BAC Information

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BAC

Clone NameB6Ng01-249M09
Chromosome10 (Build37)
Map Location 42,831,048 - 42,975,647
singlet/doubletdoublet
Overlap geneSobp, 9030612E09Rik, Pdss2
Upstream geneFoxo3a, Lace1, LOC666540, Snx3, Nr2e1, c222389, Ostm1, Sec63, Scml4, EG666569, C230040G06
Downstream geneLOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1, LOC546475, Speer5-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-249M09.bB6Ng01-249M09.g
ACCGA057505GA057506
length1,176975
definitionB6Ng01-249M09.b B6Ng01-249M09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,831,048 - 42,832,234)(42,974,677 - 42,975,647)
sequence
gaattctggttgtctgaattcagccgtcaatacattgaaatgggttctag
gagctccacctgccatctgcctcctacttatctctctgggttttaattca
ttcttgtgcatgcatgcatgcatatatgagtggatgcatgagcgagcaca
tgtgtgcccgtgcatgtggaggtcagagagtgacaccaggggtccctcaa
tcaccttcccaccctatttttttttttgaggcagggtctctcagtgaacc
tggaggtcgctgagttggctagattggctggccagcggatcccagggatc
cttctgttctggctccccagaactggggactcgggtggttaatattcttt
tctatttattaaataatccaggattgtttttttaaagccctaaagtttat
atcaccaatataaggtttcttctggtgccaaggattctttcttattgtag
tcttttaatcatgttcccttgacactgggcttgaagccgtgttgggttta
cagacctggtgtctgctgcctttccatttgattcatctgctctcttacaa
tggcaccaaataaagcgaaagtatgaagccgtaaaagtaaatcctgcaca
tgggatgtgggtcaccttctctctatcctgttcacctggaagtgatactg
cctcttcctgaagcacagcccttccttcgttgcacagaacaacactgctg
tagttggaccataagtggcaccccaagacgagagtggtaaaggcttgagc
cccggggtgggactattgagaagcggtatatcctataggaggcagaaccc
agatgacgtcagtggatgacatcatcccctgcagggtgctgtgggacccc
tgtcctttcctttcttttttgtttcctggccaggagatgagcagtttcac
cctactgtgccctccttctataatgttctttactgcaacaatctcaaaat
gaagagggcctcctgaaccggagccagataagcatcatcataaagtggtc
atcttctggtattgttacaggaaagaaccgctgaccaacacaaggaagga
acattttcccaccgagctcatccgattgaccttgaagcattgccaccaga
gtaccggagggccggagagcgaagaagcctccagcctatcatggtcatag
caactgcttgcaattcagcctgcctc
gaattcactcctagtcactcccattctcggggtgtaatagtggggtgatg
ggcaagcaacgaatcgggagctgtcacgccatatcaggtgctgaaacgtc
acgctgcgggttataaaagcagcgccattttcccagttcgggatcttcct
gagaagcaagcaataaagcttttgccgcggaagattctggtttgttgcgt
ctttcttgccggtcgagcgagacgcaatagttgcatattttttcctgatg
cttagatctatggctttttgttttgttttggggagggtgtgtttgatttt
tgagacagggtttttctatttagacctggctgtcctgaaactcactctgt
agaccacgctggccttgaactaactcagagatctgcttacctctctcacc
tgaatgctggcattaaaggcatatggcacaaaaccttgctccacgttcat
ttttaaatcctcagaagaaaacttgttactgtgtgacacagggtcttgtt
acgtggcccacactggccttcagttcaccctgccccagcttcccaaagtg
ctggacttttaaaggagtgaaccaccacactttattgctatgtcctttat
acagaaaattctaaagtaacataactgattgtagccaaaatgtttgatat
ataatgaaagtaacttaaacgtggctcattagcttaaatttggagtgaaa
aaatcactaacatatatatttttgatgcagaaatgatctttaaaaattgt
ctatttcagttttcctagttgaaccatgtaatctaaagtcctggtaatca
catatgtacattagaattaattattatcttccgaaatgactctttttaca
tttttaaaatacttctccttgtaatattctttattctgaagaagtttaga
ctatttagtcagcttccctatatggtaaacattttcaccctttgggtctc
atttaaaaattgtcttaattaatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_42831048_42832234
seq2: B6Ng01-249M09.b_47_1222

seq1  GAATTCTGGTTGTCTGAATTCAGCCGTCAATACATTGAAATGGGTTCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGTTGTCTGAATTCAGCCGTCAATACATTGAAATGGGTTCTAG  50

seq1  GAGCTCCACCTGCCATCTGCCTCCTACTTATCTCTCTGGGTTTTAATTCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCACCTGCCATCTGCCTCCTACTTATCTCTCTGGGTTTTAATTCA  100

seq1  TTCTTGTGCATGCATGCATGCATATATGAGTGGATGCATGAGCGAGCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGCATGCATGCATGCATATATGAGTGGATGCATGAGCGAGCACA  150

seq1  TGTGTGCCCGTGCATGTGGAGGTCAGAGAGTGACACCAGGGGTCCCTCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCCCGTGCATGTGGAGGTCAGAGAGTGACACCAGGGGTCCCTCAA  200

seq1  TCACCTTCCCACCCTATTTTTTTTTTTGAGGCAGGGTCTCTCAGTGAACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTCCCACCCTATTTTTTTTTTTGAGGCAGGGTCTCTCAGTGAACC  250

seq1  TGGAGGTCGCTGAGTTGGCTAGATTGGCTGGCCAGCGGATCCCAGGGATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTCGCTGAGTTGGCTAGATTGGCTGGCCAGCGGATCCCAGGGATC  300

seq1  CTTCTGTTCTGGCTCCCCAGAACTGGGGACTCGGGTGGTTAATATTCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGTTCTGGCTCCCCAGAACTGGGGACTCGGGTGGTTAATATTCTTT  350

seq1  TCTATTTATTAAATAATCCAGGATTGTTTTTTTAAAGCCCTAAAGTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTATTAAATAATCCAGGATTGTTTTTTTAAAGCCCTAAAGTTTAT  400

seq1  ATCACCAATATAAGGTTTCTTCTGGTGCCAAGGATTCTTTCTTATTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCAATATAAGGTTTCTTCTGGTGCCAAGGATTCTTTCTTATTGTAG  450

seq1  TCTTTTAATCATGTTCCCTTGACACTGGGCTTGAAGCCGTGTTGGGTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTAATCATGTTCCCTTGACACTGGGCTTGAAGCCGTGTTGGGTTTA  500

seq1  CAGACCTGGTGTCTGCTGCCTTTCCATTTGATTCATCTGCTCTCTTACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCTGGTGTCTGCTGCCTTTCCATTTGATTCATCTGCTCTCTTACAA  550

seq1  TGGCACCAAATAAAGCGAAAGTATGAAGCCGTAAAAGTAAATCCTGCACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACCAAATAAAGCGAAAGTATGAAGCCGTAAAAGTAAATCCTGCACA  600

seq1  TGGGATGTGGGTCACCTTCTCTCTATCCTGTTCACCTGGAAGTGATACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATGTGGGTCACCTTCTCTCTATCCTGTTCACCTGGAAGTGATACTG  650

seq1  CCTCTTCCTGAAGCACAGCCCTTCCTTCGTTGCACAGAACAACACTGCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTTCCTGAAGCACAGCCCTTCCTTCGTTGCACAGAACAACACTGCTG  700

seq1  TAGTTGGACCATAAGTGGCACCCCAAGACGAGAGTGGTAAAGGCTTGAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGGACCATAAGTGGCACCCCAAGACGAGAGTGGTAAAGGCTTGAGC  750

seq1  CCCGGGGTGGGACTATTGAGAAGCGGTATATCCTATAGGAGGCAGAACCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGGGTGGGACTATTGAGAAGCGGTATATCCTATAGGAGGCAGAACCC  800

seq1  AGATGACGTCAGTGGATGACATCATCCCCTGCAGGGTGCTGTGGGACCCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGACGTCAGTGGATGACATCATCCCCTGCAGGGTGCTGTGGGACCCC  850

seq1  TGTCCTTTCCTTTCTTTTTTGTTTCCTGGCCAGGAGATGAGCAGTTTCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTTCCTTTCTTTTTTGTTTCCTGGCCAGGAGATGAGCAGTTTCAC  900

seq1  CCTACTGTGCCCTCCTTCTATAATGTTCTTTACTGCAACAATCTCAAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGTGCCCTCCTTCTATAATGTTCTTTACTGCAACAATCTCAAAAT  950

seq1  GAAGAGGGCCTCCTGAACC-GAGCCAAGATAAGCATCATCATAAAGTGGT  999
      ||||||||||||||||||| ||||| ||||||||||||||||||||||||
seq2  GAAGAGGGCCTCCTGAACCGGAGCC-AGATAAGCATCATCATAAAGTGGT  999

seq1  CATC-TCTGGTATTTGTTACAGGGATAGAA-CGCTGACCAACACAAGGAA  1047
      |||| ||||||| |||||||| ||| |||| |||||||||||||||||||
seq2  CATCTTCTGGTA-TTGTTACA-GGAAAGAACCGCTGACCAACACAAGGAA  1047

seq1  GGAAACATTTTCCCAACCCAGAAGCTCATCCGATTGAACCCTGAAGCA-T  1096
      || |||||||||||| |     |||||||||||||| ||| ||||||| |
seq2  GG-AACATTTTCCCACC----GAGCTCATCCGATTG-ACCTTGAAGCATT  1091

seq1  GCCACCAGAGTACCGGAGGGC--GAGAGCAGAAAGAGCTCACAAGCACTA  1144
      |||||||||||||||||||||  |||||| |||  ||| | | ||| |||
seq2  GCCACCAGAGTACCGGAGGGCCGGAGAGC-GAAGAAGC-CTCCAGC-CTA  1138

seq1  TCCATGGTCATTAGCAACCTGCTTGCATTTCCAGGCCTGCCTC  1187
      | |||||||| |||||| ||||||||| |||   |||||||||
seq2  T-CATGGTCA-TAGCAA-CTGCTTGCAATTC--AGCCTGCCTC  1176

seq1: chr10_42974677_42975647
seq2: B6Ng01-249M09.g_68_1042 (reverse)

seq1  TCATTAATTAAAAACAATTTTTAAATGAGACCCAAAGGGTGGAAAAATGT  50
      ||||||||| || ||||||||||||||||||||||||||||  |||||||
seq2  TCATTAATT-AAGACAATTTTTAAATGAGACCCAAAGGGTG--AAAATGT  47

seq1  GTAACATATA-GGAAGCTGACTATATTAGTCTAAAACTACTTCAGAATAA  99
       || |||||| |||||||||||| | |||||| ||||| |||||||||||
seq2  TTACCATATAGGGAAGCTGACTA-AATAGTCT-AAACTTCTTCAGAATAA  95

seq1  AGAATATTACAAAGAGAAGTATTTT-AAAATGT-AAAAGAGTCATTTCGT  147
      |||||||||||| |||||||||||| ||||||| ||||||||||||||| 
seq2  AGAATATTACAAGGAGAAGTATTTTAAAAATGTAAAAAGAGTCATTTCG-  144

seq1  GAAGAT-ATAATTATTCTTAATGTACATATGTGA-TACCAGGACTTTAGA  195
      |||||| ||||||| |  |||||||||||||||| |||||||||||||||
seq2  GAAGATAATAATTAATTCTAATGTACATATGTGATTACCAGGACTTTAGA  194

seq1  TTACATGGTTCAACTAGG-AAACTGAAATAGACAATTTTT-AAGATCATT  243
      |||||||||||||||||| ||||||||||||||||||||| |||||||||
seq2  TTACATGGTTCAACTAGGAAAACTGAAATAGACAATTTTTAAAGATCATT  244

seq1  TCTGCATCAAAAATATATATGTTAGTGA-TTTTTCACTCC-AATTTAAGC  291
      |||||||||||||||||||||||||||| ||||||||||| |||||||||
seq2  TCTGCATCAAAAATATATATGTTAGTGATTTTTTCACTCCAAATTTAAGC  294

seq1  TAATGAGCCACGTTTAAGTTACTTTCATTATATATC-AACATTTTGGCTA  340
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TAATGAGCCACGTTTAAGTTACTTTCATTATATATCAAACATTTTGGCTA  344

seq1  CAATCAGTTATGTTACTTTAGAATTTTCTGTATAAAGGACATAGCAATAA  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGTTATGTTACTTTAGAATTTTCTGTATAAAGGACATAGCAATAA  394

seq1  AGTGTGGTGGTTCACTCCTTTAAAAGTCCAGCACTTTGGGAAGCTGGGGC  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGGTGGTTCACTCCTTTAAAAGTCCAGCACTTTGGGAAGCTGGGGC  444

seq1  AGGGTGAACTGAAGGCCAGTGTGGGCCACGTAACAAGACCCTGTGTCACA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGAACTGAAGGCCAGTGTGGGCCACGTAACAAGACCCTGTGTCACA  494

seq1  CAGTAACAAGTTTTCTTCTGAGGATTTAAAAATGAACGTGGAGCAAGGTT  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACAAGTTTTCTTCTGAGGATTTAAAAATGAACGTGGAGCAAGGTT  544

seq1  TTGTGCCATATGCCTTTAATGCCAGCATTCAGGTGAGAGAGGTAAGCAGA  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCCATATGCCTTTAATGCCAGCATTCAGGTGAGAGAGGTAAGCAGA  594

seq1  TCTCTGAGTTAGTTCAAGGCCAGCGTGGTCTACAGAGTGAGTTTCAGGAC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGAGTTAGTTCAAGGCCAGCGTGGTCTACAGAGTGAGTTTCAGGAC  644

seq1  AGCCAGGTCTAAATAGAAAAACCCTGTCTCAAAAATCAAACACACCCTCC  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGTCTAAATAGAAAAACCCTGTCTCAAAAATCAAACACACCCTCC  694

seq1  CCAAAACAAAACAAAAAGCCATAGATCTAAGCATCAGGAAAAAATATGCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACAAAACAAAAAGCCATAGATCTAAGCATCAGGAAAAAATATGCA  744

seq1  ACTATTGCGTCTCGCTCGACCGGCAAGAAAGACGCAACAAACCAGAATCT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTGCGTCTCGCTCGACCGGCAAGAAAGACGCAACAAACCAGAATCT  794

seq1  TCCGCGGCAAAAGCTTTATTGCTTGCTTCTCAGGAAGATCCCGAACTGGG  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCGGCAAAAGCTTTATTGCTTGCTTCTCAGGAAGATCCCGAACTGGG  844

seq1  AAAATGGCGCTGCTTTTATAACCCGCAGCGTGACGTTTCAGCACCTGATA  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCGCTGCTTTTATAACCCGCAGCGTGACGTTTCAGCACCTGATA  894

seq1  TGGCGTGACAGCTCCCGATTCGTTGCTTGCCCATCACCCCACTATTACAC  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTGACAGCTCCCGATTCGTTGCTTGCCCATCACCCCACTATTACAC  944

seq1  CCCGAGAATGGGAGTGACTAGGAGTGAATTC  971
      |||||||||||||||||||||||||||||||
seq2  CCCGAGAATGGGAGTGACTAGGAGTGAATTC  975