BAC Information

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BAC

Clone NameB6Ng01-252E07
Chromosome10 (Build37)
Map Location 10,406,340 - 10,520,306
singlet/doubletdoublet
Overlap geneGrm1
Upstream geneLOC620417, Stxbp5, LOC100039238, LOC665110, 9130014G24Rik, Rab32, EG382450
Downstream geneShprh, Fbxo30, Epm2a, EG666732, LOC100039343
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-252E07.bB6Ng01-252E07.g
ACCGA059309GA059310
length1,1721,137
definitionB6Ng01-252E07.b B6Ng01-252E07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(10,406,340 - 10,407,508)(10,519,555 - 10,520,306)
sequence
gaattctttcacaggtttctcaactggtgggaacccatctttttagcact
gagtcatctttgttgtgtgttttggtttttgaaacagggtatctctattt
aggcttagaatttcttggataaagcaggctggcctcaaacttacaaagct
ccacctgcctctgcctcccaagtgctgggcttaaagacatggacccccat
gtccagctctgtactgttatttcccattctgtttcttcacagtgaaaaca
cagaagctaatgtttaaattcttgaggtctttgcaataaagatgcttaaa
aataactttaaaatagaagccaaaaattcttgcaaaggaattcactaaac
tgggcagtaggatgtggcaacacacaagaaacacaactctgacataggag
ttgatgttaaattctgaacttatgatgctttaggcatttggagattctaa
aatgatgctttttggctgagaaatcagcagcttcgacatgaaggaagcaa
attaaagtgactgaacataaggcataaacaaagatatttaaagggatttg
attcatcccacaaataacagaagaaataaaaataacaggaacaatctttt
tcttttgggttagaaaaggcagggtcaagatggaataactggattacatg
tctgtggctattacatagtagtaaatgtgaggatttaagaaagagacact
aacaaaaatataaaaattaaaatgcatgaaaataaaaaattaagcatgat
tgacaagcagatagttgagacactctgggtggacttgagtgttattacat
actagaagaccgtgaaactcaagtatctgtggaaaaactttttaaaaata
tatctgaagtattctaaatattgcccttttcaaccttacattttaataac
aatgtgtgcaagttataaaaaatggaccctttactgtcacccactgcttg
gtgatctttttaaacaatgccctttcaacttcttcattaataacattctc
gtttcataaatatctgaaaaaataattttcacttaggagatttccatcga
gctgcatgtgagaaacattcagaccacagattcgacctcagaagagacac
tgggtaccttcactggtacataaaaacatttaatcctatattctgaagaa
cgatttctaagtggcagctaga

gaattcaacctacctagtcacacagggagctcattgaagagactagaata
aaccatgttggtatctcagccatctacccggaatctacaagcacaagaag
aaatgttgaagaatatgctatggaatgagacccttttcctgaactcatat
cgaacctctcaagttcttacggagacgtggcagtcatgaaacactttcag
ctttgcatatagagagagtttcagatggagcaaaagtgtcacttacaaaa
ctaagcaagctggaatgacatggaccaacgagaaaagtacccttttgtag
acatatactaccctacatccaagaggacctatggctcacagggccaatcc
taaaacccagaggcagagtccacaatggaaggatcactcccaggccgtgg
attctcctatttggctattttcatccttcccttggccacaattggcatgc
atgcttttcttcagtgttctctttctgtataacgggacatctgcgtaacc
tcattcatgtcccaatatttattttggaccagagaatctgtcatctaatt
ttacaggttcccagatgcagaaccatttgtggtcaaactcatatatgatt
cccatgatcaaggtgatgagacccaaggaaaaagagctgacagaacttcg
aggagattttacactctgaatttttgtgttgctagttgtaaatgtttgaa
aatgttgagatggaattaatttttcataggggatcaatgtgaaccaaaag
tcagactgaactgggcaggctaagatccccaaagatagctatggcctagc
tacccaaacctgtgaatgagttgtattacacaacaaaaggcattacacgt
ggagttaaggttattaattatctgcatttaagatgagccttttccttaag
taacctgatttttatgttaaaggtatgtgagctgggttatttttgtttag
ggttctcaggtatactcttacctattgttcctccttttcatgctttctgg
aaatagtttcttaggtgtatacagcctcgttttggttcttccttggagta
catttagtattataattttactacatgaataactgcaggtgagcagcact
attcatggaaatgctgtcttttttccactgcatagtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_10406340_10407508
seq2: B6Ng01-252E07.b_47_1218

seq1  GAATTCTTTCACAGGTTTCTCAACTGGTGGGAACCCATCTTTTTAGCACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCACAGGTTTCTCAACTGGTGGGAACCCATCTTTTTAGCACT  50

seq1  GAGTCATCTTTGTTGTGTGTTTTGGTTTTTGAAACAGGGTATCTCTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATCTTTGTTGTGTGTTTTGGTTTTTGAAACAGGGTATCTCTATTT  100

seq1  AGGCTTAGAATTTCTTGGATAAAGCAGGCTGGCCTCAAACTTACAAAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTAGAATTTCTTGGATAAAGCAGGCTGGCCTCAAACTTACAAAGCT  150

seq1  CCACCTGCCTCTGCCTCCCAAGTGCTGGGCTTAAAGACATGGACCCCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCCTCTGCCTCCCAAGTGCTGGGCTTAAAGACATGGACCCCCAT  200

seq1  GTCCAGCTCTGTACTGTTATTTCCCATTCTGTTTCTTCACAGTGAAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGCTCTGTACTGTTATTTCCCATTCTGTTTCTTCACAGTGAAAACA  250

seq1  CAGAAGCTAATGTTTAAATTCTTGAGGTCTTTGCAATAAAGATGCTTAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGCTAATGTTTAAATTCTTGAGGTCTTTGCAATAAAGATGCTTAAA  300

seq1  AATAACTTTAAAATAGAAGCCAAAAATTCTTGCAAAGGAATTCACTAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACTTTAAAATAGAAGCCAAAAATTCTTGCAAAGGAATTCACTAAAC  350

seq1  TGGGCAGTAGGATGTGGCAACACACAAGAAACACAACTCTGACATAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCAGTAGGATGTGGCAACACACAAGAAACACAACTCTGACATAGGAG  400

seq1  TTGATGTTAAATTCTGAACTTATGATGCTTTAGGCATTTGGAGATTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTTAAATTCTGAACTTATGATGCTTTAGGCATTTGGAGATTCTAA  450

seq1  AATGATGCTTTTTGGCTGAGAAATCAGCAGCTTCGACATGAAGGAAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGCTTTTTGGCTGAGAAATCAGCAGCTTCGACATGAAGGAAGCAA  500

seq1  ATTAAAGTGACTGAACATAAGGCATAAACAAAGATATTTAAAGGGATTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGTGACTGAACATAAGGCATAAACAAAGATATTTAAAGGGATTTG  550

seq1  ATTCATCCCACAAATAACAGAAGAAATAAAAATAACAGGAACAATCTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCCCACAAATAACAGAAGAAATAAAAATAACAGGAACAATCTTTT  600

seq1  TCTTTTGGGTTAGAAAAGGCAGGGTCAAGATGGAATAACTGGATTACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTGGGTTAGAAAAGGCAGGGTCAAGATGGAATAACTGGATTACATG  650

seq1  TCTGTGGCTATTACATAGTAGTAAATGTGAGGATTTAAGAAAGAGACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGGCTATTACATAGTAGTAAATGTGAGGATTTAAGAAAGAGACACT  700

seq1  AACAAAAATATAAAAATTAAAATGCATGAAAATAAAAAATTAAGCATGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAATATAAAAATTAAAATGCATGAAAATAAAAAATTAAGCATGAT  750

seq1  TGACAAGCAGATAGTTGAGACACTCTGGGTGGACTTGAGTGTTATTACAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAGCAGATAGTTGAGACACTCTGGGTGGACTTGAGTGTTATTACAT  800

seq1  ACTAGAAGACCGTGAAACTCAAGTATCTGTGGAAAAACTTTTTAAAAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAAGACCGTGAAACTCAAGTATCTGTGGAAAAACTTTTTAAAAATA  850

seq1  TATCTGAAGTATTCTAAATATTGCCC-TTTCAACCTTACATTTTAATAAC  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATCTGAAGTATTCTAAATATTGCCCTTTTCAACCTTACATTTTAATAAC  900

seq1  AATGTGTGCAAGTTATAAAAAATGGACCCTTTACTGTCACCCACTGCTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGCAAGTTATAAAAAATGGACCCTTTACTGTCACCCACTGCTTG  950

seq1  GTGATCTTTTTAAACAATGCCCTTTCAAACTTCTTCATTAATAACATTCT  999
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GTGATCTTTTTAAACAATGCCCTTTC-AACTTCTTCATTAATAACATTCT  999

seq1  CGTTTCATAAAATATCTG-AAAAATAATTTTCACTTAGAAGATTTCCCAT  1048
      |||||||| ||||||||| ||||||||||||||||||| |||||| ||||
seq2  CGTTTCAT-AAATATCTGAAAAAATAATTTTCACTTAGGAGATTT-CCAT  1047

seq1  CGAAGCTGCATGTGAGAAACA-TCAGACCACAGATCCAACCTCCAGAGAG  1097
      || |||||||||||||||||| ||||||||||||| | |||||   ||||
seq2  CG-AGCTGCATGTGAGAAACATTCAGACCACAGATTCGACCTCAGAAGAG  1096

seq1  ACACT-GGTACC-TCACTGGTACATAAAAACATTT-ATACTATA-TCTGA  1143
      ||||| |||||| |||||||||||||||||||||| || ||||| |||||
seq2  ACACTGGGTACCTTCACTGGTACATAAAAACATTTAATCCTATATTCTGA  1146

seq1  AAGACGATTTTCTAGTGGCAGCTAGA  1169
      |  |||||||   |||||||||||||
seq2  AGAACGATTTCTAAGTGGCAGCTAGA  1172


seq1: chr10_10519555_10520306
seq2: B6Ng01-252E07.g_456_1203 (reverse)

seq1  AACTATCCAGTGGAAAAAAAGACAGCATTTTCCATGAATAGTGCTGGCTC  50
      |||||| |||||| ||||||||||||| ||||||||||||||||| ||||
seq2  AACTATGCAGTGG-AAAAAAGACAGCA-TTTCCATGAATAGTGCT-GCTC  47

seq1  AACTGGCAGTTA-TCATGTAGTAAAATTAATATACTAAATTGTACTCCAA  99
      | || ||||||| ||||||||||||||||  |||||||| |||||||| |
seq2  ACCT-GCAGTTATTCATGTAGTAAAATTATAATACTAAA-TGTACTCC-A  94

seq1  AGGAAGAACCAAAACGAGGCTGTATACACCTAAGAAACTATTT-CAGAAA  148
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGGAAGAACCAAAACGAGGCTGTATACACCTAAGAAACTATTTCCAGAAA  144

seq1  GCATGAAAAGGAGGAACAATAGGTAAGAGTATACCTGAGAACCCTAAACA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGAAAAGGAGGAACAATAGGTAAGAGTATACCTGAGAACCCTAAACA  194

seq1  AAAATAACCCAGCTCACATACCTTTAACATAAAAATCAGGTTACTTAAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAACCCAGCTCACATACCTTTAACATAAAAATCAGGTTACTTAAGG  244

seq1  AAAAGGCTCATCTTAAATGCAGATAATTAATAACCTTAACTCCACGTGTA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCTCATCTTAAATGCAGATAATTAATAACCTTAACTCCACGTGTA  294

seq1  ATGCCTTTTGTTGTGTAATACAACTCATTCACAGGTTTGGGTAGCTAGGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTTGTTGTGTAATACAACTCATTCACAGGTTTGGGTAGCTAGGC  344

seq1  CATAGCTATCTTTGGGGATCTTAGCCTGCCCAGTTCAGTCTGACTTTTGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCTATCTTTGGGGATCTTAGCCTGCCCAGTTCAGTCTGACTTTTGG  394

seq1  TTCACATTGATCCCCTATGAAAAATTAATTCCATCTCAACATTTTCAAAC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACATTGATCCCCTATGAAAAATTAATTCCATCTCAACATTTTCAAAC  444

seq1  ATTTACAACTAGCAACACAAAAATTCAGAGTGTAAAATCTCCTCGAAGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAACTAGCAACACAAAAATTCAGAGTGTAAAATCTCCTCGAAGTT  494

seq1  CTGTCAGCTCTTTTTCCTTGGGTCTCATCACCTTGATCATGGGAATCATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGCTCTTTTTCCTTGGGTCTCATCACCTTGATCATGGGAATCATA  544

seq1  TATGAGTTTGACCACAAATGGTTCTGCATCTGGGAACCTGTAAAATTAGA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTTTGACCACAAATGGTTCTGCATCTGGGAACCTGTAAAATTAGA  594

seq1  TGACAGATTCTCTGGTCCAAAATAAATATTGGGACATGAATGAGGTTACG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGATTCTCTGGTCCAAAATAAATATTGGGACATGAATGAGGTTACG  644

seq1  CAGATGTCCCGTTATACAGAAAGAGAACACTGAAGAAAAGCATGCATGCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTCCCGTTATACAGAAAGAGAACACTGAAGAAAAGCATGCATGCC  694

seq1  AATTGTGGCCAAGGGAAGGATGAAAATAGCCAAATAGGAGAATCCACGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGGCCAAGGGAAGGATGAAAATAGCCAAATAGGAGAATCCACGGC  744

seq1  CTGG  752
      ||||
seq2  CTGG  748


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