BAC Information

Click to search

BAC

Clone NameB6Ng01-261N04
Chromosome10 (Build37)
Map Location 54,969,410 - 55,119,987
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041898, LOC382460
Downstream geneLOC100041927, D630037F22Rik, 1700060H10Rik, EG629732, Gja1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-261N04.bB6Ng01-261N04.g
ACCGA066397GA066398
length1,1331,117
definitionB6Ng01-261N04.b B6Ng01-261N04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,969,410 - 54,970,552)(55,118,853 - 55,119,987)
sequence
gaattcaaactttattcgtggtttggacatttgtgacatcacaaaacaaa
caaacaaaaaacccaaactaataagcaacaacaaacccaaaaacctaaag
agaggaatcaaaacaactatatactaaagtttaatacaggtacctataat
gccatttataacaggaggacttatccaacattacctgagcaattccttag
aataatataaatgaggaacagctaaggtgacccaattagtgacctggacc
caatgttgtggtggctaaagctagccctgactcagtgatgacaattcata
atatattgttctatactatactatactatatgtacacacacacacacaca
cacacacatatatatagcaattggattaattttcacagtagcagcaaaat
ataagcatagaaatgataattttatggaagggagatagtgaataaaggaa
gtataaatatgctagggtttcagaaaactgcgtattgtcccaaaccttga
ggctcgtagaaaattacttgtgatgccatttatatcatgctgatctgcat
cttaatgtatcagatggacaatgagaaatttacaaatattttgagccttg
acagtatatacatacatatcgacaattttacaatattacagttttacaag
aggttgctcctggagaaaattggttcaataagagctacatagtttattat
tggccttaattaaaatgtttaatatgtagaaggaggtatcaagtatcagt
tttaattcggtaccttggttatagtttgctaatttcttgatgagctgacc
acaggaatgtgtgacctctaaagtgggatttcatgaataatttggtggtt
gtgagttttttttggggtaggcaagtaaaaatgaagaaaccagagtcagt
ttaagaaaagacccaaataaagaaataggaagaaaagaggaaagaggaaa
ataaaatacaagacaccatgaaaactaagaaaaatgtcagaaatgatgaa
aactctaaaacatgaatataagtcttgacgtaatgtatttcttttttttt
taatggtattttatttaacattcaatgtaatctccttcaaggtctccctc
caaaaccccctacctaatctctcctccccctgc

gaattctgaatcacagtgtatggtattcctgataatatgacatgcatttg
atcagcgctggcttaccctgtcattactgaacatgtttggttttattgat
tcataactacttaaaatgtttaaattagaaaaaggaaggcactttgttac
tagtaggtgcttcaacttagaataaatattctgtactaaggaaaatttgg
actcaatgttgccatcttctgatatttttttagaaaaaaaatagaaactg
agattatatcaaaatttgtaatttataagtattgccagagtcaaatatta
tttataaaattaggtactaatcttaaagatgcctatatgtgcaacacaaa
tcagtttaggtgcttcttggacattctaacattctatacataggggagag
tatcaaagatatatttttagtcccaaaagaaaaagaaaaaggcaaaatct
tcctttctactgtccagagataatacttaggacctgagagcttctatgtc
agtcatttgtcattatatttgtgataatttagatgtattattcctgagct
caaattttaatttaagcagctattttgagtacagagacatggttagacac
ataaacagggcactaatgcgtgtgcgcgcgcgcacacacacacacacaaa
cacacacacaccacctttataaatattaaagtactattttcaacatggga
aattgtaaatcagatatataaaagtgaaaggaggataaaatataccaaca
cttcagtgaacataagaaaaatgaattatggatgccattatatatcattc
atgtttaaaagaacctttgtaacatgaatattcagtctacaaagccttgt
tataaatcagccatcatcagtgagagatttatcttactttcctgtgctac
aataactcagtgttttatggaaagaaaaataaagagtacatttgtaaatt
cattaaaatttaatatatctaggaaatacaattgactggaaactgccaaa
tatctatgttaatctcacatgagatatttattgcttctttgtaaaagaaa
taagatgtagttacaacagataaacgtgctgtgctagggtacttgtttac
aggttccaagaaaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_54969410_54970552
seq2: B6Ng01-261N04.b_45_1177

seq1  GAATTCAAACTTTATTCGTGGTTTGGACATTTGTGACATCACAAAACAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTTTATTCGTGGTTTGGACATTTGTGACATCACAAAACAAA  50

seq1  CAAACAAAAAACCCAAACTAATAAGCAACAACAAACCCAAAAACCTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAAAACCCAAACTAATAAGCAACAACAAACCCAAAAACCTAAAG  100

seq1  AGAGGAATCAAAACAACTATATACTAAAGTTTAATACAGGTACCTATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAATCAAAACAACTATATACTAAAGTTTAATACAGGTACCTATAAT  150

seq1  GCCATTTATAACAGGAGGACTTATCCAACATTACCTGAGCAATTCCTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTATAACAGGAGGACTTATCCAACATTACCTGAGCAATTCCTTAG  200

seq1  AATAATATAAATGAGGAACAGCTAAGGTGACCCAATTAGTGACCTGGACC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATAAATGAGGAACAGCTAAGGTGACCCAATTAGTGACCTGGACC  250

seq1  CAATGTTGTGGTGGCTAAAGCTAGCCCTGACTCAGTGATGACAATTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTTGTGGTGGCTAAAGCTAGCCCTGACTCAGTGATGACAATTCATA  300

seq1  ATATATTGTTCTATACTATACTATACTATATGTACACACACACACACACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTGTTCTATACTATACTATACTATATGTACACACACACACACACA  350

seq1  CACACACATATATATAGCAATTGGATTAATTTTCACAGTAGCAGCAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATATATATAGCAATTGGATTAATTTTCACAGTAGCAGCAAAAT  400

seq1  ATAAGCATAGAAATGATAATTTTATGGAAGGGAGATAGTGAATAAAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGCATAGAAATGATAATTTTATGGAAGGGAGATAGTGAATAAAGGAA  450

seq1  GTATAAATATGCTAGGGTTTCAGAAAACTGCGTATTGTCCCAAACCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAATATGCTAGGGTTTCAGAAAACTGCGTATTGTCCCAAACCTTGA  500

seq1  GGCTCGTAGAAAATTACTTGTGATGCCATTTATATCATGCTGATCTGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGTAGAAAATTACTTGTGATGCCATTTATATCATGCTGATCTGCAT  550

seq1  CTTAATGTATCAGATGGACAATGAGAAATTTACAAATATTTTGAGCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATGTATCAGATGGACAATGAGAAATTTACAAATATTTTGAGCCTTG  600

seq1  ACAGTATATACATACATATCGACAATTTTACAATATTACAGTTTTACAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATATACATACATATCGACAATTTTACAATATTACAGTTTTACAAG  650

seq1  AGGTTGCTCCTGGAGAAAATTGGTTCAATAAGAGCTACATAGTTTATTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGCTCCTGGAGAAAATTGGTTCAATAAGAGCTACATAGTTTATTAT  700

seq1  TGGCCTTAATTAAAATGTTTAATATGTAGAAGGAGGTATCAAGTATCAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTAATTAAAATGTTTAATATGTAGAAGGAGGTATCAAGTATCAGT  750

seq1  TTTAATTCGGTACCTTGGTTATAGTTTGCTAATTTCTTGATGAGCTGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCGGTACCTTGGTTATAGTTTGCTAATTTCTTGATGAGCTGACC  800

seq1  ACAGGAATGTGTGACCTCTAAAGTGGGATTTCATGAATAATGT-GTGGTT  849
      ||||||||||||||||||||||||||||||||||||||||| | ||||||
seq2  ACAGGAATGTGTGACCTCTAAAGTGGGATTTCATGAATAATTTGGTGGTT  850

seq1  GTTAGTGTTTTTT-GGGTAGGCAAGTAAAAATG-AGAAACCAGAGTCAG-  896
      || ||| |||||| ||||||||||||||||||| ||||||||||||||| 
seq2  GTGAGTTTTTTTTGGGGTAGGCAAGTAAAAATGAAGAAACCAGAGTCAGT  900

seq1  TTAAGAAAAGACCAAAATAAAGAAATAGGAAGAAAAGAGGAAAGAGGAAA  946
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAAGACCCAAATAAAGAAATAGGAAGAAAAGAGGAAAGAGGAAA  950

seq1  ATAAAATACAAAGACAACCATGAAAACTAAGAAAAATGTCAGGAAATGAT  996
      ||||||||| ||||| ||||||||||||||||||||||||| ||||||| 
seq2  ATAAAATAC-AAGAC-ACCATGAAAACTAAGAAAAATGTCA-GAAATGA-  996

seq1  TGAAAACTCTAAAAACATGAATATTAAGTCTTGACCGTTAATGTATTTTC  1046
      |||||||||| |||||||||||| |||||||||||   ||||||| ||||
seq2  TGAAAACTCT-AAAACATGAATA-TAAGTCTTGAC--GTAATGTA-TTTC  1041

seq1  TTTTTTTTTTAATGGGTATTTTATTTACATTTCAAATGTTATCTCCTTTC  1096
      ||||||||||||| |||||||||||||   ||| ||||| |||||| |||
seq2  TTTTTTTTTTAAT-GGTATTTTATTTAACATTC-AATGTAATCTCC-TTC  1088

seq1  CAGGTCTCCCCTCCAAAAACCCCCTACCCTATCTCTCCTCCCCCTGC  1143
       |||||| |||||| |||||||||||||  |||||||||||||||||
seq2  AAGGTCT-CCCTCC-AAAACCCCCTACCTAATCTCTCCTCCCCCTGC  1133


seq1: chr10_55118853_55119987
seq2: B6Ng01-261N04.g_62_1178 (reverse)

seq1  TCTTTTTCTTTGAA-CTGTAAAAACAGTAACCCTAGCACAGCACCGTTTT  49
      |||||||||| ||| ||||||| | ||| |||||||||||||||   |||
seq2  TCTTTTTCTTGGAACCTGTAAACA-AGT-ACCCTAGCACAGCAC--GTTT  46

seq1  ATCTGTTGTAAACTACATCTTTATTTCTTTTTAACAAAGAACCAATAAAT  99
      ||||||||| ||||||||| |||||||||||  |||||||| ||||||| 
seq2  ATCTGTTGT-AACTACATC-TTATTTCTTTT--ACAAAGAAGCAATAAA-  91

seq1  TATCTCATGGTGGAAGAATTAAACATTAGATATTTTGGCAGTTTCCAGTC  149
      |||||||| |||  |||  | |||| |||||| |||||||||||||||||
seq2  TATCTCAT-GTG--AGA--TTAACA-TAGATA-TTTGGCAGTTTCCAGTC  134

seq1  AATTGGTATTTTCCTAGATAATATTAAATTTTAATGAATTTACAAATGTA  199
      |||| ||| |||||||||| ||||||||||||||||||||||||||||||
seq2  AATT-GTA-TTTCCTAGAT-ATATTAAATTTTAATGAATTTACAAATGTA  181

seq1  CTCTTTATTTTTCTTTCCATAAAACACTGAGTTATTGTAGCACAGGAAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTATTTTTCTTTCCATAAAACACTGAGTTATTGTAGCACAGGAAAG  231

seq1  TAAGATAAATCTCTCACTGATGATGGCTGATTTATAACAAGGCTTTGTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGATAAATCTCTCACTGATGATGGCTGATTTATAACAAGGCTTTGTAG  281

seq1  ACTGAATATTCATGTTACAAAGGTTCTTTTAAACATGAATGATATATAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATATTCATGTTACAAAGGTTCTTTTAAACATGAATGATATATAAT  331

seq1  GGCATCCATAATTCATTTTTCTTATGTTCACTGAAGTGTTGGTATATTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCCATAATTCATTTTTCTTATGTTCACTGAAGTGTTGGTATATTTT  381

seq1  ATCCTCCTTTCACTTTTATATATCTGATTTACAATTTCCCATGTTGAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCCTTTCACTTTTATATATCTGATTTACAATTTCCCATGTTGAAAA  431

seq1  TAGTACTTTAATATTTATAAAGGTGGTGTGTGTGTGTTTGTGTGTGTGTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACTTTAATATTTATAAAGGTGGTGTGTGTGTGTTTGTGTGTGTGTG  481

seq1  TGTGCGCGCGCGCACACGCATTAGTGCCCTGTTTATGTGTCTAACCATGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCGCGCGCGCACACGCATTAGTGCCCTGTTTATGTGTCTAACCATGT  531

seq1  CTCTGTACTCAAAATAGCTGCTTAAATTAAAATTTGAGCTCAGGAATAAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTACTCAAAATAGCTGCTTAAATTAAAATTTGAGCTCAGGAATAAT  581

seq1  ACATCTAAATTATCACAAATATAATGACAAATGACTGACATAGAAGCTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTAAATTATCACAAATATAATGACAAATGACTGACATAGAAGCTCT  631

seq1  CAGGTCCTAAGTATTATCTCTGGACAGTAGAAAGGAAGATTTTGCCTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTAAGTATTATCTCTGGACAGTAGAAAGGAAGATTTTGCCTTTT  681

seq1  TCTTTTTCTTTTGGGACTAAAAATATATCTTTGATACTCTCCCCTATGTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTCTTTTGGGACTAAAAATATATCTTTGATACTCTCCCCTATGTA  731

seq1  TAGAATGTTAGAATGTCCAAGAAGCACCTAAACTGATTTGTGTTGCACAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGTTAGAATGTCCAAGAAGCACCTAAACTGATTTGTGTTGCACAT  781

seq1  ATAGGCATCTTTAAGATTAGTACCTAATTTTATAAATAATATTTGACTCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCATCTTTAAGATTAGTACCTAATTTTATAAATAATATTTGACTCT  831

seq1  GGCAATACTTATAAATTACAAATTTTGATATAATCTCAGTTTCTATTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATACTTATAAATTACAAATTTTGATATAATCTCAGTTTCTATTTTT  881

seq1  TTTCTAAAAAAATATCAGAAGATGGCAACATTGAGTCCAAATTTTCCTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAAAAATATCAGAAGATGGCAACATTGAGTCCAAATTTTCCTTA  931

seq1  GTACAGAATATTTATTCTAAGTTGAAGCACCTACTAGTAACAAAGTGCCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAATATTTATTCTAAGTTGAAGCACCTACTAGTAACAAAGTGCCT  981

seq1  TCCTTTTTCTAATTTAAACATTTTAAGTAGTTATGAATCAATAAAACCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTTCTAATTTAAACATTTTAAGTAGTTATGAATCAATAAAACCAA  1031

seq1  ACATGTTCAGTAATGACAGGGTAAGCCAGCGCTGATCAAATGCATGTCAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTTCAGTAATGACAGGGTAAGCCAGCGCTGATCAAATGCATGTCAT  1081

seq1  ATTATCAGGAATACCATACACTGTGATTCAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||
seq2  ATTATCAGGAATACCATACACTGTGATTCAGAATTC  1117


| Home | SequenceCutter | Blast | Download |