BAC Information

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BAC

Clone NameB6Ng01-261C19
Chromosome10 (Build37)
Map Location 6,392,737 - 6,541,102
singlet/doubletdoublet
Overlap genePlekhg1
Upstream geneEsr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12, Mthfd1l
Downstream geneIyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333, LOC666541, 9230019H11Rik, LOC100041405, LOC672213, Lrp11, Pcmt1, Nup43, Lats1, Katna1, BC013529, Ppil4, LOC665035
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261C19.bB6Ng01-261C19.g
ACCGA065909GA065910
length1,1281,018
definitionB6Ng01-261C19.b B6Ng01-261C19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,539,980 - 6,541,102)(6,392,737 - 6,393,758)
sequence
gaattcagtggcgaacagtactggtcagtctttgtactttgataccaaag
ggttttggcagggacacagaagtgtatgtggtcccttaggaaagagcagg
aactcgggagccaggtataacaaaccacagtgctgtcctcttgggggcag
cactttctgtcatatgctcctgtctgacaatgtggttgctacttaaacag
aacagaagggtcagagaattgtagacagatgtgttgcctctttctatctt
ctgcagatggaagactaggaaataagacggctgaccatgattggcaagat
tagattaggcagttctaatgtacaaaaacttcaaatgtcagagaaggata
ggtctggtatatatagagtttgtttacttgaggatatcagaaacccatgc
tctttctgttggcataatatgtatgtgtgtgttcagctcaaatactacag
tttggggggcaccataaaaaaaacaacaacaacaaaaaccacatatctgc
cccctgcccctgtgagttatttcctccagcttcttgtttagggtttctcc
cacccaaaatatttgatgaaatgaccttagaatggagatgctataagagt
atgaggctaaaggggagcctaaggaacagacgcatgccccttactgttgc
aaagtcacactgggtatcttttcttttctttttcttttcttttctcttct
tttcttttttttaatatatatatatagtaacatcagatgcaccagaagaa
ggcatcagaccccattacagatgtggttgctaggaattgaactcaggatc
tggaagagctgtcagtactcttaaccactgagctgtctctccaacctcat
accaggcatcttgattgttactctttctgctggcattttctgagcctctt
atactattgagttgagtaactcaactctggccagagaactccttttcagt
aaagatgccaagggttcagatgacagattccccacattagttaagattaa
gcgcagctgtgactgtgatcaacagtacccatgatccttacatgcactgg
gatcatctctggagcatcattgtttattcttaacatccctgtattgaggg
tgttctctccatccatgagatggaggac
gaattcacttgaactcgctgatatcctctgtctcccgagtgctagggttg
tttttgtttttgtttttttcgagacagggtttctctgtatagctctggct
gtcctggaactcactttgtagaccaggctggcctcagaaatccgtctgcc
tctgcctcccaagtgctgggattaaaggcgtgcgccaccacgcccagcta
gtgctagggtttttaaacgaggatacagcctttatcaagctcactctgtc
gctgtgctaaaccataatagaagtgggatttgtgggaaagatttccagaa
ccatatccttatggataaggaagacagatccttggcctttacacaagaaa
ctacaataaatgctctaggaattgtttgttcattaagacagctcaccagt
ggacactcaaatcaggatactaacagctcctctttccaggaaataaaact
gggcacataacattcaataagacaaaactatttcctttttctttagtggt
gagatttttttagaaaagatttctatttatgtattatgtatacatgtttt
atctgcatgtaagcctgcatgccagaaaagggcaccagatctcattatag
atggttgtgaaccaccatgtggttgctgggatttgaactcaggacctcca
ggagagcagccactgctcttaaccactgagccatctctccagccctagtg
gtgagatttaactcagcacctcagcatgctagtttgcaagcacagctctg
ctaggaagtgtttcccatttcctaatcttttgtcagaggaacagaagccc
ctccttgatacaacttggcatagcaaagtttcactgtacacattacatct
gctatatcagcagaagcactatgtttttagcgtttttttttctgtcttat
ttttttttttttgagagaaagtttcagtagttgccagcctgaatctaaac
tcctggattcatgcaactctctttgccctctgtttccaatgtagcaagga
ccttgggtgctactgtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_6539980_6541102
seq2: B6Ng01-261C19.b_44_1171 (reverse)

seq1  GTCCTCCTTCTCAT-GATGGAG-GAACA-CCTC-ATACAGGGATG-TAAG  45
      ||||||| |||||| ||||||| ||||| |||| ||||||||||| ||||
seq2  GTCCTCCATCTCATGGATGGAGAGAACACCCTCAATACAGGGATGTTAAG  50

seq1  AAATGACAATGATGCTCCAGAGATGATCCCAGTGCATGGTAGGATCATGG  95
      ||   |||||||||||||||||||||||||||||||||  ||||||||||
seq2  AATAAACAATGATGCTCCAGAGATGATCCCAGTGCATGTAAGGATCATGG  100

seq1  GTACTGTTGATCACAGTCACAGCTGCGCTTAATCTTAACTAATGTGGGGA  145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTGTTGATCACAGTCACAGCTGCGCTTAATCTTAACTAATGTGGGGA  150

seq1  ATCTGTCATCTTGAACCCTTGGCATCTTTACTGAAAAGGAGTTCTCTGGC  195
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCATC-TGAACCCTTGGCATCTTTACTGAAAAGGAGTTCTCTGGC  199

seq1  CAGAGTTGAGTTACTCAACTCAATAGTATAAGAGGCTCAGAAAATGCCAG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTGAGTTACTCAACTCAATAGTATAAGAGGCTCAGAAAATGCCAG  249

seq1  CAG-AAGAGTAACAATCAAGATGCCTGGTATGAGGTTGGAGAGACAGCTC  294
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAGTAACAATCAAGATGCCTGGTATGAGGTTGGAGAGACAGCTC  299

seq1  AGTGGTTAAGAGTACTGACAGCTCTTCCAGATCCTGAGTTCAATTCCTAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTAAGAGTACTGACAGCTCTTCCAGATCCTGAGTTCAATTCCTAG  349

seq1  CAACCACATCTGTAATGGGGTCTGATGCCTTCTTCTGGTGCATCTGATGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACATCTGTAATGGGGTCTGATGCCTTCTTCTGGTGCATCTGATGT  399

seq1  TACTATATATATATATTAAAAAAAAGAAAAGAAGAGAAAAGAAAAGAAAA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATATATATATATTAAAAAAAAGAAAAGAAGAGAAAAGAAAAGAAAA  449

seq1  AGAAAAGAAAAGATACCCAGTGTGACTTTGCAACAGTAAGGGGCATGCGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGAAAAGATACCCAGTGTGACTTTGCAACAGTAAGGGGCATGCGT  499

seq1  CTGTTCCTTAGGCTCCCCTTTAGCCTCATACTCTTATAGCATCTCCATTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCCTTAGGCTCCCCTTTAGCCTCATACTCTTATAGCATCTCCATTC  549

seq1  TAAGGTCATTTCATCAAATATTTTGGGTGGGAGAAACCCTAAACAAGAAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCATTTCATCAAATATTTTGGGTGGGAGAAACCCTAAACAAGAAG  599

seq1  CTGGAGGAAATAACTCACAGGGGCAGGGGGCAGATATGTGGTTTTTGTTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGGAAATAACTCACAGGGGCAGGGGGCAGATATGTGGTTTTTGTTG  649

seq1  TTGTTGTTTTTTTTATGGTGCCCCCCAAACTGTAGTATTTGAGCTGAACA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTTTTTTTATGGTGCCCCCCAAACTGTAGTATTTGAGCTGAACA  699

seq1  CACACATACATATTATGCCAACAGAAAGAGCATGGGTTTCTGATATCCTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATACATATTATGCCAACAGAAAGAGCATGGGTTTCTGATATCCTC  749

seq1  AAGTAAACAAACTCTATATATACCAGACCTATCCTTCTCTGACATTTGAA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAACAAACTCTATATATACCAGACCTATCCTTCTCTGACATTTGAA  799

seq1  GTTTTTGTACATTAGAACTGCCTAATCTAATCTTGCCAATCATGGTCAGC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGTACATTAGAACTGCCTAATCTAATCTTGCCAATCATGGTCAGC  849

seq1  CGTCTTATTTCCTAGTCTTCCATCTGCAGAAGATAGAAAGAGGCAACACA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTTATTTCCTAGTCTTCCATCTGCAGAAGATAGAAAGAGGCAACACA  899

seq1  TCTGTCTACAATTCTCTGACCCTTCTGTTCTGTTTAAGTAGCAACCACAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTACAATTCTCTGACCCTTCTGTTCTGTTTAAGTAGCAACCACAT  949

seq1  TGTCAGACAGGAGCATATGACAGAAAGTGCTGCCCCCAAGAGGACAGCAC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGACAGGAGCATATGACAGAAAGTGCTGCCCCCAAGAGGACAGCAC  999

seq1  TGTGGTTTGTTATACCTGGCTCCCGAGTTCCTGCTCTTTCCTAAGGGACC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTTGTTATACCTGGCTCCCGAGTTCCTGCTCTTTCCTAAGGGACC  1049

seq1  ACATACACTTCTGTGTCCCTGCCAAAACCCTTTGGTATCAAAGTACAAAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACACTTCTGTGTCCCTGCCAAAACCCTTTGGTATCAAAGTACAAAG  1099

seq1  ACTGACCAGTACTGTTCGCCACTGAATTC  1123
      |||||||||||||||||||||||||||||
seq2  ACTGACCAGTACTGTTCGCCACTGAATTC  1128

seq1: chr10_6392737_6393758
seq2: B6Ng01-261C19.g_66_1083

seq1  GAATTCACTTGAACTCGCTGATATCCTCTGTCTCCCGAGTGCTAGGGTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTGAACTCGCTGATATCCTCTGTCTCCCGAGTGCTAGGGTTG  50

seq1  TTTTTGTTTTTGTTTTTTTCGAGACAGGGTTTCTCTGTATAGCTCTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTGTTTTTTTCGAGACAGGGTTTCTCTGTATAGCTCTGGCT  100

seq1  GTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAGAAATCCGTCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCAGAAATCCGTCTGCC  150

seq1  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCAGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCAGCTA  200

seq1  GTGCTAGGGTTTTTAAACGAGGATACAGCCTTTATCAAGCTCACTCTGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTAGGGTTTTTAAACGAGGATACAGCCTTTATCAAGCTCACTCTGTC  250

seq1  GCTGTGCTAAACCATAATAGAAGTGGGATTTGTGGGAAAGATTTCCAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGCTAAACCATAATAGAAGTGGGATTTGTGGGAAAGATTTCCAGAA  300

seq1  CCATATCCTTATGGATAAGGAAGACAGATCCTTGGCCTTTACACAAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATCCTTATGGATAAGGAAGACAGATCCTTGGCCTTTACACAAGAAA  350

seq1  CTACAATAAATGCTCTAGGAATTGTTTGTTCATTAAGACAGCTCACCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAATAAATGCTCTAGGAATTGTTTGTTCATTAAGACAGCTCACCAGT  400

seq1  GGACACTCAAATCAGGATACTAACAGCTCCTCTTTCCAGGAAATAAAACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTCAAATCAGGATACTAACAGCTCCTCTTTCCAGGAAATAAAACT  450

seq1  GGGCACATAACATTCAATAAGACAAAACTATTTCCTTTTTCTTTAGTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACATAACATTCAATAAGACAAAACTATTTCCTTTTTCTTTAGTGGT  500

seq1  GAGATTTTTTTAGAAAAGATTTCTATTTATGTATTATGTATACATGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTTTTTTAGAAAAGATTTCTATTTATGTATTATGTATACATGTTTT  550

seq1  ATCTGCATGTAAGCCTGCATGCCAGAAAAGGGCACCAGATCTCATTATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCATGTAAGCCTGCATGCCAGAAAAGGGCACCAGATCTCATTATAG  600

seq1  ATGGTTGTGAACCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTGTGAACCACCATGTGGTTGCTGGGATTTGAACTCAGGACCTCCA  650

seq1  GGAGAGCAGCCACTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGCAGCCACTGCTCTTAACCACTGAGCCATCTCTCCAGCCCTAGTG  700

seq1  GTGAGATTTAACTCAGCACCTCAGGCATGCTAGTTTGCAAGCACAGCTCT  750
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GTGAGATTTAACTCAGCACCTCA-GCATGCTAGTTTGCAAGCACAGCTCT  749

seq1  GCTAGGAAGTGTTTCCCATTTCCTAATCTTTTGTCAGAGGAACAGAAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGAAGTGTTTCCCATTTCCTAATCTTTTGTCAGAGGAACAGAAGCC  799

seq1  CCTCCTTGATACAACTTGGCATAGCAAAGTTTCACTGTACACATTACATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTGATACAACTTGGCATAGCAAAGTTTCACTGTACACATTACATC  849

seq1  TGCTATATCAGCAGAAGCACTATGTTTTTAGCGTTTTTTTTTTTTTTTTT  900
      |||||||||||||||||||||||||||||||||    ||||||||| | |
seq2  TGCTATATCAGCAGAAGCACTATGTTTTTAGCG----TTTTTTTTTCTGT  895

seq1  TTTTTTTTTTTTTTTTTGAGA-TAGGTTTCAGTATGTTGCCCAGGCTGAT  949
       || |||||||||||||||||  | ||||||||| |||| |||| |||| 
seq2  CTTATTTTTTTTTTTTTGAGAGAAAGTTTCAGTA-GTTG-CCAGCCTGAA  943

seq1  CTTAAACTCCTGGATTCATGCACTTCTCTT--GCCTCTGTTTCCCATGTA  997
        ||||||||||||||||||||  ||||||   ||||||||||| |||||
seq2  TCTAAACTCCTGGATTCATGCAACTCTCTTTGCCCTCTGTTTCCAATGTA  993

seq1  GCAGGGACTTTGGGTGCTACTGTAC  1022
      ||| |||| ||||||||||||||||
seq2  GCAAGGACCTTGGGTGCTACTGTAC  1018