BAC Information

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BAC

Clone NameB6Ng01-257E07
Chromosome10 (Build37)
Map Location 61,685,240 - 61,867,312
singlet/doubletdoublet
Overlap geneTspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1
Upstream geneAdamts14, Prf1, EG237361, X99384, Nodal, Eif4ebp2, D830039M14Rik, Lrrc20, Npffr1, Ppa1, Sar1a, Tysnd1, Aifm2, H2afy2, LOC100039284, Col13a1, EG436164, EG432466, 2010107G23Rik, Neurog3
Downstream geneSupv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7, Mypn, 1700120B22Rik, Herc4, Sirt1, Dnajc12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-257E07.bB6Ng01-257E07.g
ACCGA063012GA063013
length1,140209
definitionB6Ng01-257E07.b B6Ng01-257E07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,866,172 - 61,867,312)(61,685,240 - 61,685,448)
sequence
gaattcaggtcctttggaagagcaataaatgctcttaacggctgagccat
ctctccagccccaatggtctaagagtcattttggatttggttttggtttt
ggttttttattgcaatgtgtaagtctgtttagaacagatagttctggaaa
ttgtatcttccgatatttgaagactaaaaattatattattgttcagccta
ggaaacaattagtctggtgtagaggctcagaggtgagggccatctcctgg
ggtcttccatccgtgtcatggtgggccttctctggggtctccgagcttca
tgtcagccctccattactataacagatgcctgagctagtgggcttgaggg
tttacctggctcacatttgggaagttcctcgcctacatactccaagagga
aaagcatgacatttggttcacagccttatgaccaactggcttcatggctt
ttgggcctgtggccatgtaacatgttatggtggatgtatgtggcagagga
aaatcatttacctcatggttgggtgtggcatagagagagggctggggtcc
cacttccctcttcatgaatatgtccctaatggtgggtaggcttttacggg
gcctacctcctaaaggtgccaccacctcccaaatataggccaagaagcag
gcctttgacaaaggccttcagtggacactccagactgaaaacttagaatc
aagttctctgagacagaacctcaatgtggaggttagaagcacccaggtct
ttgctctggtgtcacatggtggtcgagggagcttagaaaatacaaatccg
aaacactgtgtttcctcatgacagaagtaggaatggctcctccgcccaat
ggcgtttggtagctcatgctgcttagcctcgggtgtcgcttacaccgacc
cgttcatcccatcacaggttcgagaagatgatcagcggctgtacatgggg
gagctggtcaggctatctgctgaagatggccaaagttggtctcctgtttg
ggggtgcaaatcctctgctcctccatacaaagggcagatcgaaacacaga
cacgttgctgcaatggaggaatgtaagctgctgggtgtccgtcctggcct
catgtggagggctgggttgttccctccttctctgactctg
caggccagcctgggctccatggtgacttcctggctagcctgggctaggca
ttctgcaacaacaatgcaacaagcaatgacaatctgcagaaaccactttg
ctttccatctgctatcacctaccaggacataggtggaggaggatgactcc
tccgagagtggtcacctcccactctaaccctggaggtgtgagctacgggg
ggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_61866172_61867312
seq2: B6Ng01-257E07.b_50_1189 (reverse)

seq1  CAGAGTCA-AGAAGGAGGG-ACAACCCAGCCCTCCACA-GAGGCAAGAGG  47
      |||||||| |||||||||| |||||||||||||||||| |||||   |||
seq2  CAGAGTCAGAGAAGGAGGGAACAACCCAGCCCTCCACATGAGGC--CAGG  48

seq1  ACGGACACCCCAGCAGCTTACAT--CTCCATGGCAGCCACGTG-CTGTGT  94
      ||||||| |||||||||||||||  |||||| ||||| ||||| ||||||
seq2  ACGGACA-CCCAGCAGCTTACATTCCTCCATTGCAGCAACGTGTCTGTGT  97

seq1  TTCGATCTTGCCCTTTGTATGGA-GAGCAGAGGATTTTGCACCCCCAAAC  143
      ||||||| ||||||||||||||| |||||||||| |||||||||||||||
seq2  TTCGATC-TGCCCTTTGTATGGAGGAGCAGAGGA-TTTGCACCCCCAAAC  145

seq1  AGGAGACCAACTTTGGCCATCTTCAGCAAGATAAGCCTGACCAGCTCCCC  193
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  AGGAGACCAACTTTGGCCATCTTCAGC-AGAT-AGCCTGACCAGCTCCCC  193

seq1  CATGTACAGCCCGCTGATCATCTTCTCGAACCTGTGATGGGATGAACGGG  243
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  CATGTACAG-CCGCTGATCATCTTCTCGAACCTGTGATGGGATGAACGGG  242

seq1  TCGGTGTAAGCGACACCCGAGGCTAAGCAGCATGAGCTACCAAACGCCAT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGTGTAAGCGACACCCGAGGCTAAGCAGCATGAGCTACCAAACGCCAT  292

seq1  TGGGCGGAGGAGCCATTCCTACTTCTGTCATGAGGAAACACAGTGTTTCG  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGGAGGAGCCATTCCTACTTCTGTCATGAGGAAACACAGTGTTTCG  342

seq1  GATTTGTATTTTCTAAGCTCCCTCGACCACCATGTGACACCAGAGCAAAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGTATTTTCTAAGCTCCCTCGACCACCATGTGACACCAGAGCAAAG  392

seq1  ACCTGGGTGCTTCTAACCTCCACATTGAGGTTCTGTCTCAGAGAACTTGA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGTGCTTCTAACCTCCACATTGAGGTTCTGTCTCAGAGAACTTGA  442

seq1  TTCTAAGTTTTCAGTCTGGAGTGTCCACTGAAGGCCTTTGTCAAAGGCCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAGTTTTCAGTCTGGAGTGTCCACTGAAGGCCTTTGTCAAAGGCCT  492

seq1  GCTTCTTGGCCTATATTTGGGAGGTGGTGGCACCTTTAGGAGGTAGGCCC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTGGCCTATATTTGGGAGGTGGTGGCACCTTTAGGAGGTAGGCCC  542

seq1  CGTAAAAGCCTACCCACCATTAGGGACATATTCATGAAGAGGGAAGTGGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAAAAGCCTACCCACCATTAGGGACATATTCATGAAGAGGGAAGTGGG  592

seq1  ACCCCAGCCCTCTCTCTATGCCACACCCAACCATGAGGTAAATGATTTTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCAGCCCTCTCTCTATGCCACACCCAACCATGAGGTAAATGATTTTC  642

seq1  CTCTGCCACATACATCCACCATAACATGTTACATGGCCACAGGCCCAAAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCCACATACATCCACCATAACATGTTACATGGCCACAGGCCCAAAA  692

seq1  GCCATGAAGCCAGTTGGTCATAAGGCTGTGAACCAAATGTCATGCTTTTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAAGCCAGTTGGTCATAAGGCTGTGAACCAAATGTCATGCTTTTC  742

seq1  CTCTTGGAGTATGTAGGCGAGGAACTTCCCAAATGTGAGCCAGGTAAACC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGGAGTATGTAGGCGAGGAACTTCCCAAATGTGAGCCAGGTAAACC  792

seq1  CTCAAGCCCACTAGCTCAGGCATCTGTTATAGTAATGGAGGGCTGACATG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGCCCACTAGCTCAGGCATCTGTTATAGTAATGGAGGGCTGACATG  842

seq1  AAGCTCGGAGACCCCAGAGAAGGCCCACCATGACACGGATGGAAGACCCC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCGGAGACCCCAGAGAAGGCCCACCATGACACGGATGGAAGACCCC  892

seq1  AGGAGATGGCCCTCACCTCTGAGCCTCTACACCAGACTAATTGTTTCCTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGATGGCCCTCACCTCTGAGCCTCTACACCAGACTAATTGTTTCCTA  942

seq1  GGCTGAACAATAATATAATTTTTAGTCTTCAAATATCGGAAGATACAATT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAACAATAATATAATTTTTAGTCTTCAAATATCGGAAGATACAATT  992

seq1  TCCAGAACTATCTGTTCTAAACAGACTTACACATTGCAATAAAAAACCAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGAACTATCTGTTCTAAACAGACTTACACATTGCAATAAAAAACCAA  1042

seq1  AACCAAAACCAAATCCAAAATGACTCTTAGACCATTGGGGCTGGAGAGAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAAACCAAATCCAAAATGACTCTTAGACCATTGGGGCTGGAGAGAT  1092

seq1  GGCTCAGCCGTTAAGAGCATTTATTGCTCTTCCAAAGGACCTGAATTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGCCGTTAAGAGCATTTATTGCTCTTCCAAAGGACCTGAATTC  1140

seq1: chr10_61685240_61685448
seq2: B6Ng01-257E07.g_72_280

seq1  CAGGCCAGCCTGGGCTCCATGGTGACTTCCTGGCTAGCCTGGGCTAGGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGCCTGGGCTCCATGGTGACTTCCTGGCTAGCCTGGGCTAGGCA  50

seq1  TTCTGCAACAACAATGCAACAAGCAATGACAATCTGCAGAAACCACTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAACAACAATGCAACAAGCAATGACAATCTGCAGAAACCACTTTG  100

seq1  CTTTCCATCTGCTATCACCTACCAGGACATAGGTGGAGGAGGATGACTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATCTGCTATCACCTACCAGGACATAGGTGGAGGAGGATGACTCC  150

seq1  TCCGAGAGTGGTCACCTCCCACTCTAACCCTGGAGGTGTGAGCTACGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGAGTGGTCACCTCCCACTCTAACCCTGGAGGTGTGAGCTACGGGG  200

seq1  GGGGGGGGG  209
      |||||||||
seq2  GGGGGGGGG  209