BAC Information

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BAC

Clone NameB6Ng01-249A10
Chromosome10 (Build37)
Map Location 3,683,637 - 3,684,730
singlet/doubletsinglet
Overlap genenone
Upstream geneCnksr3, Oprm1, A130090K04Rik
Downstream geneLOC237252, LOC100041224, Rgs17, Mtrf1l, Fbxo5, LOC666395
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249A10.bB6Ng01-249A10.g
ACCGA056953GA056954
length1,1101,216
definitionB6Ng01-249A10.b B6Ng01-249A10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaagtcactgttgttaccttgactgagagagtggcccttgttctc
atgttaagtgaaatgatatttactgaatcatcattgtgtaccatggctga
gctgatagataactgtaaatcaaataccattgacatttagcagagatttc
aaccccaatgactgttccctgtatgtttattaaattgtgtttgattatgt
ccatatcatttcagcagctatcatgacatctttgtaaaatgtgtgtaatt
tttagtcctgatttctcttgaaacagtccttttttaaaatcttcaccttt
aatatgaaaaaaacaacataaagaaaattagtgtccatattccaagaccc
acatctccagtgagatacatggacctgtacaaattgtgatctcagaagca
gtagaataaattcaccatctcattacataacttagaaaagtatgtgtctc
cataacaaattgttttcaggtgtgaaatcatgtaagataggctcttgggg
aatcttaccagaattctctacccctgacccacgagtacaaaagtattgac
agtacctctttatgaggacgttcacaaatgaggtttttgtcgtaaaatgc
tcacacatccaggtttagtaagtcatatcacatgagtagacctggataac
tgaaagtatggagcctgaacatcaagaagaacttcacaagcaaagcacat
tgaatccaacaacaaggcagagaagccaggagacagcatattgcaatttc
aaaagaaaaacaaccacttggttgtcagaaaaacaaacaacaaaaaattc
ttcaagaacagttgtcttagggttttactgctgtgaacagaatccatgat
caaggcaacaacttataaggacaacatttaattggggctggcttacaggt
tcacaggtttcagcccatttatcatcaacgcaggagcatgacaatatccc
aggcagggcatggttgcaagaggagctgagagttctaacatcttcatctg
aaaggctgctagcagaatacctggccttcaaggcagctaggaacaagggt
attacagcccatgcccatgccctacagtgactccaccttactcctagcca
agggctcacc

gaattctgacataggtgagcctccaccagtgttccaacttcctagaaaat
cattgaagccaatgagcttggaattcagaaggaattcagtgagaaggtta
cctattcagtaacattcaaatttacatctagtagagcagatgaaactaat
taggcattacaaagaacagagctataatagctcagggctagtctgcagag
tgattacttaggacagtagctgagtcttaccctaacaagagaatacacaa
tggcccagggaataggttggtttatcatgaaaaagttaggcaatccctct
gagacaggtttcttcactaggcccaacgaaacagcataaatcaggcattt
actaagaacccctggtggtgggcttaacaatagactggctcccttagtgg
taaacacagcctggtcccctgccatcttttgatgtatacattccttttgt
attgtgtcactgtaacatagcagatgtgttctgtttacctggtttcttgt
tactcctctgtataagaagtttgttgctcgatttgacaaattacactcag
atacaatacattctcttgtgtcgtatttgtttgtcattcgccaactcctt
tgcccacttgccaccagagatccattccacatagataggagaccccaaaa
aggggatagtctgtggcacatgacaaaagtcttggaaagatcaggaattc
aaggcccttatctaaaaataataaaagcaatccacagcaaaccagtagcc
aacatcaaagtaaatggagagaagctggaagtaatcccactaaaatcagg
gactagacaaggctgcccactttctccctacctattcaatatagtaatag
agaagtcctagacagagcaattcgacaacaaaaggagatcaagaggatac
aaattggaaaggaagaagttaaaatatcactttttgcagatgatatgata
gtatataaagtgactccaaaattccaccagagaccactaacctgaataaa
tagcctttactgcagtatctggatataaattaacacacaaataattcaat
agccttttctaacacaattgataaaccgactggagaaagaaattaggtaa
acacaccttccacatagtcacaattattaatcctgggtgtggcactctta
cctataacgaatcttgtatgatagaacttcagctcatcgaagaattaagc
atctccagacagaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_3683637_3684730
seq2: B6Ng01-249A10.b_49_1158 (reverse)

seq1  GGTGAGCC--TTGCT-GGAGT-AGGT-GAGTCACTGTA-GGCATGGGCAT  44
      ||||||||  | ||| ||||| |||| ||||||||||| |||||||||||
seq2  GGTGAGCCCTTGGCTAGGAGTAAGGTGGAGTCACTGTAGGGCATGGGCAT  50

seq1  GGGCTGTAATACCCTTG-TCCTAGCTGCCTGGAA-GCCA-GTATTCTGCT  91
      ||||||||||||||||| |||||||||||| ||| |||| ||||||||||
seq2  GGGCTGTAATACCCTTGTTCCTAGCTGCCTTGAAGGCCAGGTATTCTGCT  100

seq1  AGCAGCC-TTCAGATGAAGATG-TAGAACTCTCAGCTCCTCTTGC-ACCA  138
      ||||||| |||||||||||||| |||||||||||||||||||||| ||||
seq2  AGCAGCCTTTCAGATGAAGATGTTAGAACTCTCAGCTCCTCTTGCAACCA  150

seq1  TG-CCTGCCT-GGATATTGTCATGCTCCTGCGTTGATGAT-AATGGGCTG  185
      || ||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  TGCCCTGCCTGGGATATTGTCATGCTCCTGCGTTGATGATAAATGGGCTG  200

seq1  -AACCTGTGAACCTGTAAGCCAGCCCCAATTAAATGTTGTCCTTATAAGT  234
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGTGAACCTGTAAGCCAGCCCCAATTAAATGTTGTCCTTATAAGT  250

seq1  TGTTGCCTTGATCATGGATTCTGTTCACAGCAGTAAAACCCTAAGACAAC  284
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCCTTGATCATGGATTCTGTTCACAGCAGTAAAACCCTAAGACAAC  300

seq1  TGTTCTTGAAGAATTTTTTGTTGTTTGTTTTTCTGACAACCAAGTGGTTG  334
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTTGAAGAATTTTTTGTTGTTTGTTTTTCTGACAACCAAGTGGTTG  350

seq1  TTTTTCTTTTGAAATTGCAATATGCTGTCTCCTGGCTTCTCTGCCTTGTT  384
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTTTGAAATTGCAATATGCTGTCTCCTGGCTTCTCTGCCTTGTT  400

seq1  GTTGGATTCAATGTGCTTTGCTTGTGAAGTTCTTCTTGATGTTCAGGCTC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGATTCAATGTGCTTTGCTTGTGAAGTTCTTCTTGATGTTCAGGCTC  450

seq1  CATACTTTCAGTTATCCAGGTCTACTCATGTGATATGACTTACTAAACCT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTTTCAGTTATCCAGGTCTACTCATGTGATATGACTTACTAAACCT  500

seq1  GGATGTGTGAGCATTTTACGACAAAAACCTCATTTGTGAACGTCCTCATA  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGTGAGCATTTTACGACAAAAACCTCATTTGTGAACGTCCTCATA  550

seq1  AAGAGGTACTGTCAATACTTTTGTACTCGTGGGTCAGGGGTAGAGAATTC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTACTGTCAATACTTTTGTACTCGTGGGTCAGGGGTAGAGAATTC  600

seq1  TGGTAAGATTCCCCAAGAGCCTATCTTACATGATTTCACACCTGAAAACA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAAGATTCCCCAAGAGCCTATCTTACATGATTTCACACCTGAAAACA  650

seq1  ATTTGTTATGGAGACACATACTTTTCTAAGTTATGTAATGAGATGGTGAA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTATGGAGACACATACTTTTCTAAGTTATGTAATGAGATGGTGAA  700

seq1  TTTATTCTACTGCTTCTGAGATCACAATTTGTACAGGTCCATGTATCTCA  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCTACTGCTTCTGAGATCACAATTTGTACAGGTCCATGTATCTCA  750

seq1  CTGGAGATGTGGGTCTTGGAATATGGACACTAATTTTCTTTATGTTGTTT  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGATGTGGGTCTTGGAATATGGACACTAATTTTCTTTATGTTGTTT  800

seq1  TTTTCATATTAAAGGTGAAGATTTTAAAAAAGGACTGTTTCAAGAGAAAT  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATATTAAAGGTGAAGATTTTAAAAAAGGACTGTTTCAAGAGAAAT  850

seq1  CAGGACTAAAAATTACACACATTTTACAAAGATGTCATGATAGCTGCTGA  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACTAAAAATTACACACATTTTACAAAGATGTCATGATAGCTGCTGA  900

seq1  AATGATATGGACATAATCAAACACAATTTAATAAACATACAGGGAACAGT  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATATGGACATAATCAAACACAATTTAATAAACATACAGGGAACAGT  950

seq1  CATTGGGGTTGAAATCTCTGCTAAATGTCAATGGTATTTGATTTACAGTT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGGTTGAAATCTCTGCTAAATGTCAATGGTATTTGATTTACAGTT  1000

seq1  ATCTATCAGCTCAGCCATGGTACACAATGATGATTCAGTAAATATCATTT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATCAGCTCAGCCATGGTACACAATGATGATTCAGTAAATATCATTT  1050

seq1  CACTTAACATGAGAACAAGGGCCACTCTCTCAGTCAAGGTAACAACAGTG  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAACATGAGAACAAGGGCCACTCTCTCAGTCAAGGTAACAACAGTG  1100

seq1  ACTTGAATTC  1094
      ||||||||||
seq2  ACTTGAATTC  1110


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