGCAAGCACACAAAAGATCCTAGAAATTCAAAATA  250

seq1  CTAGAAGAGAAATCTAAAGAAACATTCCATTTCCAGAAGGTTTAACAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGAGAAATCTAAAGAAACATTCCATTTCCAGAAGGTTTAACAGAG  300

seq1  TAACACATAACAGAAAAACACAGGATTTTCTTTCCCGTCAAAAGAAAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACACATAACAGAAAAACACAGGATTTTCTTTCCCGTCAAAAGAAAGTC  350

seq1  AGAAATGTCAAGCTAAGAGGTACAATATCACACATTAAGTGGAAAGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTCAAGCTAAGAGGTACAATATCACACATTAAGTGGAAAGAGAG  400

seq1  AAATTTATCAAAGTTTTGTATTTATAATACAAAAGCAAAGTTTCTCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATCAAAGTTTTGTATTTATAATACAAAAGCAAAGTTTCTCCAAA  450

seq1  GTGAGGATCTAAGTTTCTGTACTCAATCAATAATCCAAGACAGCCCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGATCTAAGTTTCTGTACTCAATCAATAATCCAAGACAGCCCACAG  500

seq1  TCTGTGAAGGCAGAGGAGCTGAGAAACCACAATATATAGTAGGATTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGAAGGCAGAGGAGCTGAGAAACCACAATATATAGTAGGATTTCCT  550

seq1  AACAGGAGAGAGAGTAAGGGAGAAGTCAACTTCTTTAAAGAGGACAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAGAGAGAGTAAGGGAGAAGTCAACTTCTTTAAAGAGGACAGAGA  600

seq1  TTGGGGGTTGGGGGTTCAGACTTCAAGACAGTAACGAGGTAAGACAGGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGTTGGGGGTTCAGACTTCAAGACAGTAACGAGGTAAGACAGGAG  650

seq1  ATAGTAAAGAAACACTTTCTAAGTTTCCAAAAATAAATGTTTGTAATTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTAAAGAAACACTTTCTAAGTTTCCAAAAATAAATGTTTGTAATTTA  700

seq1  AAGGACTGCATGACCCGGCTAGGTAACAACCAAGTGTTTAGGAATGAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACTGCATGACCCGGCTAGGTAACAACCAAGTGTTTAGGAATGAATG  750

seq1  AAGGCATTCTCAAACTTCCAATGTCGCAGCTTCTGAGGGTGTCTGAGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATTCTCAAACTTCCAATGTCGCAGCTTCTGAGGGTGTCTGAGGGA  800

seq1  AAAAGTAAAGAAAAGAAAATATGGGTTAGAAGGCAAGACATAAAGCATGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTAAAGAAAAGAAAATATGGGTTAGAAGGCAAGACATAAAGCATGA  850

seq1  GAAATAAGAAAGGCTTTCCTTCAAGTCCAGCAGGTCCTGAGTTCTTCAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGAAAGGCTTTCCTTCAAGTCCAGCAGGTCCTGAGTTCTTCAGG  900

seq1  ACAGAATAGAGAGAGCATAGAAATGAAAGCCTTCAGAAGAGATGTTTACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATAGAGAGAGCATAGAAATGAAAGCCTTCAGAAGAGATGTTTACA  950

seq1  GAAGAAAAGAAACTTCAAAAAATGTTAAGTGTGTAGAAATGCTTTAG-AA  999
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GAAGAAAAGAAACTTCAAAAAATGTTAAGTGTGTAGAAATGCTTTAGAAA  1000

seq1  AAGTGGTTTACAAAGCTGCTAGATGAGAGCAACTGCCCAAAGTTAAAACA  1049
      |||||||||||||||||||||||||||||| ||||||  ||||| ||  |
seq2  AAGTGGTTTACAAAGCTGCTAGATGAGAGC-ACTGCC--AAGTTTAACGA  1047

seq1  AAAAATAAATACACCACTCTCAGG-CACTTGAACCTTAAG-ACGCTAAAC  1097
       | | ||    | ||||||||||| |||| ||  |||||| |||||||||
seq2  GATATTA---CCCCCACTCTCAGGCCACTGGA--CTTAAGAACGCTAAAC  1092

seq1  CAACGGTTA-GTTCTCAATAATAAGTCTTCCCAGGTC-TGTGACTGCACC  1145
       | |||||| |||||||||||| ||||||  |||||| ||| |||||| |
seq2  AACCGGTTAGGTTCTCAATAAT-AGTCTT-GCAGGTCTTGTAACTGCA-C  1139

seq1  AAGCCTGGGTTACAGAG---TGAGACCTTT  1172
      |||||||| | ||||||   ||||||||||
seq2  AAGCCTGGTTAACAGAGAGTTGAGACCTTT  1169

seq1: chr10_17767541_17768706
seq2: B6Ng01-244N09.g_67_1238 (reverse)

seq1  AGGAATA--GGGTCACCC----AACACACACTGTGATATGA-CTGTCCCC  43
      |||||||  |||||||||    ||||||||||||||||||| |||| |||
seq2  AGGAATAGTGGGTCACCCCCAAAACACACACTGTGATATGATCTGT-CCC  49

seq1  CCCCAAAAATATACTTTAAAAATAATACAACAAATGGCTACAGTACAG-A  92
      ||| |||| ||  |||||||  | || |||| ||| |||||||||||| |
seq2  CCCGAAAATTAATCTTTAAAGCT-ATCCAACCAATTGCTACAGTACAGAA  98

seq1  GAGAACAATAGTGGTGAAAGGGTAACTTCTTTGCTCCTGAG-AAAGC-TC  140
      ||||||| ||||||||||| ||  |||   ||||||   || ||||| ||
seq2  GAGAACATTAGTGGTGAAAAGGGTACT--CTTGCTCTGAAGAAAAGCTTC  146

seq1  TCT-CAGAGACTCACGCAGTTATCTAAAGGTCATCGAGCAGAAGGCCTTT  189
      ||| |||||||||||||||||||||||  |||||||||||||||||||||
seq2  TCTCCAGAGACTCACGCAGTTATCTAA--GTCATCGAGCAGAAGGCCTTT  194

seq1  GATCTGTGGCGCATCAGCTG-ACATCGTGAGTGTTTACAGACAGCTATTG  238
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GATCTGTGGCGCATCAGCTGAACATCGTGAGTGTTTACAGACAGCTATTG  244

seq1  CTCTTGCTGGGGCCTGTCCTTAACTGCTTCTCCTATCTCACCATCATTGT  288
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTC-TGCTGGGGCCTGTCCGTAACTGCTTCTCCTATCTCACCATCATTGT  293

seq1  GATGGCCCCGCCAGCCTGTTTTCTAAACCATCTGGAGTGTGTGTCAAGGG  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCCCCGCCAGCCTGTTTTCTAAACCATCTGGAGTGTGTGTCAAGGG  343

seq1  TCCGAGGATCTGACAGCCCCGGGGACTTTAGCTCAGTGTCTGCTTGTTGA  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGGATCTGACAGCCCCGGGGACTTTAGCTCAGTGTCTGCTTGTTGA  393

seq1  TACAGTCTACCTGCCTGTCTTGTTTACCC-TTCTGGACATTTCATCCTTC  437
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TACAGTCTACCTGCCTGTCTTGTTTACCCTTTCTGGACATTTCATCCTTC  443

seq1  ATCTATCACTGTCCTGACCTGACTCTGCCCTTTCATCTGAGCAGCTGGAT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCACTGTCCTGACCTGACTCTGCCCTTTCATCTGAGCAGCTGGAT  493

seq1  GCAGCTCTGTTGCTTGGCTTTCAAACCTATAGCCCAGCATCAGTCTGATG  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCTCTGTTGCTTGGCTTTCAAACCTATAGCCCAGCATCAGTCTGATG  543

seq1  CAGCAGCAGCTCAGCTTCTCCAGTGGAGCTAGATGAAATAATTTGTTTAT  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCAGCTCAGCTTCTCCAGTGGAGCTAGATGAAATAATTTGTTTAT  593

seq1  GTAATATTCAGTCCTGCAATGCTGTAATAATAATTACAGTAATAAGTCTA  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATATTCAGTCCTGCAATGCTGTAATAATAATTACAGTAATAAGTCTA  643

seq1  AGGGGTTGCGAGCAGGAACTCAGTAAGTGAATGCAGAAGTGTGTCACTAA  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTTGCGAGCAGGAACTCAGTAAGTGAATGCAGAAGTGTGTCACTAA  693

seq1  CTTAGGTCAGGTTCCTGGGAAACAAATCTTGAGACAGCGATCTTGGAAAT  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGTCAGGTTCCTGGGAAACAAATCTTGAGACAGCGATCTTGGAAAT  743

seq1  GGGAAGTTCCTTGATTGTTAGGAACAACAGCAACAAGGAAGAAAGCACAG  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGTTCCTTGATTGTTAGGAACAACAGCAACAAGGAAGAAAGCACAG  793

seq1  AACTGGACAGAGGGAAAACTGTGAGGCAGAAGTGGCAGACGTCTCCAGCA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGACAGAGGGAAAACTGTGAGGCAGAAGTGGCAGACGTCTCCAGCA  843

seq1  ACCCTGAGATCTCTGGAGCTGAGGTGGCACTTCAAAATTGCTAAACAAGA  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGAGATCTCTGGAGCTGAGGTGGCACTTCAAAATTGCTAAACAAGA  893

seq1  TGGCCTGGTGGCACACACCTTGAATCCCAGCACCTAGGAGGCAGACACAG  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGGTGGCACACACCTTGAATCCCAGCACCTAGGAGGCAGACACAG  943

seq1  GCAGATCTTGGTGAGTTTGAGGTCAGCTTGATCTATATAGCAATGTCTAG  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATCTTGGTGAGTTTGAGGTCAGCTTGATCTATATAGCAATGTCTAG  993

seq1  TTCAACCAGAGCTAGGTAGAGACACTCTGTAACAATCAACTGATTGATCA  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCAGAGCTAGGTAGAGACACTCTGTAACAATCAACTGATTGATCA  1043

seq1  AGCCCAATGTCCCAAAGCTATTCAGGGAACGTTAGGCTCCTAAGCCCTCC  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAATGTCCCAAAGCTATTCAGGGAACGTTAGGCTCCTAAGCCCTCC  1093

seq1  GAATAGTTCTTGTGTCAGCTGTCCTTGGACTTGTAAGTGAGGCAACTCCC  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAGTTCTTGTGTCAGCTGTCCTTGGACTTGTAAGTGAGGCAACTCCC  1143

seq1  TTCTCCTAAGGGCAATTTCTGGGGAATTC  1166
      |||||||||||||||||||||||||||||
seq2  TTCTCCTAAGGGCAATTTCTGGGGAATTC  1172