BAC Information

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BAC

Clone NameB6Ng01-260N13
Chromosome10 (Build37)
Map Location 20,887,636 - 21,019,696
singlet/doubletdoublet
Overlap geneLOC100039870, Hbs1l
Upstream geneMtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344, Pde7b, LOC667202, Ahi1, Myb
Downstream geneAldh8a1, LOC100039906, 1700020N01Rik, EG432436, LOC100039936, LOC628133, Sgk, LOC667254, LOC665523, 4930444G20Rik, LOC100039992, E030030I06Rik, LOC665543, Ube2q2l, Raet1e, LOC100040023, LOC100038830, LOC667280, EG667281
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-260N13.bB6Ng01-260N13.g
ACCGA065665GA065666
length1,0501,066
definitionB6Ng01-260N13.b B6Ng01-260N13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,887,636 - 20,888,681)(21,018,636 - 21,019,696)
sequence
gaattctggaatccacagttgagtcttgaatttgagcactggactaatcc
tatcttttcggtattcctgctccctttgagacagtgtctatgtagcccag
gctggcttcaattactctgtgaagccaaagatgaccttggatttctaatc
tcccggcccctacctcctaagtgttcagatgcagacaagccttaccgtgc
ctggtttatgctgttctggggatgcagccacggctctgtgcatgctggga
aagcactctactacctacgtcacatccgcagccttcttacctccttggga
gtctatttatttactcctctacttatttttataaatgttctttgtcaaca
tcctcaggagtcatactataagctgggtggcaggaattatcctacattaa
tctttttacacacttagttgctagaatgtgagcatagaaatgtttgttga
gctgttgacagttgattgggaactagttggggctgcttatgtattagttt
attttaaccatacttctttaaaggattttactgcattttttagcttttaa
tgttttacatttttttaagattttattttttatttctattttattttatt
ttattttattttattttattttattttattttattttatgtgtgttaatg
gtttgcctgaatgtgtgtatgtgtatcacatctatgtctggtgcctgtgg
aggtccgaagagggtatcagactccctggaactaaagttatgaattattg
agcctgggtcctctgcaagagcaacaagtgttttttggcttctgagtcaa
ctctccagactctcgtttttactatgtttttttttttatttttaaatttt
gcatatgcatgcgtgtctatgtgggagtgtgtgtaactgagtgcagttgc
ccgtggcggacaaaaagatggcgttgggataccttggaacctggagttac
aaccagctgtgaaagcagttgacagaagtggctggtacggaactctggtt
ctgcacaactctgttaaaacatgaacaaccgccgtacttttgggttgtta

gaattcaatccctaataccatcaatcaggtgtagtcatgtgtgtgtctgt
aaccacagtgctttgggtggcagagacacagggtctctgagttgctggtc
accagcctagccccacagttcagtgagaaatcctgacataaagaactaag
gggagaatgggacaaggcacctgaggtctctctgcactctatgcacgtgc
agaagcagcatgcacctaaacaaagacaaacaagacacacttgcgcgcgc
gcgcgcgcgcgcacacacacacacacacacacacacacacacagagagag
agagagagagagagagagagagagagagagaaaacaaaaattattcatgg
gtaaagaaagaaactcttgtaggtgaactcggtgggggcatatttactta
caaatccatccaaatatgaccaaagctggaggaccaccaggagttcaagg
ccaccctggcctatttttggttttcaaataatctattttaagtgttaaca
tgtgtgtataaagacatacacacacataagcatctttttcaacattacat
attatagtctcatgaacattctggtccaggatgacaatcatgcttacttg
aatgtttagacagctaagtcacagaaatcccttgctgaacaacgtacctg
ttgatggtgagatacagtagtcatcctccacagactgcccatacagatca
tcatcttcaaaatctacaagacaaacacaggactttacaagacaatcagc
cttttatatccgtgaggaaacacctggactagctacaaagcaagttaaca
tatcaattttcaagggggttgaaatgtctacttttctacaaattctaaga
acttttcccacaaaaaaagttattcattaacaatctatgttattgacaat
ctatactttaaaaacatacatatgtcttttgcttttaagttaattgggct
ctatttaatttttctcacattcctcctttccatctaaccacacatcttta
cagaagtggtaagcacagggtatacaagcaacatacagaacattgtttgg
tggggatcggaggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_20887636_20888681
seq2: B6Ng01-260N13.b_45_1094

seq1  GAATTCTGGAATCCACAGTTGAGTCTTGAATTTGAGCACTGGACTAATCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAATCCACAGTTGAGTCTTGAATTTGAGCACTGGACTAATCC  50

seq1  TATCTTTTCGGTATTCCTGCTCCCTTTGAGACAGTGTCTATGTAGCCCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTCGGTATTCCTGCTCCCTTTGAGACAGTGTCTATGTAGCCCAG  100

seq1  GCTGGCTTCAATTACTCTGTGAAGCCAAAGATGACCTTGGATTTCTAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTTCAATTACTCTGTGAAGCCAAAGATGACCTTGGATTTCTAATC  150

seq1  TCCCGGCCCCTACCTCCTAAGTGTTCAGATGCAGACAAGCCTTACCGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGGCCCCTACCTCCTAAGTGTTCAGATGCAGACAAGCCTTACCGTGC  200

seq1  CTGGTTTATGCTGTTCTGGGGATGCAGCCACGGCTCTGTGCATGCTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTTATGCTGTTCTGGGGATGCAGCCACGGCTCTGTGCATGCTGGGA  250

seq1  AAGCACTCTACTACCTACGTCACATCCGCAGCCTTCTTACCTCCTTGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACTCTACTACCTACGTCACATCCGCAGCCTTCTTACCTCCTTGGGA  300

seq1  GTCTATTTATTTACTCCTCTACTTATTTTTATAAATGTTCTTTGTCAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTTATTTACTCCTCTACTTATTTTTATAAATGTTCTTTGTCAACA  350

seq1  TCCTCAGGAGTCATACTATAAGCTGGGTGGCAGGAATTATCCTACATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGGAGTCATACTATAAGCTGGGTGGCAGGAATTATCCTACATTAA  400

seq1  TCTTTTTACACACTTAGTTGCTAGAATGTGAGCATAGAAATGTTTGTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTACACACTTAGTTGCTAGAATGTGAGCATAGAAATGTTTGTTGA  450

seq1  GCTGTTGACAGTTGATTGGGAACTAGTTGGGGCTGCTTATGTATTAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGACAGTTGATTGGGAACTAGTTGGGGCTGCTTATGTATTAGTTT  500

seq1  ATTTTAACCATACTTCTTTAAAGGATTTTACTGCATTTTTTAGCTTTTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAACCATACTTCTTTAAAGGATTTTACTGCATTTTTTAGCTTTTAA  550

seq1  TGTTTTACATTTTTTTAAGATTTTATTTTTTATTTCTATTTTATTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACATTTTTTTAAGATTTTATTTTTTATTTCTATTTTATTTTATT  600

seq1  TTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATGTGTGTTAATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTATTTTATTTTATTTTATTTTATTTTATTTTATGTGTGTTAATG  650

seq1  GTTTGCCTGAATGTGTGTATGTGTATCACATCTATGTCTGGTGCCTGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGCCTGAATGTGTGTATGTGTATCACATCTATGTCTGGTGCCTGTGG  700

seq1  AGGTCCGAAGAGGGTATCAGACTCCCTGGAACTAAAGTTATGAATTATTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCGAAGAGGGTATCAGACTCCCTGGAACTAAAGTTATGAATTATTG  750

seq1  AGCCTGGGTCCTCTGCAAGAGCAACAAGTG-TTTTTGGCTTCTGAGTCAA  799
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGCCTGGGTCCTCTGCAAGAGCAACAAGTGTTTTTTGGCTTCTGAGTCAA  800

seq1  CTCTCCAGACTCTCGTTTTTACTATGTTTTTTTTTTTTTTTTTTTTAGAT  849
      ||||||||||||||||||||||||||   ||||||||||| |||||| ||
seq2  CTCTCCAGACTCTCGTTTTTACTATG---TTTTTTTTTTTATTTTTAAAT  847

seq1  TTTGCATATGCATGCGTGTCTATGTGGGAGTGTGTGTAACTGAGTGCAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCATATGCATGCGTGTCTATGTGGGAGTGTGTGTAACTGAGTGCAGT  897

seq1  TGCCCGTGGCGGAC-AGAAGATGGCGTT-GGATACCTTGG-AGCTGGAGT  946
      |||||||||||||| | ||||||||||| ||||||||||| | |||||||
seq2  TGCCCGTGGCGGACAAAAAGATGGCGTTGGGATACCTTGGAACCTGGAGT  947

seq1  TACAGGCAGCTGTG-AAGCAGTTGACAGAGGTGCTGGGAACGGGACTCTG  995
      ||||  |||||||| |||||||||||||| |||   || |||| ||||||
seq2  TACAACCAGCTGTGAAAGCAGTTGACAGAAGTGGCTGGTACGGAACTCTG  997

seq1  GTTCTGCACAGCTCTGTTTAAAACATG-ACAA-CGCCTTACTTTTGGG-T  1042
      |||||||||| ||||| |||||||||| |||| |||| |||||||||| |
seq2  GTTCTGCACAACTCTG-TTAAAACATGAACAACCGCCGTACTTTTGGGTT  1046

seq1  GTTA  1046
      ||||
seq2  GTTA  1050

seq1: chr10_21018636_21019696
seq2: B6Ng01-260N13.g_66_1131 (reverse)

seq1  CATCCT-CGATCCCCA-CAAACAATG-TCTGTATGGTTGCTTGTATACCC  47
      |||||| ||||||||| ||||||||| ||||||| |||||||||||||||
seq2  CATCCTCCGATCCCCACCAAACAATGTTCTGTAT-GTTGCTTGTATACCC  49

seq1  TGTGCTTACCACTTCTGTAAAGATGTGTGGTTAGATGG-AAGGAGGAATG  96
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGTGCTTACCACTTCTGTAAAGATGTGTGGTTAGATGGAAAGGAGGAATG  99

seq1  TGAG-AAAATTAAATAGAGCCCAATTAACTTAAAAGCAAAAGACATATGT  145
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAAATTAAATAGAGCCCAATTAACTTAAAAGCAAAAGACATATGT  149

seq1  ATGTTTTTAAAGTATAGATTGTCAATAACATAGATTGTTAATGAATAAC-  194
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ATGTTTTTAAAGTATAGATTGTCAATAACATAGATTGTTAATGAATAACT  199

seq1  TTTTTTGTGGGAAAAGTTCTTAGAATTTGTAGAAAAGTAGACATTTCAAC  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTGGGAAAAGTTCTTAGAATTTGTAGAAAAGTAGACATTTCAAC  249

seq1  CCCCTTGAAAATTGATATGTTAACTTGCTTTGTAGCTAGTCCAGGTGTTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTGAAAATTGATATGTTAACTTGCTTTGTAGCTAGTCCAGGTGTTT  299

seq1  CCTCACGGATATAAAAGGCTGATTGTCTTGTAAAGTCCTGTGTTTGTCTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACGGATATAAAAGGCTGATTGTCTTGTAAAGTCCTGTGTTTGTCTT  349

seq1  GTAGATTTTGAAGATGATGATCTGTATGGGCAGTCTGTGGAGGATGACTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATTTTGAAGATGATGATCTGTATGGGCAGTCTGTGGAGGATGACTA  399

seq1  CTGTATCTCACCATCAACAGGTACGTTGTTCAGCAAGGGATTTCTGTGAC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCTCACCATCAACAGGTACGTTGTTCAGCAAGGGATTTCTGTGAC  449

seq1  TTAGCTGTCTAAACATTCAAGTAAGCATGATTGTCATCCTGGACCAGAAT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGTCTAAACATTCAAGTAAGCATGATTGTCATCCTGGACCAGAAT  499

seq1  GTTCATGAGACTATAATATGTAATGTTGAAAAAGATGCTTATGTGTGTGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGAGACTATAATATGTAATGTTGAAAAAGATGCTTATGTGTGTGT  549

seq1  ATGTCTTTATACACACATGTTAACACTTAAAATAGATTATTTGAAAACCA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTTATACACACATGTTAACACTTAAAATAGATTATTTGAAAACCA  599

seq1  AAAATAGGCCAGGGTGGCCTTGAACTCCTGGTGGTCCTCCAGCTTTGGTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGGCCAGGGTGGCCTTGAACTCCTGGTGGTCCTCCAGCTTTGGTC  649

seq1  ATATTTGGATGGATTTGTAAGTAAATATGCCCCCACCGAGTTCACCTACA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGGATGGATTTGTAAGTAAATATGCCCCCACCGAGTTCACCTACA  699

seq1  AGAGTTTCTTTCTTTACCCATGAATAATTTTTGTTTTCTCTCTCTCTCTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTCTTTCTTTACCCATGAATAATTTTTGTTTTCTCTCTCTCTCTC  749

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTCTCTCTGTGTGTGTGTGTGTGTGTGTGTGTG  799

seq1  TGTGTGCGCGCGCGCGCGCGCGCGCAAGTGTGTCTTGTTTGTCTTTGTTT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCGCGCGCGCGCGCGCGCGCAAGTGTGTCTTGTTTGTCTTTGTTT  849

seq1  AGGTGCATGCTGCTTCTGCACGTGCATAGAGTGCAGAGAGACCTCAGGTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGCATGCTGCTTCTGCACGTGCATAGAGTGCAGAGAGACCTCAGGTG  899

seq1  CCTTGTCCCATTCTCCCCTTAGTTCTTTATGTCAGGATTTCTCACTGAAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTCCCATTCTCCCCTTAGTTCTTTATGTCAGGATTTCTCACTGAAC  949

seq1  TGTGGGGCTAGGCTGGTGACCAGCAACTCAGAGACCCTGTGTCTCTGCCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGCTAGGCTGGTGACCAGCAACTCAGAGACCCTGTGTCTCTGCCA  999

seq1  CCCAAAGCACTGTGGTTACAGACACACACATGACTACACCTGATTGATGG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGCACTGTGGTTACAGACACACACATGACTACACCTGATTGATGG  1049

seq1  TATTAGGGATTGAATTC  1061
      |||||||||||||||||
seq2  TATTAGGGATTGAATTC  1066