BAC Information

Click to search

BAC

Clone NameB6Ng01-259B14
Chromosome10 (Build37)
Map Location 79,758,278 - 79,892,833
singlet/doubletdoublet
Overlap geneApc2, 2310011J03Rik, Pcsk4, Reep6, Adamtsl5, 6330514A18Rik, Rkhd1, Mbd3, Uqcr, Tcfe2a
Upstream geneLOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2, Stk11, Dos, Atp5d, Midn, Cirbp, 1600002K03Rik, Efna2, Mum1, Ndufs7, Gamt, Dazap1, Rps15
Downstream geneOnecut3, Atp8b3, Rexo1, Klf16, D10Bwg1364e, Scamp4, Csnk1g2, Btbd2, Mknk2, Mobkl2a, 9030607L17Rik, Ap3d1, Dot1l, Plekhj1, Sf3a2, Amh, Jsrp1, Oaz1, BC072620, Lsm7, 3110056O03Rik, Tmprss9, Timm13, Lmnb2, Gadd45b, Gng7, LOC100042403, Diras1, Slc39a3, Sgta, Thop1, Creb3l3, Map2k2, Zbtb7a, Pias4, Eef2, Dapk3, Itgb1bp3, Atcay, 9130206N08Rik, Matk, Mrpl54, Apba3, Tjp3, Pip5k1c, 2510012J08Rik, Tbxa2r, Gipc3, Hmg20b, F630110N24Rik, 4930404N11Rik, Fzr1, Dohh, 2210404O07Rik, Nfic
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259B14.bB6Ng01-259B14.g
ACCGA064372GA064373
length1,075849
definitionB6Ng01-259B14.b B6Ng01-259B14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,891,767 - 79,892,833)(79,758,278 - 79,759,127)
sequence
gaattctaccaaataacaagcatgctcacactgaaacggccccagccacc
ctacggaaatgcagccctagggacagagccactgggttccggaaggcccc
gctggtatttttaaggcccattttctgtcgttgcctcctggtttgcccca
ggctgaacagacagaggccctggcccctggtttttgttgttgttaaactg
tcaggtcacggcctagtggcctggaacacagcagcttgggggtgcagctc
agcccagtggacccaggggagcaccctgagcctcagggccacccccttca
gtcgcagggctcaggatctcccccgatttaggtcaagagagggcgtcctg
tgggatagatgagaaactggggtgaaagcacgggggacgggggcgaggat
ggcagggcctgtggtgggggtcgtagtttttattcttttgattgtgagct
agcatctcctggagcccaggttggtctagataccctaaatcctcctgtct
gcaagtatggagaagcctgtgcccccttggctagaatttgttctttttct
ttcagttatttaagtgtgtgtgagtgcgagcgagcaagagagcgagagca
tgcacttgagagaaagcacctgtgcaccttgtttatgcagggtaccctgg
aggtcagaagagggcattagccaccctgcagctccagtttcagatagttg
tgagcagtcatgtggttgctgggaacttcatcccggtcctctggaagagc
atgttatcctcagagctcgctctctggtccccatcttagcatttgagaca
gagcctccctctgcaaccccatgctggtcccagacagggccccacttcgg
ccactgctcctcctgaatgagaggtagggatggtgaccccccccacccgc
tggctgtggggctacactgtcacctgcctagttgtctgtgggatgacttt
aggggacagtgtgggcagctttggggcccttccttgtcccttcagttgct
taggcttccaccacacaggtaaatatggccccttcggtgttgggagtggg
ctgtgtgtaaggtttgatctgtctg
gaattccagtaatgttcacatgacagcgtccacatccagcggatcccctc
catgccctgtgcccggctctaaggctggcacccagaacatttttcttgaa
tgacttgtgaatcttagcgggtatctgggcacgcaggtgactgactatcc
acaggcagatgcatggtgtcatagccacagggtggcgcttctagctccca
caaacacggactctgcatgggtctcctcctcttcaacggaccggttccaa
cacttagggtgctccaggcctgttagatatatgctttgtcgctctaccca
aagagatcctgtcttacttatattttcatctccagagtcttgggtcaccc
ctcatcagtgtagtgacaccccctcccgccccttgttttgcgcaggcgca
atactcccgccccttccatccctgctgtggagggcggggcgcgtgctgtc
cgggcggctgcagcttcatggggctcttgggactcctgagcctgctgcac
tcagccttctttgggaaccaggtaggatgcagggagtcctggtcggagat
gagggtgtggggagagtcaggtgaggtcctgactgtgggaatggcggccc
cgaggacagtagaggacactcaactgtcaagctagccaacttgatgggtc
ggggggccttccgtagttgctctggagacagttgccaaggaaacctcctg
agcatgtgcatggggctgagttcccctccctgtactgcagcgacccctcc
cccgtcccgcgcagcgcaggtttaccttgagggagactccttcagcagga
aacctcatttcttttcctttcctttcctttcctttcctttcctttcctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_79891767_79892833
seq2: B6Ng01-259B14.b_44_1118 (reverse)

seq1  CAGACAGA-CAAACCATACACACCAGCCAACTCCCAACCACCGA--GGGC  47
      |||||||| |||||| |||||| ||||| |||||||| ||||||  ||||
seq2  CAGACAGATCAAACCTTACACA-CAGCCCACTCCCAA-CACCGAAGGGGC  48

seq1  CATATTTTACCTGTGT-GTGG-AGCCTAAGCAACTGAAGGGAC-AGGAAG  94
      |||| ||||||||||| |||| ||||||||||||||||||||| ||||||
seq2  CATA-TTTACCTGTGTGGTGGAAGCCTAAGCAACTGAAGGGACAAGGAAG  97

seq1  G--CCCCAAGCTGCCCACACTGTCCCCT-AAGTCATCCCACAGACAACTA  141
      |  ||| ||||||||||||||||||||| |||||||||||||||||||||
seq2  GGCCCCAAAGCTGCCCACACTGTCCCCTAAAGTCATCCCACAGACAACTA  147

seq1  GGCA-GTGACAGTGTAGCCCCACAGCCAGCGGGT-GGGGGGGTCACCATC  189
      |||| ||||||||||||||||||||||||||||| |||||||||||||||
seq2  GGCAGGTGACAGTGTAGCCCCACAGCCAGCGGGTGGGGGGGGTCACCATC  197

seq1  CCTACCTCTCATTCAGGAGGAGCAGTGGCCGAAGTGGGGCCCTGTCTGGG  239
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTCTCATTCAGGAGGAGCAGTGGCCGAAGTGGGGCCCTGTCTGGG  247

seq1  ACCAGCATGGGGTTGCAGAGGGAGGCTCTGTCTCAAATGCTAAGATGGGG  289
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCATGGGGTTGCAGAGGGAGGCTCTGTCTCAAATGCTAAGATGGGG  297

seq1  ACCAGAGAGCGAGCTCTGAGGATAACATGCTCTTCCAGAGGACCGGGATG  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGAGCGAGCTCTGAGGATAACATGCTCTTCCAGAGGACCGGGATG  347

seq1  AAGTTCCCAGCAACCACATGACTGCTCACAACTATCTGAAACTGGAGCTG  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCCAGCAACCACATGACTGCTCACAACTATCTGAAACTGGAGCTG  397

seq1  CAGGGTGGCTAATGCCCTCTTCTGACCTCCAGGGTACCCTGCATAAACAA  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGGCTAATGCCCTCTTCTGACCTCCAGGGTACCCTGCATAAACAA  447

seq1  GGTGCACAGGTGCTTTCTCTCAAGTGCATGCTCTCGCTCTCTTGCTCGCT  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCACAGGTGCTTTCTCTCAAGTGCATGCTCTCGCTCTCTTGCTCGCT  497

seq1  CGCACTCACACACACTTAAATAACTGAAAGAAAAAGAACAAATTCTAGCC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACTCACACACACTTAAATAACTGAAAGAAAAAGAACAAATTCTAGCC  547

seq1  AAGGGGGCACAGGCTTCTCCATACTTGCAGACAGGAGGATTTAGGGTATC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGCACAGGCTTCTCCATACTTGCAGACAGGAGGATTTAGGGTATC  597

seq1  TAGACCAACCTGGGCTCCAGGAGATGCTAGCTCACAATCAAAAGAATAAA  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAACCTGGGCTCCAGGAGATGCTAGCTCACAATCAAAAGAATAAA  647

seq1  AACTACGACCCCCACCACAGGCCCTGCCATCCTCGCCCCCGTCCCCCGTG  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACGACCCCCACCACAGGCCCTGCCATCCTCGCCCCCGTCCCCCGTG  697

seq1  CTTTCACCCCAGTTTCTCATCTATCCCACAGGACGCCCTCTCTTGACCTA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACCCCAGTTTCTCATCTATCCCACAGGACGCCCTCTCTTGACCTA  747

seq1  AATCGGGGGAGATCCTGAGCCCTGCGACTGAAGGGGGTGGCCCTGAGGCT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCGGGGGAGATCCTGAGCCCTGCGACTGAAGGGGGTGGCCCTGAGGCT  797

seq1  CAGGGTGCTCCCCTGGGTCCACTGGGCTGAGCTGCACCCCCAAGCTGCTG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTGCTCCCCTGGGTCCACTGGGCTGAGCTGCACCCCCAAGCTGCTG  847

seq1  TGTTCCAGGCCACTAGGCCGTGACCTGACAGTTTAACAACAACAAAAACC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAGGCCACTAGGCCGTGACCTGACAGTTTAACAACAACAAAAACC  897

seq1  AGGGGCCAGGGCCTCTGTCTGTTCAGCCTGGGGCAAACCAGGAGGCAACG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGCCAGGGCCTCTGTCTGTTCAGCCTGGGGCAAACCAGGAGGCAACG  947

seq1  ACAGAAAATGGGCCTTAAAAATACCAGCGGGGCCTTCCGGAACCCAGTGG  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAATGGGCCTTAAAAATACCAGCGGGGCCTTCCGGAACCCAGTGG  997

seq1  CTCTGTCCCTAGGGCTGCATTTCCGTAGGGTGGCTGGGGCCGTTTCAGTG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTCCCTAGGGCTGCATTTCCGTAGGGTGGCTGGGGCCGTTTCAGTG  1047

seq1  TGAGCATGCTTGTTATTTGGTAGAATTC  1067
      ||||||||||||||||||||||||||||
seq2  TGAGCATGCTTGTTATTTGGTAGAATTC  1075

seq1: chr10_79758278_79759127
seq2: B6Ng01-259B14.g_71_919

seq1  GAATTCCAGTAATGTTCACATGACAGCGTCCACATCCAGCGGATCCCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTAATGTTCACATGACAGCGTCCACATCCAGCGGATCCCCTC  50

seq1  CATGCCCTGTGCCCGGCTCTAAGGCTGGCACCCAGAACATTTTTCTTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCCCTGTGCCCGGCTCTAAGGCTGGCACCCAGAACATTTTTCTTGAA  100

seq1  TGACTTGTGAATCTTAGCGGGTATCTGGGCACGCAGGTGACTGACTATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGTGAATCTTAGCGGGTATCTGGGCACGCAGGTGACTGACTATCC  150

seq1  ACAGGCAGATGCATGGTGTCATAGCCACAGGGTGGCGCTTCTAGCTCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCAGATGCATGGTGTCATAGCCACAGGGTGGCGCTTCTAGCTCCCA  200

seq1  CAAACACGGACTCTGCATGGGTCTCCTCCTCTTCAACGGACCGGTTCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACACGGACTCTGCATGGGTCTCCTCCTCTTCAACGGACCGGTTCCAA  250

seq1  CACTTAGGGTGCTCCAGGCCTGTTAGATATATGCTTTGTCGCTCTACCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGGGTGCTCCAGGCCTGTTAGATATATGCTTTGTCGCTCTACCCA  300

seq1  AAGAGATCCTGTCTTACTTATATTTTCATCTCCAGAGTCTTGGGTCACCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATCCTGTCTTACTTATATTTTCATCTCCAGAGTCTTGGGTCACCC  350

seq1  CTCATCAGTGTAGTGACACCCCCTCCCGCCCCTTGTTTTGCGCAGGCGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCAGTGTAGTGACACCCCCTCCCGCCCCTTGTTTTGCGCAGGCGCA  400

seq1  ATACTCCCGCCCCTTCCATCCCTGCTGTGGAGGGCGGGGCGCGTGCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCCGCCCCTTCCATCCCTGCTGTGGAGGGCGGGGCGCGTGCTGTC  450

seq1  CGGGCGGCTGCAGCTTCATGGGGCTCTTGGGACTCCTGAGCCTGCTGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCGGCTGCAGCTTCATGGGGCTCTTGGGACTCCTGAGCCTGCTGCAC  500

seq1  TCAGCCTTCTTTGGGAACCAGGTAGGATGCAGGGAGTCCTGGTCGGAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTTCTTTGGGAACCAGGTAGGATGCAGGGAGTCCTGGTCGGAGAT  550

seq1  GAGGGTGTGGGGAGAGTCAGGTGAGGTCCTGACTGTGGGAATGGCGGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGTGTGGGGAGAGTCAGGTGAGGTCCTGACTGTGGGAATGGCGGCCC  600

seq1  CGAGGACAGTAGAGGACACTCAACTGTCAAGCTAGCCAACTTGATGGGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGGACAGTAGAGGACACTCAACTGTCAAGCTAGCCAACTTGATGGGTC  650

seq1  GGGGGGCCTTCCGTAGTTGCTCTGGAGACAGTTGCCAAGGAAACCTCCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGGCCTTCCGTAGTTGCTCTGGAGACAGTTGCCAAGGAAACCTCCTG  700

seq1  AGCATGTGCATGGGGCTGAGTTCCCCTCCCTGTACTGCAGCGACCCCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGTGCATGGGGCTGAGTTCCCCTCCCTGTACTGCAGCGACCCCTCC  750

seq1  CCCGTCCCGCGCAGGCGCAGGTTTACCTTGAGGGAGACTCCTTCAGCAGG  800
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCCGTCCCGCGCA-GCGCAGGTTTACCTTGAGGGAGACTCCTTCAGCAGG  799

seq1  AAACCTCATTTCTTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTCATTTCTTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTTTCCTT  849