BAC Information

Click to search

BAC

Clone NameB6Ng01-262D16
Chromosome10 (Build37)
Map Location 65,616,941 - 65,673,277
singlet/doubletdoublet
Overlap gene4930407I19Rik
Upstream geneLOC665206, LOC216036, 1700023F02Rik
Downstream geneReep3, Jmjd1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262D16.bB6Ng01-262D16.g
ACCGA066699GA066700
length1,0831,124
definitionB6Ng01-262D16.b B6Ng01-262D16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,616,941 - 65,617,669)(65,672,140 - 65,673,277)
sequence
gaattctataataaagccagttggcccttggctttttttggttgggaagt
ttttaatgacttctatatttgtagtgtgtatggatttgtttaaatagttt
gcctactcttgacttagcttttggacatggtatctgtttagaattcatcc
atttcatccagattttccaatgagtatttacttttgtagtaggagcaaat
ggttctttaaatttcttcagtttcagtttttatggttcactttttatttc
taattttgttaatttggatactatctctgtgccatttaattaatttgtct
agggctttatctatcttgatgattttctcaaagagccagcttttagtttt
gttgattctttgtatctttctctttgtttcttgttggttgatttccaccc
taagtttgaatatttcctgccttctactattcttttgtttgtttgcttcc
ttttgttttagagctctcagatgtgctgttaagttgctagtgtaggatct
ctccaatttctttaccaaggcacttagtgctatgattttttttttcttag
aactgctttcattgtggcccataagtctgggtatgctgtgtcatcatttt
cactgaattccaggaagtctttaatttctttatttatttcttctctgacc
aagtaatcattgagtagagagttgttcagtttctatgggttgtttttgtt
gttattgaagtctagtcttagttcatggtgatctgataggatgcgtggta
ttatgcactcttcttgtatctgttgaggcttattctgtgatagattattt
ggtcaactttggggaagataccatgatgtgctgagaagaagatacattct
tttatttaaaaacataaaaaaatgtagattaaaatttttaaatggaaaaa
atgaaatacattttatagcatccaaatagaaatgataacatttgatttta
atatgatacaagattgtttcatttcttctatagatttatttaagtcaata
ctttaacttgtcaatttcatataaaatatttaaataagagtatatataca
tatgctctctatctttttaaactactctctata

gaattctctccaagccgtttgactatacacctagcatcatgtaaaaaaaa
ttctgactaaattctaatgcagtgggagccagctggaaaagactaatgga
tgacataaaatattagatgcagaagttttgatatatgaagaaaatgacag
ctgcctacttccatgcttccaattgtttctttccaaacaatagaaggaaa
aaacaacacacaaaagtatgcctttctcataatttaaatatcatccaaac
tttaataaaattttaagtaaaagaaaacaagaacaataagatttctatgg
atagttcccctgtcagaatccatggaaatggcagacatagctaactataa
aacattaccatcagtcagaaattaaagattaaatatggaaatgggtgaaa
tcaggaatacactttagaaattcactgaaatttaggaagacaaagaaaga
aaactgcaaaattatttcagataagaaagttcccagagagctgggcgtgg
tggcgcacacctttaatcccaatactcaggaggcagaggcaagcagattt
ctgagtcgccagcctggtctacaaagtgagttccaggacagccagggcta
tacagaaaaccctatctcgaaaaacaaaaacaaaaacaaacaaacaaaca
aaaagttcccagaaggaggccaactctgtaagtaagaatgctgaccacca
agcgtgaacatttgagttaaatccctggtacttacatcaagaagagaatg
gattctgaaattgacctccttgtgtgcatagtaactctgctgcatatatg
ggtttatatatgcaggtacatatgcataatatctatctatctatctatct
atctatctgtctgtctgtctgtctgtctgtctgtctgtctgtctctctgt
ctatctatctatctatctatctatctatctatctatctatctatctatct
atctatctcctatctatctatataggaacaaatacaacatagcctagtga
tagtgatgctatgagaattttactaatatatactgtatacatgcagagac
actgtgctctagacaggatgttctcacgatttaaatatggaaagcatcct
cctaccaacccatgaggaggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_65616941_65617669
seq2: B6Ng01-262D16.b_404_1126

seq1  TGTATCTTTCTCTTTGTTTCTTGTTGGTTGATTTCCACCCTAAGTTTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTTTCTCTTTGTTTCTTGTTGGTTGATTTCCACCCTAAGTTTGAA  50

seq1  TATTTCCTGCCTTCTACTATTCTTTTGTTTGTTTGCTTCCTTTTGTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCCTGCCTTCTACTATTCTTTTGTTTGTTTGCTTCCTTTTGTTTTA  100

seq1  GAGCTCTCAGATGTGCTGTTAAGTTGCTAGTGTAGGATCTCTCCAATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTCAGATGTGCTGTTAAGTTGCTAGTGTAGGATCTCTCCAATTTC  150

seq1  TTTACCAAGGCACTTAGTGCTATGATTTTTTTTTTCTTAGAACTGCTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAAGGCACTTAGTGCTATGATTTTTTTTTTCTTAGAACTGCTTTC  200

seq1  ATTGTGGCCCATAAGTCTGGGTATGCTGTGTCATCATTTTCACTGAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGGCCCATAAGTCTGGGTATGCTGTGTCATCATTTTCACTGAATTC  250

seq1  CAGGAAGTCTTTAATTTCTTTATTTATTTCTTCTCTGACCAAGTAATCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAGTCTTTAATTTCTTTATTTATTTCTTCTCTGACCAAGTAATCAT  300

seq1  TGAGTAGAGAGTTGTTCAGTTTCTATGGGTTGTTTTTGTTGTTATTGAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAGAGAGTTGTTCAGTTTCTATGGGTTGTTTTTGTTGTTATTGAAG  350

seq1  TCTAGTCTTAGTTCATGGTGATCTGATAGGATGCGTGGTATTATGCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTCTTAGTTCATGGTGATCTGATAGGATGCGTGGTATTATGCACTC  400

seq1  TTCTTGTATCTGTTGAGGCTTATTCTGTGATAGATTATTTGGTCAACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTATCTGTTGAGGCTTATTCTGTGATAGATTATTTGGTCAACTTT  450

seq1  GGGGAAGATACCATGATGTGCTGAGAAGAAGATACATTCTTTTATTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAGATACCATGATGTGCTGAGAAGAAGATACATTCTTTTATTTAAA  500

seq1  AACATAAAAAAATGTAGATTAAAATTTTTAAATGGAAAAAATGAAATACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAAAAAATGTAGATTAAAATTTTTAAATGGAAAAAATGAAATACA  550

seq1  TTTTATAGCATCCAAATAGAAATGATAACATTTGATTTTAATATGATACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATAGCATCCAAATAGAAATGATAACATTTGATTTTAATATGATACA  600

seq1  AGATTGTTTCATTTCTTCTATAGATTTATTTAAGGTCAAATAACTTTTAA  650
      ||||||||||||||||||||||||||||||||| ||| ||||   |||||
seq2  AGATTGTTTCATTTCTTCTATAGATTTATTTAA-GTC-AATA--CTTTAA  646

seq1  CTTGTCAATTTCATAT-AAATATTTAAATAAGAAGTATATATACATATGC  699
      |||||||||||||||| ||||||||||||||| |||||||||||||||||
seq2  CTTGTCAATTTCATATAAAATATTTAAATAAG-AGTATATATACATATGC  695

seq1  TCTCTATCTTTTTAAACTTACTCTTCTATA  729
      ||||||||||||||||| ||||| ||||||
seq2  TCTCTATCTTTTTAAAC-TACTC-TCTATA  723


seq1: chr10_65672140_65673277
seq2: B6Ng01-262D16.g_64_1187 (reverse)

seq1  CCCACCTCCTCATGGTGTTGGTAGGAAGGATGGGTTTTCAATATTTAAAT  50
      ||||||||||||||| ||||||||| |||||  | |||| ||||||||||
seq2  CCCACCTCCTCATGG-GTTGGTAGG-AGGAT--GCTTTCCATATTTAAAT  46

seq1  CTGTGAGGAACATTCTGTCTAGAGCACAGTTGTTCTTCTGCATGTATACA  100
      | |||| |||||| ||||||||||||||| |||   ||||||||||||||
seq2  C-GTGA-GAACATCCTGTCTAGAGCACAG-TGT--CTCTGCATGTATACA  91

seq1  GTATATATTAGTAAAAATTTCTCAATAGCCATCCAACTTATCACTAGGCT  150
      ||||||||||||||||  ||||| |||| ||||  || ||||||||||||
seq2  GTATATATTAGTAAAA--TTCTC-ATAG-CATC--AC-TATCACTAGGCT  134

seq1  ATGTTGTATTTGTTCCTATTAATAGATAGATAGG----AGATAGATAGAT  196
      |||||||||||||||||||  |||||||||||||    ||||||||||||
seq2  ATGTTGTATTTGTTCCTAT--ATAGATAGATAGGAGATAGATAGATAGAT  182

seq1  AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGAGAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGACAGAGAG  232

seq1  ACAGACAGACAGACAGACAGACAGACAGACAGACAGATAGATAGATAGAT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGACAGACAGACAGACAGACAGACAGACAGATAGATAGATAGAT  282

seq1  AGATAGATAGATATTATGCATATGTACCTGCATATATAAACCCATATATG  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGATAGATATTATGCATATGTACCTGCATATATAAACCCATATATG  332

seq1  CAGCAGAGTTACTATGCACACAAGGAGGTCAATTTCAGAATCCATTCTCT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGTTACTATGCACACAAGGAGGTCAATTTCAGAATCCATTCTCT  382

seq1  TCTTGATGTAAGTACCAGGGATTTAACTCAAATGTTCACGCTTGGTGGTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGATGTAAGTACCAGGGATTTAACTCAAATGTTCACGCTTGGTGGTC  432

seq1  AGCATTCTTACTTACAGAGTTGGCCTCCTTCTGGGAACTTTTTGTTTGTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTCTTACTTACAGAGTTGGCCTCCTTCTGGGAACTTTTTGTTTGTT  482

seq1  TGTTTGTTTTTGTTTTTGTTTTTCGAGATAGGGTTTTCTGTATAGCCCTG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTTGTTTTTGTTTTTCGAGATAGGGTTTTCTGTATAGCCCTG  532

seq1  GCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCGACTCAGAAATCTGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCGACTCAGAAATCTGC  582

seq1  TTGCCTCTGCCTCCTGAGTATTGGGATTAAAGGTGTGCGCCACCACGCCC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTCTGCCTCCTGAGTATTGGGATTAAAGGTGTGCGCCACCACGCCC  632

seq1  AGCTCTCTGGGAACTTTCTTATCTGAAATAATTTTGCAGTTTTCTTTCTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTCTGGGAACTTTCTTATCTGAAATAATTTTGCAGTTTTCTTTCTT  682

seq1  TGTCTTCCTAAATTTCAGTGAATTTCTAAAGTGTATTCCTGATTTCACCC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCCTAAATTTCAGTGAATTTCTAAAGTGTATTCCTGATTTCACCC  732

seq1  ATTTCCATATTTAATCTTTAATTTCTGACTGATGGTAATGTTTTATAGTT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCCATATTTAATCTTTAATTTCTGACTGATGGTAATGTTTTATAGTT  782

seq1  AGCTATGTCTGCCATTTCCATGGATTCTGACAGGGGAACTATCCATAGAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGTCTGCCATTTCCATGGATTCTGACAGGGGAACTATCCATAGAA  832

seq1  ATCTTATTGTTCTTGTTTTCTTTTACTTAAAATTTTATTAAAGTTTGGAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATTGTTCTTGTTTTCTTTTACTTAAAATTTTATTAAAGTTTGGAT  882

seq1  GATATTTAAATTATGAGAAAGGCATACTTTTGTGTGTTGTTTTTTCCTTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTTAAATTATGAGAAAGGCATACTTTTGTGTGTTGTTTTTTCCTTC  932

seq1  TATTGTTTGGAAAGAAACAATTGGAAGCATGGAAGTAGGCAGCTGTCATT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTGGAAAGAAACAATTGGAAGCATGGAAGTAGGCAGCTGTCATT  982

seq1  TTCTTCATATATCAAAACTTCTGCATCTAATATTTTATGTCATCCATTAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCATATATCAAAACTTCTGCATCTAATATTTTATGTCATCCATTAG  1032

seq1  TCTTTTCCAGCTGGCTCCCACTGCATTAGAATTTAGTCAGAATTTTTTTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCAGCTGGCTCCCACTGCATTAGAATTTAGTCAGAATTTTTTTT  1082

seq1  ACATGATGCTAGGTGTATAGTCAAACGGCTTGGAGAGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATGCTAGGTGTATAGTCAAACGGCTTGGAGAGAATTC  1124


| Home | SequenceCutter | Blast | Download |