BAC Information

Click to search

BAC

Clone NameB6Ng01-262J01
Chromosome10 (Build37)
Map Location 62,584,676 - 62,729,146
singlet/doubletdoublet
Overlap geneMypn, 1700120B22Rik, Herc4
Upstream geneNeurog3, Tspan15, Tacr2, Hk1, 2210417K05Rik, Hkdc1, Supv3l1, Vps26a, Srgn, 2510003E04Rik, Ddx21, Ddx50, Stox1, Ccar1, Cxxc6, Slc25a16, Dna2l, Rufy2, Hnrph3, 3110049J23Rik, Pbld, Atoh7
Downstream geneSirt1, Dnajc12, LOC665182, EG631906, Ctnna3, Lrrtm3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-262J01.bB6Ng01-262J01.g
ACCGA066947GA066948
length1,1161,047
definitionB6Ng01-262J01.b B6Ng01-262J01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,584,676 - 62,585,805)(62,728,127 - 62,729,146)
sequence
gaattctgcccggttttgttggtagccacgcacgtgtaggtccctgcgtc
tcgttgggtgagcgggtcgatgagcagagagtggactcccgtctctctga
ccagcatcttgtgggaggcgtcgggtagcacaggttgcccattgagtagc
catgtcagctccgggggtggtaagccactcacctaacagatgacagaaca
gccaacgtggacgacacagacaggcagattcatccggtgactgaattctt
tatccttattgacaccaaatatagagcaaaggaaaacacggaagggtggg
gactctgctgcagccttgaaggggggtctgaatgaatggtactgactttg
aacggtctcagccccatttcagtcatgactgagccatgtgattacatccc
agagtgatgatagcgacaaatagaaaaacacaggctgcggcatcagtaaa
agagatgacttcggcttagacaccagagtcagaaaaggttctcaaatcaa
aggttaaatcaccattctcaaattttgttcatggactatcaaaaaaaacc
caaaaacccaaaaaacttgagaactaattataatattaaaactgaatttc
cgggaagaggagccaggcgctgatgttttttaaagtctagagaggcaggg
gagcatacaacctgaatattatttaggtggcaactgagggatgagagccg
cacacagaaaggggctctctgcacaagcctgctctccagcctgcactgac
tgcgcctacatttcccataacaccctgcacggtcgcctgacacagaagtg
atgacgtcagagttcattaccctgagagacctttgccttgccaatgtgaa
acctcatttcagattgggaaattagaatgcggaatgacaaaaggtaacag
aggtggcttagtgtgagggagataaaaaaaagagtttctcccttcctgtg
accaagacacaagatataacttctggctcatagtaataaagggttcaagg
gacgataatagaaagtccacagttaaccttgttattgtctcaaaatgaga
atcaactgaccatatgtccacaataaattgttggctttaaaaggtttatg
ccttccatacttgtat
gaattcaactcctggaactcacgacggagaagcactatgtcctgcacgtt
gttctgacttccacacatgacactgctgcatatgcacacccacatataca
catacatgcaaaagaaatgctaaaggtatttaaaataaaatcagagatga
aaagggaggcattacaagtgatacaaaattacaaaggacattagagacta
ttacaaacaactctacacaataaacctcatcacccagaagaaacaagtca
atttctgaacataagcgctttgtcaaaacagaaccatcaagaaactcaac
agacctgtaacaggagcaagatagaatcaatactaatgtgtccatggaaa
agaaagcacagacctaagagcttctctgctaaattctaaaaaacatttac
agaactgatactgattcttaaaaaagtctttcttactgactcctatttca
aaaaactcagagaaatgaatccatctactctgatactaatcacaagtaag
gacacaacaaaaaaggaagctagaggctgaacacagaggtataaaccggg
catattgcatgaggcagtggtagcacatacctctaattctggcagaggca
gaggcaggcagatctctgtgagtttgaggccaaccttgtctagttctagg
atagtcagggctacacagagaagccctgtttcacaaaagcaaggggggca
tatataaaaagtctttattatgttgagataagaaaagaaattcaacaaag
ggctggggagatggctcagtggttgagagcacttgctgctcttgcagaga
gacccatatttggttcccagcacccacatgtcagcacacaaccatctgtt
gctctagctcagtggttctcaacgcttagggatggtcaaacaaccctttc
acagggctacatatccaatacttacactgcaattcataacagtagcaaaa
tcacagttataaagcaataaaaataattttatagccgggcgttggtagcg
catgccttatcccagaactcagagcagagcagcgatttctgagttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_62584676_62585805
seq2: B6Ng01-262J01.b_43_1158

seq1  GAATTCTGCCCGGTTTTGTTGGTAGCCACGCACGTGTAGGTCCCTGCGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCCCGGTTTTGTTGGTAGCCACGCACGTGTAGGTCCCTGCGTC  50

seq1  TCGTTGGGTGAGCGGGTCGATGAGCAGAGAGTGGACTCCCGTCTCTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTGGGTGAGCGGGTCGATGAGCAGAGAGTGGACTCCCGTCTCTCTGA  100

seq1  CCAGCATCTTGTGGGAGGCGTCGGGTAGCACAGGTTGCCCATTGAGTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCTTGTGGGAGGCGTCGGGTAGCACAGGTTGCCCATTGAGTAGC  150

seq1  CATGTCAGCTCCGGGGGTGGTAAGCCACTCACCTAACAGATGACAGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCAGCTCCGGGGGTGGTAAGCCACTCACCTAACAGATGACAGAACA  200

seq1  GCCAACGTGGACGACACAGACAGGCAGATTCATCCGGTGACTGAATTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACGTGGACGACACAGACAGGCAGATTCATCCGGTGACTGAATTCTT  250

seq1  TATCCTTATTGACACCAAATATAGAGCAAAGGAAAACACGGAAGGGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTTATTGACACCAAATATAGAGCAAAGGAAAACACGGAAGGGTGGG  300

seq1  GACTCTGCTGCAGCCTTGAAGGGGGGTCTGAATGAATGGTACTGACTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCTGCTGCAGCCTTGAAGGGGGGTCTGAATGAATGGTACTGACTTTG  350

seq1  AACGGTCTCAGCCCCATTTCAGTCATGACTGAGCCATGTGATTACATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTCTCAGCCCCATTTCAGTCATGACTGAGCCATGTGATTACATCCC  400

seq1  AGAGTGATGATAGCGACAAATAGAAAAACACAGGCTGCGGCATCAGTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGATGATAGCGACAAATAGAAAAACACAGGCTGCGGCATCAGTAAA  450

seq1  AGAGATGACTTCGGCTTAGACACCAGAGTCAGAAAAGGTTCTCAAATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGACTTCGGCTTAGACACCAGAGTCAGAAAAGGTTCTCAAATCAA  500

seq1  AGGTTAAATCACCATTCTCAAATTTTGTTCATGGACTATCAAAAAAAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTAAATCACCATTCTCAAATTTTGTTCATGGACTATCAAAAAAAACC  550

seq1  CAAAAACCCAAAAAACTTGAGAACTAATTATAATATTAAAACTGAATTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACCCAAAAAACTTGAGAACTAATTATAATATTAAAACTGAATTTC  600

seq1  CGGGAAGAGGAGCCAGGCGCTGATGTTTTTTAAAGTCTAGAGAGGCAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAGAGGAGCCAGGCGCTGATGTTTTTTAAAGTCTAGAGAGGCAGGG  650

seq1  GAGCATACAACCTGAATATTATTTAGGTGGCAACTGAGGGATGAGAGCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATACAACCTGAATATTATTTAGGTGGCAACTGAGGGATGAGAGCCG  700

seq1  CACACAGAAAGGGGCTCTCTGCACAAGCCTGCTCTCCAGCCTGCACTGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGAAAGGGGCTCTCTGCACAAGCCTGCTCTCCAGCCTGCACTGAC  750

seq1  TGCGCCTACATTTCCCATAACACCCTGCACGGTCGCCTGACACAGAAGTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCCTACATTTCCCATAACACCCTGCACGGTCGCCTGACACAGAAGTG  800

seq1  ATGACGTCAGAGTTCATTACCCTGAGAGACCTTTGCCTTGCCAATGTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGTCAGAGTTCATTACCCTGAGAGACCTTTGCCTTGCCAATGTGAA  850

seq1  ACCTCATTTCAGATTGGGAAATTAGAATGCGGAATGACAAAAGGTAACAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATTTCAGATTGGGAAATTAGAATGCGGAATGACAAAAGGTAACAG  900

seq1  AGGTGGCTTAGTGTGAGGAAAAAAAAAAAAAAAAAGAAGTTTCTCCCTTC  950
      |||||||||||||||||| | | ||||||||      |||||||||||| 
seq2  AGGTGGCTTAGTGTGAGGGAGATAAAAAAAA-----GAGTTTCTCCCTT-  944

seq1  CCTGTGACCAAAGACACAAGATTATAACTTCTGGCTTCATAGTAATAAAG  1000
      ||||||||| ||||||||||| ||||||||||||| ||||||||||||||
seq2  CCTGTGACC-AAGACACAAGA-TATAACTTCTGGC-TCATAGTAATAAAG  991

seq1  GG-TCCAGGGACGAT-ATAGAAAAGTCCACAAGTTAACCTTTGGTTATTG  1048
      || || ||||||||| |||| ||||||||| ||||||||||  |||||||
seq2  GGTTCAAGGGACGATAATAG-AAAGTCCAC-AGTTAACCTT--GTTATTG  1037

seq1  TCTCAAAATGAAGAATCAACTTGACATAATGCCCACATAAAATGGTTTTG  1098
      |||||||||| ||||||||| ||||   ||| |||||  |||| | || |
seq2  TCTCAAAATG-AGAATCAAC-TGACCATATGTCCACAATAAATTG-TTGG  1084

seq1  CTTTAAAAGTTTTATG-CTTCCATACTTTGTAT  1130
      ||||||||| |||||| ||||||||| ||||||
seq2  CTTTAAAAGGTTTATGCCTTCCATAC-TTGTAT  1116

seq1: chr10_62728127_62729146
seq2: B6Ng01-262J01.g_105_1116 (reverse)

seq1  TGAACTCAGAAATCCGCCTGCCTCTGCCTCCTGAGTTCTGGGATTAAAGG  50
      ||||||||||||||   ||| ||||||   ||||||||||||||  ||||
seq2  TGAACTCAGAAATC--GCTG-CTCTGC--TCTGAGTTCTGGGAT--AAGG  43

seq1  CATGCGCTACCAACGCCCGGCTATAAAATTATTTTTATTGCTTTATAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCGCTACCAACGCCCGGCTATAAAATTATTTTTATTGCTTTATAACT  93

seq1  GTGATTTTGCTACTGTTATGAATTGCAGTGTAAGTATTGGATATGTAGCC  150
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTGATTTTGCTACTGTTATGAATTGCAGTGTAAGTATTGGATATGTAG-C  142

seq1  CCTGTGAAAGGGTTGTTTGACCATCCCTAAGCGTTGAGAACCACTGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAAAGGGTTGTTTGACCATCCCTAAGCGTTGAGAACCACTGAGCT  192

seq1  AGAGCAACAGATGGTTGTGTGCTGACATGTGGGTGCTGGGAACCAAATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAACAGATGGTTGTGTGCTGACATGTGGGTGCTGGGAACCAAATAT  242

seq1  GGGTCTCTCTGCAAGAGCAGCAAGTGCTCTCAACCACTGAGCCATCTCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTCTCTGCAAGAGCAGCAAGTGCTCTCAACCACTGAGCCATCTCCC  292

seq1  CAGCCCTTTGTTGAATTTCTTTTCTTATCTCAACATAATAAAGACTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTTTGTTGAATTTCTTTTCTTATCTCAACATAATAAAGACTTTTT  342

seq1  ATATATGCCCCCCTTGCTTTTGTGAAACAGGGCTTCTCTGTGTAGCCCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGCCCCCCTTGCTTTTGTGAAACAGGGCTTCTCTGTGTAGCCCTG  392

seq1  ACTATCCTAGAACTAGACAAGGTTGGCCTCAAACTCACAGAGATCTGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCCTAGAACTAGACAAGGTTGGCCTCAAACTCACAGAGATCTGCCT  442

seq1  GCCTCTGCCTCTGCCAGAATTAGAGGTATGTGCTACCACTGCCTCATGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTGCCTCTGCCAGAATTAGAGGTATGTGCTACCACTGCCTCATGCA  492

seq1  ATATGCCCGGTTTATACCTCTGTGTTCAGCCTCTAGCTTCCTTTTTTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCCCGGTTTATACCTCTGTGTTCAGCCTCTAGCTTCCTTTTTTGTT  542

seq1  GTGTCCTTACTTGTGATTAGTATCAGAGTAGATGGATTCATTTCTCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCTTACTTGTGATTAGTATCAGAGTAGATGGATTCATTTCTCTGAG  592

seq1  TTTTTTGAAATAGGAGTCAGTAAGAAAGACTTTTTTAAGAATCAGTATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGAAATAGGAGTCAGTAAGAAAGACTTTTTTAAGAATCAGTATCA  642

seq1  GTTCTGTAAATGTTTTTTAGAATTTAGCAGAGAAGCTCTTAGGTCTGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTGTAAATGTTTTTTAGAATTTAGCAGAGAAGCTCTTAGGTCTGTGC  692

seq1  TTTCTTTTCCATGGACACATTAGTATTGATTCTATCTTGCTCCTGTTACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTCCATGGACACATTAGTATTGATTCTATCTTGCTCCTGTTACA  742

seq1  GGTCTGTTGAGTTTCTTGATGGTTCTGTTTTGACAAAGCGCTTATGTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTTGAGTTTCTTGATGGTTCTGTTTTGACAAAGCGCTTATGTTCA  792

seq1  GAAATTGACTTGTTTCTTCTGGGTGATGAGGTTTATTGTGTAGAGTTGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTGACTTGTTTCTTCTGGGTGATGAGGTTTATTGTGTAGAGTTGTT  842

seq1  TGTAATAGTCTCTAATGTCCTTTGTAATTTTGTATCACTTGTAATGCCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAGTCTCTAATGTCCTTTGTAATTTTGTATCACTTGTAATGCCTC  892

seq1  CCTTTTCATCTCTGATTTTATTTTAAATACCTTTAGCATTTCTTTTGCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCATCTCTGATTTTATTTTAAATACCTTTAGCATTTCTTTTGCAT  942

seq1  GTATGTGTATATGTGGGTGTGCATATGCAGCAGTGTCATGTGTGGAAGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTGTATATGTGGGTGTGCATATGCAGCAGTGTCATGTGTGGAAGTC  992

seq1  AGAACAACGTGCAGGACATA  1020
      ||||||||||||||||||||
seq2  AGAACAACGTGCAGGACATA  1012