BAC Information

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BAC

Clone NameB6Ng01-254F20
Chromosome10 (Build37)
Map Location 28,085,293 - 28,261,101
singlet/doubletdoublet
Overlap genePtprk
Upstream geneLama2, LOC100040385, LOC100040961, LOC100040401
Downstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik, Echdc1, Rnf146, Rspo3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-254F20.bB6Ng01-254F20.g
ACCGA060848GA060849
length1,2241,177
definitionB6Ng01-254F20.b B6Ng01-254F20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,085,293 - 28,086,509)(28,259,917 - 28,261,101)
sequence
gaattcaatatggatggcagaaatgcaccctgtcagggaagccatatatt
aaagagaatttgaatgggaaaccgaatccccacctgccactgggaacatt
ttgatcattttgatttattaaacttttataacaacattcagatggagctg
aattaaaggctttagtctggaatagattattgtacatcattcgctatgta
accggcatcacttttgaaggttctagcaatctgtggagagagatagaatg
aatggatgagggcttgttttatattattatatttagcctgatgaatattg
ctttaagcttgtctatgattctcttattgataagcaggatttgcaatttc
agaattttaggttactttgaatttttggtgttttttcaagcatatttgaa
atagtgggaaataattttcttgttggagcagcacatatcttacacacagg
catattgggcatctgtttctgggtttggtggataaatattcacgtagaaa
cactaatggtgtgcgggagcctgtcataggaaggtgcattcccatatcac
tattgaaattctgtgcatcaatccttttgaaaatcgtctttcagcatcag
cagccatgagcagtctgttctgaacagtagctccctgataaagagaaatc
aattactattagagaggcactagaggttaaaggcattactggttcacact
tggttttgcagccataagcggatacttagctgtgaatcagggatgatgca
gaagatggatgagacagagttcaaggagcagtaatgtgagggtccaggac
tatcattccaacctgtctctgcgctcatgatggatggtttggtggcaaga
agtaataataccaaatgatgaaagatacatctcaggaacttgagcccagc
agactgtacctattggaattctgggtcataatgattcctgatttgcaacc
aaacaggtttggctgcatttacagcacaggtttcttgacagctgtgaagg
agcaagctgcatgtcaagcactcccgcctcactgtaaatttaattacctc
atattttttgcattagtagattgttggacagacttgtagctatgctaata
tggtagttaagttgtacctgcagaaatcaacttttccattgttgtcttta
tgaatcattatcatgaacatgaataaatgaatctagttcgtgaagtataa
atgcaaatgaaatgataaattgga

gaattcaggtatatgtggtgaacactttactgactttgccaccttcttgg
ccctggcactaatagataattcagcagaggccactcagtgaccatgtcat
ttctgcataggagggaagacgggtcagaagaaggtgatatggggttagat
gatggagcctcctctttgtgtctctgctttgttgcatgtgtgcatttggc
attgaaggaagcttagagcattggagtcacttacttgacaaaaactgatc
ttcttacctcaagtaacaaaacaaatgagacaataacaattctgctttca
cgctttggggatgccaaatactatagttctgtactgttggagggctaatg
aacgaggctatatttatagtaaagagagcatgggcaaggaatatgtcagt
aataagggcttacaccttctaaacacttatcctagtgttgagacatggaa
gtaggcgatgcctctcgagcagggtggctgatgatcactgggaaacaaga
gagggaagtgaaagtaaaatgctgggctatatcctatccacacagaacat
ttacagtgaagaaggccacaaacaactaaatataactttcaagtgaacgt
ttgtaaagtgataaacatgggtagcaggagacactagggaaaaacagctc
tgataatgtcactggtattttttttcccctcccacaaatggcaggatcag
aaaagtctcttcctcagggaaaactctggaatattaaaatgtaggcactg
catgtaattaaaaggcaaatgcacttgacatttttgttggcacaaactca
gaataccagaactgggccagtcatctaaacatgccattcaaagcctagaa
aggaaaattaaaacaacaacaaaaatttaatttgaatattattaggaaac
aaatagaagtcaaggaaactctttaacaatcttcaaaaataagggttgaa
atattgatctaaaatataagtagacctaccccttgacctattttctactg
cttctacttgttagctaaggatatgagtggcttgcctatttggctccttt
aggtaatgaatttattttccatttgacaggttcaatttccaccaaagctt
agaattatccataatctggacatatctcaggaaaccctacatgttcaatc
acattaatagagtgcacactgcaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_28085293_28086509
seq2: B6Ng01-254F20.b_46_1269

seq1  GAATTCAATATGGATGGCAGAAATGCACCCTGTCAGGGAAGCCATATATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATATGGATGGCAGAAATGCACCCTGTCAGGGAAGCCATATATT  50

seq1  AAAGAGAATTTGAATGGGAAACCGAATCCCCACCTGCCACTGGGAACATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAATTTGAATGGGAAACCGAATCCCCACCTGCCACTGGGAACATT  100

seq1  TTGATCATTTTGATTTATTAAACTTTTATAACAACATTCAGATGGAGCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCATTTTGATTTATTAAACTTTTATAACAACATTCAGATGGAGCTG  150

seq1  AATTAAAGGCTTTAGTCTGGAATAGATTATTGTACATCATTCGCTATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAGGCTTTAGTCTGGAATAGATTATTGTACATCATTCGCTATGTA  200

seq1  ACCGGCATCACTTTTGAAGGTTCTAGCAATCTGTGGAGAGAGATAGAATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGCATCACTTTTGAAGGTTCTAGCAATCTGTGGAGAGAGATAGAATG  250

seq1  AATGGATGAGGGCTTGTTTTATATTATTATATTTAGCCTGATGAATATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGATGAGGGCTTGTTTTATATTATTATATTTAGCCTGATGAATATTG  300

seq1  CTTTAAGCTTGTCTATGATTCTCTTATTGATAAGCAGGATTTGCAATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGCTTGTCTATGATTCTCTTATTGATAAGCAGGATTTGCAATTTC  350

seq1  AGAATTTTAGGTTACTTTGAATTTTTGGTGTTTTTTCAAGCATATTTGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTAGGTTACTTTGAATTTTTGGTGTTTTTTCAAGCATATTTGAA  400

seq1  ATAGTGGGAAATAATTTTCTTGTTGGAGCAGCACATATCTTACACACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGGGAAATAATTTTCTTGTTGGAGCAGCACATATCTTACACACAGG  450

seq1  CATATTGGGCATCTGTTTCTGGGTTTGGTGGATAAATATTCACGTAGAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGGGCATCTGTTTCTGGGTTTGGTGGATAAATATTCACGTAGAAA  500

seq1  CACTAATGGTGTGCGGGAGCCTGTCATAGGAAGGTGCATTCCCATATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATGGTGTGCGGGAGCCTGTCATAGGAAGGTGCATTCCCATATCAC  550

seq1  TATTGAAATTCTGTGCATCAATCCTTTTGAAAATCGTCTTTCAGCATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGAAATTCTGTGCATCAATCCTTTTGAAAATCGTCTTTCAGCATCAG  600

seq1  CAGCCATGAGCAGTCTGTTCTGAACAGTAGCTCCCTGATAAAGAGAAATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATGAGCAGTCTGTTCTGAACAGTAGCTCCCTGATAAAGAGAAATC  650

seq1  AATTACTATTAGAGAGGCACTAGAGGTTAAAGGCATTACTGGTTCACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACTATTAGAGAGGCACTAGAGGTTAAAGGCATTACTGGTTCACACT  700

seq1  TGGTTTTGCAGCCATAAGCGGATACTTAGCTGTGAATCAGGGATGATGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTGCAGCCATAAGCGGATACTTAGCTGTGAATCAGGGATGATGCA  750

seq1  GAAGATGGATGAGACAGAGTTCAAGGAGCAGTAATGTGAGGGTCCAGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGGATGAGACAGAGTTCAAGGAGCAGTAATGTGAGGGTCCAGGAC  800

seq1  TATCATTCCAACCTGTCTCTGCGCTCATGATGGATGGTTTGGTGGCAAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATTCCAACCTGTCTCTGCGCTCATGATGGATGGTTTGGTGGCAAGA  850

seq1  AGTAATAATACCAAATGATGAAAGATACATCTCAGGAACTTGAGCCCAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATAATACCAAATGATGAAAGATACATCTCAGGAACTTGAGCCCAGC  900

seq1  AGACTGTACCTATTGGAATTCTGGGTCATAATGATTCCTGATTTGCAACC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTACCTATTGGAATTCTGGGTCATAATGATTCCTGATTTGCAACC  950

seq1  AAACAGG-TTGGCTGCATTTAACAGCACAGGTTTC-TGACAGCTGTGAAG  998
      ||||||| |||||||||||| |||||||||||||| ||||||||||||||
seq2  AAACAGGTTTGGCTGCATTT-ACAGCACAGGTTTCTTGACAGCTGTGAAG  999

seq1  GAGGCAAGCTGCATGTCAAGCACTCCCG-CTCACTGTAAATTTAATTACC  1047
      || ||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GA-GCAAGCTGCATGTCAAGCACTCCCGCCTCACTGTAAATTTAATTACC  1048

seq1  TCATA-TTTTTGCA-TAGTAGA-TGTT-GACAGGAACTTGTAAGCTATGC  1093
      ||||| |||||||| ||||||| |||| |||||  |||||| ||||||||
seq2  TCATATTTTTTGCATTAGTAGATTGTTGGACAG--ACTTGT-AGCTATGC  1095

seq1  TAATATGGTAGGTAATTTGTTACCTGCAGAAATC-ACTTTTCCAT--GTG  1140
      ||||||||||| ||| ||| |||||||||||||| ||||||||||   ||
seq2  TAATATGGTAGTTAAGTTG-TACCTGCAGAAATCAACTTTTCCATTGTTG  1144

seq1  TC-TTATG-ATCATTATCATGAAACATG-ATAAATG-ATCTAGTCCGTGA  1186
      || ||||| |||||||||||| |||||| ||||||| ||||||| |||||
seq2  TCTTTATGAATCATTATCATG-AACATGAATAAATGAATCTAGTTCGTGA  1193

seq1  GGTATAAATGAAAATGAAATGGATAATTGGA  1217
       ||||||||| ||||||||||   |||||||
seq2  AGTATAAATGCAAATGAAATGATAAATTGGA  1224


seq1: chr10_28259917_28261101
seq2: B6Ng01-254F20.g_70_1246 (reverse)

seq1  AAATTGCAGTGCAACCTCTATTAATGTGATTTAAACCCTGTTGTGTGTTC  50
      |||||||||||    |||||||||||||||| ||  | ||| |   | | 
seq2  AAATTGCAGTGTGCACTCTATTAATGTGATTGAA--CATGTAG---GGTT  45

seq1  TCCTGAGATATG-CCAGATTAATGAATTA-TCTAAGCCTTGGTGGAAAAT  98
      |||||||||||| ||||||| ||| || | ||||||| |||||||||| |
seq2  TCCTGAGATATGTCCAGATT-ATGGATAATTCTAAGCTTTGGTGGAAATT  94

seq1  G-ACCTGTTCAAAATGAAAATAAAATTCATAACTAAAAGGAGCCAAAATA  147
      | ||||| |||||  |||||| |||||||| ||  ||||||||||||   
seq2  GAACCTG-TCAAATGGAAAAT-AAATTCATTACCTAAAGGAGCCAAATAG  142

seq1  GCAAG-CACTCATAATCCTTTAGCTAACAAGTAAGAGCAGTAG-AAATAG  195
      ||||| ||||||| |||| ||||||||||||||  |||||||| ||||||
seq2  GCAAGCCACTCAT-ATCC-TTAGCTAACAAGTAGAAGCAGTAGAAAATAG  190

seq1  GTCAAAGGGTAGGTCCTACTTATTATTTTAGATC-ATATTTC-ACCCTTA  243
      ||||| |||||||| ||||||| ||||||||||| ||||||| |||||||
seq2  GTCAAGGGGTAGGT-CTACTTA-TATTTTAGATCAATATTTCAACCCTTA  238

seq1  TTTTTGAAGATTGTTAAAGAGTTTCCTTGACTTCTATTTGTTTTCCTAAT  293
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TTTTTGAAGATTGTTAAAGAGTTTCCTTGACTTCTATTTG-TTTCCTAAT  287

seq1  AATATTCAAATTAAATTTTTTTGTTGTTGTTTTAATTTTCCTTCTTAGGC  343
      |||||||||||||||  ||||||||||||||||||||||||||  |||||
seq2  AATATTCAAATTAAA--TTTTTGTTGTTGTTTTAATTTTCCTTTCTAGGC  335

seq1  TTTGAATGGCATGTTTAGATGACTGGCCCAGTTCTGGTATTCTGAGTTTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATGGCATGTTTAGATGACTGGCCCAGTTCTGGTATTCTGAGTTTG  385

seq1  TGCCAACAAAAATGTCAAGTGCATTTGCCTTTTAATTACATGCAGTGCCT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAACAAAAATGTCAAGTGCATTTGCCTTTTAATTACATGCAGTGCCT  435

seq1  ACATTTTAATATTCCAGAGTTTTCCCTGAGGAAGAGACTTTTCTGATCCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTAATATTCCAGAGTTTTCCCTGAGGAAGAGACTTTTCTGATCCT  485

seq1  GCCATTTGTGGGAGGGGAAAAAAAATACCAGTGACATTATCAGAGCTGTT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTGTGGGAGGGGAAAAAAAATACCAGTGACATTATCAGAGCTGTT  535

seq1  TTTCCCTAGTGTCTCCTGCTACCCATGTTTATCACTTTACAAACGTTCAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTAGTGTCTCCTGCTACCCATGTTTATCACTTTACAAACGTTCAC  585

seq1  TTGAAAGTTATATTTAGTTGTTTGTGGCCTTCTTCACTGTAAATGTTCTG  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTTATATTTAGTTGTTTGTGGCCTTCTTCACTGTAAATGTTCTG  635

seq1  TGTGGATAGGATATAGCCCAGCATTTTACTTTCACTTCCCTCTCTTGTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATAGGATATAGCCCAGCATTTTACTTTCACTTCCCTCTCTTGTTT  685

seq1  CCCAGTGATCATCAGCCACCCTGCTCGAGAGGCATCGCCTACTTCCATGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGATCATCAGCCACCCTGCTCGAGAGGCATCGCCTACTTCCATGT  735

seq1  CTCAACACTAGGATAAGTGTTTAGAAGGTGTAAGCCCTTATTACTGACAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACACTAGGATAAGTGTTTAGAAGGTGTAAGCCCTTATTACTGACAT  785

seq1  ATTCCTTGCCCATGCTCTCTTTACTATAAATATAGCCTCGTTCATTAGCC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTGCCCATGCTCTCTTTACTATAAATATAGCCTCGTTCATTAGCC  835

seq1  CTCCAACAGTACAGAACTATAGTATTTGGCATCCCCAAAGCGTGAAAGCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAACAGTACAGAACTATAGTATTTGGCATCCCCAAAGCGTGAAAGCA  885

seq1  GAATTGTTATTGTCTCATTTGTTTTGTTACTTGAGGTAAGAAGATCAGTT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGTTATTGTCTCATTTGTTTTGTTACTTGAGGTAAGAAGATCAGTT  935

seq1  TTTGTCAAGTAAGTGACTCCAATGCTCTAAGCTTCCTTCAATGCCAAATG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCAAGTAAGTGACTCCAATGCTCTAAGCTTCCTTCAATGCCAAATG  985

seq1  CACACATGCAACAAAGCAGAGACACAAAGAGGAGGCTCCATCATCTAACC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATGCAACAAAGCAGAGACACAAAGAGGAGGCTCCATCATCTAACC  1035

seq1  CCATATCACCTTCTTCTGACCCGTCTTCCCTCCTATGCAGAAATGACATG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCACCTTCTTCTGACCCGTCTTCCCTCCTATGCAGAAATGACATG  1085

seq1  GTCACTGAGTGGCCTCTGCTGAATTATCTATTAGTGCCAGGGCCAAGAAG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACTGAGTGGCCTCTGCTGAATTATCTATTAGTGCCAGGGCCAAGAAG  1135

seq1  GTGGCAAAGTCAGTAAAGTGTTCACCACATATACCTGAATTC  1185
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCAAAGTCAGTAAAGTGTTCACCACATATACCTGAATTC  1177


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