BAC Information

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BAC

Clone NameB6Ng01-259G17
Chromosome10 (Build37)
Map Location 42,679,717 - 42,846,595
singlet/doubletdoublet
Overlap geneScml4, C230040G06, Sobp
Upstream geneArmc2, 1700016J18Rik, LOC624784, Foxo3a, Lace1, LOC666540, Snx3, Nr2e1, c222389, Ostm1, Sec63, EG666569
Downstream gene9030612E09Rik, Pdss2, LOC100042155, AK122525, LOC100042179, 1700021F05Rik, Cd24a, EG668190, LOC100041418, 1700027J07Rik, EG668192, Qrsl1, Rtn4ip1, Aim1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-259G17.bB6Ng01-259G17.g
ACCGA064604GA064605
length1,115828
definitionB6Ng01-259G17.b B6Ng01-259G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,679,717 - 42,680,827)(42,845,770 - 42,846,595)
sequence
gaattccagatatttaaggtttggccaaacaaaacaaaataaaacaaaac
accaagaagcaatctcattagtcttggaatgaggggctgccacatcacag
aaggcccagcggaaccaattcttcttgcctgttttttcatagaatctaat
tagttgaccaaatcagcattgcaatactgcaagtataattaattttcatc
cctctcaaaaatcttgtcaaacagcgcagctaaatagcttctcaaatgta
aaacatgcaaggccacttcctctaaacagaccttccagggtcagaccgta
agggttaccctggcccagatgagcaggacttgaactcacacctgatagtt
cacaggcttgctcttccagctgcacagcattgcttcagcttggagtggat
aatgatcacattttgcataattccaaattaaagagtgtgggtgctcatgt
tccaaacatttccaattacatttgtctgttaaacacttgggggagggagg
tttcaagagagttctgttgcctaaagcattttaaatgttttatgaaacac
attattccctttgtgaagattttagataaaagatgtggcctgtgtgtatg
agtctgtgtgtgtatttgtgtatctctctctgtgtgtctgtctgtgcctc
tgtgtgtgtatgtgtctgtttatggggctggagagatgactcagcagtta
agagcactgactgcccttccgaaggtcctgagttcaaatcccagcaacca
caccgtgactcacaaccctctgtaatgggatcctatgccctcttctggtg
tgtttgaaaacagcctacagtgtgtttgaaaacagctacagtgtacccaa
atataataaataaatcttaaggaaaaaaaaaaagagtcgccactttctga
aaccagatcactatgttttataaaaaaaaaaaaaaggatgtctctgtgtg
tgtctgtatgtctttctgtgcctgtctaataaacctgtgtgtgtatattt
gtgtctgtctgtgtgtgtgtgtctatgcatcctcagaatactggagttga
aaaatctagaagtggttgtgagggatagcactattgcatgttttctcaaa
attcttttccagctt
gaattcaatgagttggaattttagtagcagtctctaagaattaggctcac
aatcttcactggaactaggagacaagtaaggaaattgtctggacatcttt
ggggacagtcaagagtagggttcactttccctcgggaggagattagaatg
atctccaagagcctggggcgcccattctgaatgcagaacactgagaataa
cagtcctaggagtgggcctagcaatttcttttttaaagctctacttacaa
caacaaaatactttgcattcctccacagaagatggctgtagagcagggcc
ttttgtcattctacgatatcgatggactgctggcagagaataaggccaag
aaataaggcgcagtatcacaacactaatgataccacttacactctgcagt
cagtctttgaggaaaggcatctgatgccactggaagagcagtccagagta
cactgttagacagtatgtgtgtgtgtatatgtatatgtacatgtgtatgt
atatatacccacatattttaaaagcatattgtgtgtatatatatatgtgt
gtgtgtgtatatatatatgcgcttttaaaatatagtgataaagtttaaga
taaaactgaattataagcttctatggcatgcatttttgaaagatggctaa
tggaaattgaatgaagaaaaagaaataaaaagggatgaaagcacatgact
gatcctaggtatgatggagaagaaagtttatttacaggtatgtgggagag
tgtagccagaggcagacacatctgggagagtccagagtggtcatgaccct
ggaccatgagggaaagagggggagggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_42679717_42680827
seq2: B6Ng01-259G17.b_48_1162

seq1  GAATTCCAGATATTTAAGGTTTGGCCAAACAAAACAAAATAAAACAAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGATATTTAAGGTTTGGCCAAACAAAACAAAATAAAACAAAAC  50

seq1  ACCAAGAAGCAATCTCATTAGTCTTGGAATGAGGGGCTGCCACATCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAAGCAATCTCATTAGTCTTGGAATGAGGGGCTGCCACATCACAG  100

seq1  AAGGCCCAGCGGAACCAATTCTTCTTGCCTGTTTTTTCATAGAATCTAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCCAGCGGAACCAATTCTTCTTGCCTGTTTTTTCATAGAATCTAAT  150

seq1  TAGTTGACCAAATCAGCATTGCAATACTGCAAGTATAATTAATTTTCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTGACCAAATCAGCATTGCAATACTGCAAGTATAATTAATTTTCATC  200

seq1  CCTCTCAAAAATCTTGTCAAACAGCGCAGCTAAATAGCTTCTCAAATGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAAAAATCTTGTCAAACAGCGCAGCTAAATAGCTTCTCAAATGTA  250

seq1  AAACATGCAAGGCCACTTCCTCTAAACAGACCTTCCAGGGTCAGACCGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCAAGGCCACTTCCTCTAAACAGACCTTCCAGGGTCAGACCGTA  300

seq1  AGGGTTACCCTGGCCCAGATGAGCAGGACTTGAACTCACACCTGATAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTACCCTGGCCCAGATGAGCAGGACTTGAACTCACACCTGATAGTT  350

seq1  CACAGGCTTGCTCTTCCAGCTGCACAGCATTGCTTCAGCTTGGAGTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGCTTGCTCTTCCAGCTGCACAGCATTGCTTCAGCTTGGAGTGGAT  400

seq1  AATGATCACATTTTGCATAATTCCAAATTAAAGAGTGTGGGTGCTCATGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATCACATTTTGCATAATTCCAAATTAAAGAGTGTGGGTGCTCATGT  450

seq1  TCCAAACATTTCCAATTACATTTGTCTGTTAAACACTTGGGGGAGGGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACATTTCCAATTACATTTGTCTGTTAAACACTTGGGGGAGGGAGG  500

seq1  TTTCAAGAGAGTTCTGTTGCCTAAAGCATTTTAAATGTTTTATGAAACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGAGAGTTCTGTTGCCTAAAGCATTTTAAATGTTTTATGAAACAC  550

seq1  ATTATTCCCTTTGTGAAGATTTTAGATAAAAGATGTGGCCTGTGTGTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTCCCTTTGTGAAGATTTTAGATAAAAGATGTGGCCTGTGTGTATG  600

seq1  AGTCTGTGTGTGTATTTGTGTATCTCTCTCTGTGTGTCTGTCTGTGCCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGTGTGTGTATTTGTGTATCTCTCTCTGTGTGTCTGTCTGTGCCTC  650

seq1  TGTGTGTGTATGTGTCTGTTTATGGGGCTGGAGAGATGACTCAGCAGTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTATGTGTCTGTTTATGGGGCTGGAGAGATGACTCAGCAGTTA  700

seq1  AGAGCACTGACTGCCCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACTGACTGCCCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCA  750

seq1  CACCGTGACTCACAACCCTCTGTAATGGGATCCTATGCCCTCTTCTGGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCGTGACTCACAACCCTCTGTAATGGGATCCTATGCCCTCTTCTGGTG  800

seq1  TGTTTGAAAACAGCCTACAGTGTGTTTGAAAACAGCTACAGTGTACCCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGAAAACAGCCTACAGTGTGTTTGAAAACAGCTACAGTGTACCCAA  850

seq1  ATATAATAAATAAATCTTAAGGAAAAAAAAAAAGAGTCGCCACTTTCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAATAAATAAATCTTAAGGAAAAAAAAAAAGAGTCGCCACTTTCTGA  900

seq1  AACCAGATCACTATGTTTATAAAAAAAAAAAAAAAGGATGTCTCTGTGTG  950
      ||||||||||||||||||   |||||||||||||||||||||||||||||
seq2  AACCAGATCACTATGTTTTATAAAAAAAAAAAAAAGGATGTCTCTGTGTG  950

seq1  TGTCTGTATGTCTTTCTGTGCCTGTCT-ATAAACCTGTGTGTGTATATTT  999
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TGTCTGTATGTCTTTCTGTGCCTGTCTAATAAACCTGTGTGTGTATATTT  1000

seq1  GTGTCTGTCTGTGTGTGTGTGTCTATGCATCTCCAG-ATACTGGAGTTGA  1048
      |||||||||||||||||||||||||||||||  ||| |||||||||||||
seq2  GTGTCTGTCTGTGTGTGTGTGTCTATGCATCCTCAGAATACTGGAGTTGA  1050

seq1  AAAATCTAAGAAGTGGTTGTGA-GGATAGCAGCTATTGCATG--TTCTCA  1095
      ||||||| |||||||||||||| |||||||| ||||||||||  ||||||
seq2  AAAATCT-AGAAGTGGTTGTGAGGGATAGCA-CTATTGCATGTTTTCTCA  1098

seq1  AATATC-TTTCCAGCTT  1111
      ||  || ||||||||||
seq2  AAATTCTTTTCCAGCTT  1115

seq1: chr10_42845770_42846595
seq2: B6Ng01-259G17.g_71_898 (reverse)

seq1  TCCCCTCCCCCTC-TTCCCTCATGGTCCAGGGTCATGACCACTCTGGACT  49
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCCCCCTCTTTCCCTCATGGTCCAGGGTCATGACCACTCTGGACT  50

seq1  CTCCCAGATGTGTCTGCCTCTGGCTACACTCTCCCACATACCTGT-AATA  98
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTCCCAGATGTGTCTGCCTCTGGCTACACTCTCCCACATACCTGTAAATA  100

seq1  AACTTTCTTCTCCATCATACCTAGGATCAGTCATGTGCTTTCATCCCTTT  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTCTTCTCCATCATACCTAGGATCAGTCATGTGCTTTCATCCCTTT  150

seq1  TTATTTCTTTTTCTTCATTCAATTTCCATTAGCCATCTTTCAAAAATGCA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCTTTTTCTTCATTCAATTTCCATTAGCCATCTTTCAAAAATGCA  200

seq1  TGCCATAGAAGCTTATAATTCAGTTTTATCTTAAACTTTATCACTATATT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATAGAAGCTTATAATTCAGTTTTATCTTAAACTTTATCACTATATT  250

seq1  TTAAAAGCGCATATATATATACACACACACACATATATATATACACACAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGCGCATATATATATACACACACACACATATATATATACACACAA  300

seq1  TATGCTTTTAAAATATGTGGGTATATATACATACACATGTACATATACAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTTTTAAAATATGTGGGTATATATACATACACATGTACATATACAT  350

seq1  ATACACACACACATACTGTCTAACAGTGTACTCTGGACTGCTCTTCCAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACACACATACTGTCTAACAGTGTACTCTGGACTGCTCTTCCAGT  400

seq1  GGCATCAGATGCCTTTCCTCAAAGACTGACTGCAGAGTGTAAGTGGTATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCAGATGCCTTTCCTCAAAGACTGACTGCAGAGTGTAAGTGGTATC  450

seq1  ATTAGTGTTGTGATACTGCGCCTTATTTCTTGGCCTTATTCTCTGCCAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGTTGTGATACTGCGCCTTATTTCTTGGCCTTATTCTCTGCCAGC  500

seq1  AGTCCATCGATATCGTAGAATGACAAAAGGCCCTGCTCTACAGCCATCTT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCATCGATATCGTAGAATGACAAAAGGCCCTGCTCTACAGCCATCTT  550

seq1  CTGTGGAGGAATGCAAAGTATTTTGTTGTTGTAAGTAGAGCTTTAAAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAGGAATGCAAAGTATTTTGTTGTTGTAAGTAGAGCTTTAAAAAA  600

seq1  GAAATTGCTAGGCCCACTCCTAGGACTGTTATTCTCAGTGTTCTGCATTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGCTAGGCCCACTCCTAGGACTGTTATTCTCAGTGTTCTGCATTC  650

seq1  AGAATGGGCGCCCCAGGCTCTTGGAGATCATTCTAATCTCCTCCCGAGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGGCGCCCCAGGCTCTTGGAGATCATTCTAATCTCCTCCCGAGGG  700

seq1  AAAGTGAACCCTACTCTTGACTGTCCCCAAAGATGTCCAGACAATTTCCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGAACCCTACTCTTGACTGTCCCCAAAGATGTCCAGACAATTTCCT  750

seq1  TACTTGTCTCCTAGTTCCAGTGAAGATTGTGAGCCTAATTCTTAGAGACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGTCTCCTAGTTCCAGTGAAGATTGTGAGCCTAATTCTTAGAGACT  800

seq1  GCTACTAAAATTCCAACTCATTGAATTC  826
      ||||||||||||||||||||||||||||
seq2  GCTACTAAAATTCCAACTCATTGAATTC  828