BAC Information

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BAC

Clone NameB6Ng01-249H20
Chromosome10 (Build37)
Map Location 72,768,426 - 72,912,280
singlet/doubletdoublet
Overlap geneLOC432471
Upstream geneLOC100040505, Zwint, LOC544705
Downstream geneLOC100039981, LOC623191, Pcdh15
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249H20.bB6Ng01-249H20.g
ACCGA057296GA057297
length1,2101,107
definitionB6Ng01-249H20.b B6Ng01-249H20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,911,058 - 72,912,280)(72,768,426 - 72,769,532)
sequence
gaattcttagtcaatacttaaataacatgtgaggaaaactagcatatgac
atggataacataaataaaagaaatatctgaggacacagtaatgaaagaaa
acacacaggaatttcttcaaacctagagtggttttcttcagaaagacact
aacaagttaattgaacagaacaggatgtaataatgctattatcaataata
taggcaaaacataaagagctcttgattgtaaaataacaacacacagagcc
actggacatggtgtttgacaataaaataaactcaggcactatttaaaatg
ttgtaagttaaaattagaaaatgtcaaaaaagcagaacaaatgaatgaga
cagaaatatgattcgtagtcctgtaaacacgaataaacaggatcaatgga
gaattacaggcaaagcaagggctcaggggtggctgagtgatgctgcccct
ccggaggacccaggttcagtctaggcatctacatggcgatccacaaccac
ctgtagtggcacttccagtggtccaaggcttctgcaggcaggtacacagg
cgctgcatgcacagggtacacagacatacaagcagacaagcacacctaaa
ataaaataaataatcggagaaagaaaagggtaagagagctgagcacagcg
gctcatatttgtaattatggcagctaggaaagaaggaataccacaagtct
gaaaacaactgatcaccatagtgagtttgaagcaagcctcatcaacagaa
cctaaacctttcttgaaactaaaaccaaccaaagatatgtatatgggaaa
ataacggacgaaaggttaacaaacatggctaaaattttttccttactact
aaaaatcgtgatttgtaaatttaaaaatactcagctcagtgtaaccatta
agcatacacactctgagtcagcatgttacacagagtggattaaaggaaaa
acacaattagaatgcaatgttgtcagacacctcaatgggttctacaacat
aaaaggaatggacacatatataattgtctatgggtttctaatttatacta
gacaaacttggaatataaacatcatcagaagcaacctctaggaaatcata
ttaggtcttgttccaccaaaaaagaacccaagttacaggaaaaccctcca
ggagattagacaggtacactatgatagaagtaagtaatgggaggcccagt
gagaggtgtg

gaattctcctgaaacatcccatcactaatttacaaaccctactcaacttg
tgctggcagaacatcataaaagaagagtggggacacagatacctataggg
caaagcttggttttcagatgtttgtatagacagtgtttcttctattgtgg
aattataggcacagaaccagataacaggttcttctgaaaagaacatgttt
ccactaaagaactttatgtggtgcatcttctattgatgcaatggatgatc
atctttgtgaatcatattttagccacgagcaacacaaaacaatttcatat
ctaagatttttctgcaggcatccttcatccatctcttcgatttcactaag
ctacacctggattatgtagcttctgacctttgagtcttatgcctgataag
acctagggcttgaagtagcatctgctacctaggcagtgccaagtgcttaa
acatcaaatagttcatattctcatctgcaaaatataggattacattctgt
tggttatataataaagatattcagataatgttctggaaaaggctcactgt
gaaattgttgtcttactttccctttagaatttcatgatttttgtaggtgg
aatttattccctgtaacttgcatcaggcgttttaagtagagagccattct
tctgatactgatacaaaatgaatattgcaaagtttgtatgagattatata
aaatgtgactaatttatgactgtaagttaaaaacctcaagtcttgattgt
aaaagaactattaagaaagtccacatagcattagctttgttctttttata
ttaaattacattttaaggaagtattttataaaagcaaataaggcatttgt
ttatacacatatcaatgctatcaattctctactggatttgttttacaaag
tataagctgtcctggtttatggtaacttcttaaatcacatttatacataa
ttgtttctctataaaacatacttccatttttttgtgtttaaataccaata
tatattctttttaagcagcaagtgtttgcgtttacttattattgtgcatt
atttctatcttctaaaaactgcctgattattttttgcacaatctgatgct
gaccaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_72911058_72912280
seq2: B6Ng01-249H20.b_48_1257 (reverse)

seq1  CACAC--CTCACCTGGCCTCCCATCCCTCTACTTCTTTTTCCCTTAGTTG  48
      |||||  |||||  ||||||||||  || ||||||| |    | ||   |
seq2  CACACCTCTCACTGGGCCTCCCATTACT-TACTTCTAT----CATA---G  42

seq1  TTTCCTTGTCT-ATCT-CTTGAGGGTTTTCCTTTGTTTACTTGTGTCTTT  96
      | | | ||||| |||| || ||||||||||||    | ||||| ||  ||
seq2  TGTACCTGTCTAATCTCCTGGAGGGTTTTCCT---GTAACTTGGGTTCTT  89

seq1  TTTTGGTGGACCAGACCCTAATATGATTTCCTAAGAGTTTGCTTCTGAAT  146
      |||||||||| ||   |||||||||||||||| |||| ||||||||| ||
seq2  TTTTGGTGGAACAAGACCTAATATGATTTCCT-AGAGGTTGCTTCTG-AT  137

seq1  GATGTTTATATTCCAAGTTTGTCTAGTATAAATTTAGAAACCCAATAAGA  196
      |||||||||||||||||||||||||||||||| |||||||||||   |||
seq2  GATGTTTATATTCCAAGTTTGTCTAGTATAAA-TTAGAAACCCA--TAGA  184

seq1  CAATTATTATATGTGTCCATTCCTTTTATGTTGTAGAA-CCATTGAGGTG  245
      |||||| ||||||||||||||||||||||||||||||| |||||||||||
seq2  CAATTA-TATATGTGTCCATTCCTTTTATGTTGTAGAACCCATTGAGGTG  233

seq1  TCTGACAACATTGCATTCTAATTTGTGTTTTTCCTTTAATCCACTCTGTG  295
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCTGACAACATTGCATTCTAA-TTGTGTTTTTCCTTTAATCCACTCTGTG  282

seq1  TAACATGCTGACTCAGAGTGTGTATGCTTAATGGTTACACTGAGCTGAGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGCTGACTCAGAGTGTGTATGCTTAATGGTTACACTGAGCTGAGT  332

seq1  ATTTTTAAATTTACAAATCACGATTTTTAGTAGTAAGGAAAAAATTTTAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAATTTACAAATCACGATTTTTAGTAGTAAGGAAAAAATTTTAG  382

seq1  CCATGTTTGTTAACCTTTCGTCCGTTATTTTCCCATATACATATCTTTGG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTTTGTTAACCTTTCGTCCGTTATTTTCCCATATACATATCTTTGG  432

seq1  TTGGTTTTAGTTTCAAGAAAGGTTTAGGTTCTGTTGATGAGGCTTGCTTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTTTAGTTTCAAGAAAGGTTTAGGTTCTGTTGATGAGGCTTGCTTC  482

seq1  AAACTCACTATGGTGATCAGTTGTTTTCAGACTTGTGGTATTCCTTCTTT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCACTATGGTGATCAGTTGTTTTCAGACTTGTGGTATTCCTTCTTT  532

seq1  CCTAGCTGCCATAATTACAAATATGAGCCGCTGTGCTCAGCTCTCTTACC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCTGCCATAATTACAAATATGAGCCGCTGTGCTCAGCTCTCTTACC  582

seq1  CTTTTCTTTCTCCGATTATTTATTTTATTTTAGGTGTGCTTGTCTGCTTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTCTCCGATTATTTATTTTATTTTAGGTGTGCTTGTCTGCTTG  632

seq1  TATGTCTGTGTACCCTGTGCATGCAGCGCCTGTGTACCTGCCTGCAGAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTGTGTACCCTGTGCATGCAGCGCCTGTGTACCTGCCTGCAGAAG  682

seq1  CCTTGGACCACTGGAAGTGCCACTACAGGTGGTTGTGGATCGCCATGTAG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGACCACTGGAAGTGCCACTACAGGTGGTTGTGGATCGCCATGTAG  732

seq1  ATGCCTAGACTGAACCTGGGTCCTCCGGAGGGGCAGCATCACTCAGCCAC  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTAGACTGAACCTGGGTCCTCCGGAGGGGCAGCATCACTCAGCCAC  782

seq1  CCCTGAGCCCTTGCTTTGCCTGTAATTCTCCATTGATCCTGTTTATTCGT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGCCCTTGCTTTGCCTGTAATTCTCCATTGATCCTGTTTATTCGT  832

seq1  GTTTACAGGACTACGAATCATATTTCTGTCTCATTCATTTGTTCTGCTTT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTACAGGACTACGAATCATATTTCTGTCTCATTCATTTGTTCTGCTTT  882

seq1  TTTGACATTTTCTAATTTTAACTTACAACATTTTAAATAGTGCCTGAGTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACATTTTCTAATTTTAACTTACAACATTTTAAATAGTGCCTGAGTT  932

seq1  TATTTTATTGTCAAACACCATGTCCAGTGGCTCTGTGTGTTGTTATTTTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTGTCAAACACCATGTCCAGTGGCTCTGTGTGTTGTTATTTTA  982

seq1  CAATCAAGAGCTCTTTATGTTTTGCCTATATTATTGATAATAGCATTATT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAAGAGCTCTTTATGTTTTGCCTATATTATTGATAATAGCATTATT  1032

seq1  ACATCCTGTTCTGTTCAATTAACTTGTTAGTGTCTTTCTGAAGAAAACCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCCTGTTCTGTTCAATTAACTTGTTAGTGTCTTTCTGAAGAAAACCA  1082

seq1  CTCTAGGTTTGAAGAAATTCCTGTGTGTTTTCTTTCATTACTGTGTCCTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGGTTTGAAGAAATTCCTGTGTGTTTTCTTTCATTACTGTGTCCTC  1132

seq1  AGATATTTCTTTTATTTATGTTATCCATGTCATATGCTAGTTTTCCTCAC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATATTTCTTTTATTTATGTTATCCATGTCATATGCTAGTTTTCCTCAC  1182

seq1  ATGTTATTTAAGTATTGACTAAGAATTC  1223
      ||||||||||||||||||||||||||||
seq2  ATGTTATTTAAGTATTGACTAAGAATTC  1210


seq1: chr10_72768426_72769532
seq2: B6Ng01-249H20.g_66_1172

seq1  GAATTCTCCTGAAACATCCCATCACTAATTTACAAACCCTACTCAACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGAAACATCCCATCACTAATTTACAAACCCTACTCAACTTG  50

seq1  TGCTGGCAGAACATCATAAAAGAAGAGTGGGGACACAGATACCTATAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGCAGAACATCATAAAAGAAGAGTGGGGACACAGATACCTATAGGG  100

seq1  CAAAGCTTGGTTTTCAGATGTTTGTATAGACAGTGTTTCTTCTATTGTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCTTGGTTTTCAGATGTTTGTATAGACAGTGTTTCTTCTATTGTGG  150

seq1  AATTATAGGCACAGAACCAGATAACAGGTTCTTCTGAAAAGAACATGTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATAGGCACAGAACCAGATAACAGGTTCTTCTGAAAAGAACATGTTT  200

seq1  CCACTAAAGAACTTTATGTGGTGCATCTTCTATTGATGCAATGGATGATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTAAAGAACTTTATGTGGTGCATCTTCTATTGATGCAATGGATGATC  250

seq1  ATCTTTGTGAATCATATTTTAGCCACGAGCAACACAAAACAATTTCATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGTGAATCATATTTTAGCCACGAGCAACACAAAACAATTTCATAT  300

seq1  CTAAGATTTTTCTGCAGGCATCCTTCATCCATCTCTTCGATTTCACTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGATTTTTCTGCAGGCATCCTTCATCCATCTCTTCGATTTCACTAAG  350

seq1  CTACACCTGGATTATGTAGCTTCTGACCTTTGAGTCTTATGCCTGATAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACCTGGATTATGTAGCTTCTGACCTTTGAGTCTTATGCCTGATAAG  400

seq1  ACCTAGGGCTTGAAGTAGCATCTGCTACCTAGGCAGTGCCAAGTGCTTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGGGCTTGAAGTAGCATCTGCTACCTAGGCAGTGCCAAGTGCTTAA  450

seq1  ACATCAAATAGTTCATATTCTCATCTGCAAAATATAGGATTACATTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAAATAGTTCATATTCTCATCTGCAAAATATAGGATTACATTCTGT  500

seq1  TGGTTATATAATAAAGATATTCAGATAATGTTCTGGAAAAGGCTCACTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATATAATAAAGATATTCAGATAATGTTCTGGAAAAGGCTCACTGT  550

seq1  GAAATTGTTGTCTTACTTTCCCTTTAGAATTTCATGATTTTTGTAGGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGTTGTCTTACTTTCCCTTTAGAATTTCATGATTTTTGTAGGTGG  600

seq1  AATTTATTCCCTGTAACTTGCATCAGGCGTTTTAAGTAGAGAGCCATTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTATTCCCTGTAACTTGCATCAGGCGTTTTAAGTAGAGAGCCATTCT  650

seq1  TCTGATACTGATACAAAATGAATATTGCAAAGTTTGTATGAGATTATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATACTGATACAAAATGAATATTGCAAAGTTTGTATGAGATTATATA  700

seq1  AAATGTGACTAATTTATGACTGTAAGTTAAAAACCTCAAGTCTTGATTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGACTAATTTATGACTGTAAGTTAAAAACCTCAAGTCTTGATTGT  750

seq1  AAAAGAACTATTAAGAAAGTCCACATAGCATTAGCTTTGTTCTTTTTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAACTATTAAGAAAGTCCACATAGCATTAGCTTTGTTCTTTTTATA  800

seq1  TTAAATTACATTTTAAGGAAGTATTTTATAAAAGCAAATAAGGCATTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTACATTTTAAGGAAGTATTTTATAAAAGCAAATAAGGCATTTGT  850

seq1  TTATACACATATCAATGCTATCAATTCTCTACTGGATTTGTTTTACAAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACACATATCAATGCTATCAATTCTCTACTGGATTTGTTTTACAAAG  900

seq1  TATAAGCTGTCCTGGTTTATGGTAACTTCTTAAATCACATTTATACATAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGCTGTCCTGGTTTATGGTAACTTCTTAAATCACATTTATACATAA  950

seq1  TTGTTTCTCTATAAAACATACTTCCATTTTTTTGTGTTTAAATACCAAAT  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTGTTTCTCTATAAAACATACTTCCATTTTTTTGTGTTTAAATACC-AAT  999

seq1  ATTATATTCTTTTTTAAGCAGCAAGTGTTTGCGTTTACTTA-TATTGTGC  1049
      | ||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  A-TATATTC-TTTTTAAGCAGCAAGTGTTTGCGTTTACTTATTATTGTGC  1047

seq1  ATTATTCTAATCTCTTAAAAAACTGCTGAATTA--TTTTGCAC-ATCTGA  1096
      ||||||   |||| |  |||||||||   ||||  |||||||| ||||||
seq2  ATTATTTCTATCT-TCTAAAAACTGCCTGATTATTTTTTGCACAATCTGA  1096

seq1  TGCTGACCAAG  1107
      |||||||||||
seq2  TGCTGACCAAG  1107


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