BAC Information

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BAC

Clone NameB6Ng01-263B22
Chromosome10 (Build37)
Map Location 49,122,382 - 49,310,925
singlet/doubletdoublet
Overlap geneGrik2
Upstream geneLOC546562, LOC100041689
Downstream geneLOC629652
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-263B22.bB6Ng01-263B22.g
ACCGA067368GA067369
length1,1361,100
definitionB6Ng01-263B22.b B6Ng01-263B22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,122,382 - 49,123,245)(49,309,823 - 49,310,925)
sequence
gaattcatgaaattcctaagcaaatggatggacctggagggcatcatcct
gagtgaggtaacccaatcacaaaggaactcgcacaatatatactcactga
taagtggatattagcccagaaacttaggatacccaagatataagatacaa
tttgctaaacgaatgaaatttaagaagaacgatgaccaaagtgtggacac
tttgccccttcttagaaatgggaacaaaacacccatggaaggagttacag
agacaaaattttgagctgtgacgaaagatggactatctagtgattgccat
atgcagggatccatcccataatcagcttccaaacgctgacaccattgcat
acactagcaagattttgctgaaaggacccaaatatagctgtctcttgtga
gactatgctggggcctagcaaacacagaagtggattatcacagtcagcta
ttggatgggtcacacggcccccaatggaggagctagaaaaattaccaagg
agctaaaggcaactgcaaccctataggtggaaaaacaatatgaactaagc
agtatcccggagctcttgtctctagctgcatatgtatcaaaagatggcct
agtcgtccatcactgcaaagagaggcccattggacttgcaaactttatat
gccccagtatggggaaccccagggccaaaaagggggagtgggtgggtatg
tcggacttttgtgatagcattgaaaaatgttaatgaggaaaatacctgaa
aaaaaaaaagaagctaggatggaaaggatagttatcaggaagagagataa
ctgcttatttactgaacaatttttacagaaagtcgtgacattaggaacaa
atgctctgatgggcaaaaaagcccaggtgtgttattgcctatagtaaagt
tttggactaaaatattgttccattttgattcatatagaaagttacagtat
ttgaaaaaacagcagaggagtcaatattaatttgaagaaggatctcaaag
gctttgatgtgatacagaagagtctggaagaacttagttagaggattaga
aacttccaccaccgccacggtgttagatcacctgcaagttgcagcctgct
ttcatggtggaaagcttgtcaacacagcctaatcta

gaattccaggaatttaaagattatcttccctgtcaacgaagagtattaaa
aggaaccatggctataaagagggaggcggtatttgatagaactggaacta
ttaaaatatagaagaataaacagtgggctttatggaggttggaaagtaga
tttataagtggtaggattcatacagatattcttcaaaatctcaagattct
ttaagtctggttaatagtaaattgcatttttaaaacaattttctgctctg
tgtcacataaatctttgttctgtataacacttatcagtttgcttctaaat
agtggttcccaatgaaaaccattattatgtttacctataagtgtaaactc
tatgctcttcctttgtcttaaaatttgcctaaggctaaatttcaaacttt
tgcagcaagtttattggcagagaagaattcaagacagtctgatattgatc
ctgtaacctggttattagtgaccacacttatgcaggtctacaatgaagaa
ggaggaagaggagaaagtaaaaaaaagaaagaagcagggtaaagagaaat
acaaaatgtacaatttgaatagaaaaagatcaccaggaatttttaagttg
gagacaaagtttgtgttaaaaaagataaggagaagtggaatacagagtag
gattctaagggtcagatactgcctagctaatacagcaagttttgtaagaa
tcggagagtggttggtggcttgatatagttgtgggtctcaggcaagaaag
gaatctggggataaattctgaagaagtcataagcttaaagttaggcagta
atggaaagattttatttaataggatggcgagttaaaaatgccctttagaa
atactggctataatatgtaaaattaagttacaatagccataggaagacag
gaatttgggaaattcaggaaagatacattactacatggaagagtgcagtt
ggggtttagtcagtatctgaaaaatttacagtaatgtactgagatatgat
ggaaactaataccattagcatgagtatgtgttctaggatttttatgctgt
aagatgcacatgatccacaagccaattcttatgaaataaaactctaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_49122382_49123245
seq2: B6Ng01-263B22.b_305_1181

seq1  TTTGAGCTGTGACGAAAGATGGACTATCTAGTGATTGCCATATGCAGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCTGTGACGAAAGATGGACTATCTAGTGATTGCCATATGCAGGGA  50

seq1  TCCATCCCATAATCAGCTTCCAAACGCTGACACCATTGCATACACTAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCCCATAATCAGCTTCCAAACGCTGACACCATTGCATACACTAGCA  100

seq1  AGATTTTGCTGAAAGGACCCAAATATAGCTGTCTCTTGTGAGACTATGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTGCTGAAAGGACCCAAATATAGCTGTCTCTTGTGAGACTATGCT  150

seq1  GGGGCCTAGCAAACACAGAAGTGGATTATCACAGTCAGCTATTGGATGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTAGCAAACACAGAAGTGGATTATCACAGTCAGCTATTGGATGGG  200

seq1  TCACACGGCCCCCAATGGAGGAGCTAGAAAAATTACCAAGGAGCTAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACGGCCCCCAATGGAGGAGCTAGAAAAATTACCAAGGAGCTAAAGG  250

seq1  CAACTGCAACCCTATAGGTGGAAAAACAATATGAACTAAGCAGTATCCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGCAACCCTATAGGTGGAAAAACAATATGAACTAAGCAGTATCCCG  300

seq1  GAGCTCTTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCTTGTCTCTAGCTGCATATGTATCAAAAGATGGCCTAGTCGTCCA  350

seq1  TCACTGCAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGCAAAGAGAGGCCCATTGGACTTGCAAACTTTATATGCCCCAGTA  400

seq1  TGGGGAACCCCAGGGCCAAAAAGGGGGAGTGGGTGGGTATGTCGGACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAACCCCAGGGCCAAAAAGGGGGAGTGGGTGGGTATGTCGGACTTT  450

seq1  TGTGATAGCATTG-AAAATGTTAATGAGGAAAATACCTGAAAAAAAAAAA  499
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGTGATAGCATTGAAAAATGTTAATGAGGAAAATACCTGAAAAAAAAAAA  500

seq1  GAAGCTAGGATGGAAAGGATAGTTATCAGGAAGAGAGATAACTGCTTATT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTAGGATGGAAAGGATAGTTATCAGGAAGAGAGATAACTGCTTATT  550

seq1  TACTGAACAATTTTTACAGAAAGTCGTGACATTAGGAACAAATGCTCTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGAACAATTTTTACAGAAAGTCGTGACATTAGGAACAAATGCTCTGA  600

seq1  TGGGCAAAAA--GCCAGGTGTGTTATTGCCTATAGTAAAGTTTT-GACTA  646
      ||||||||||   ||||||||||||||||||||||||||||||| |||||
seq2  TGGGCAAAAAAGCCCAGGTGTGTTATTGCCTATAGTAAAGTTTTGGACTA  650

seq1  AAATATTGTTCCAATTTGATTCATATAG-AAGTTACAGTATTTGAAAAAA  695
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  AAATATTGTTCCATTTTGATTCATATAGAAAGTTACAGTATTTGAAAAAA  700

seq1  CAGCAGAAGAGTCAATATTAATTTGAAG-AGGACCTCAAAGCCTTTGATG  744
      ||||||| |||||||||||||||||||| |||| ||||||| ||||||||
seq2  CAGCAGAGGAGTCAATATTAATTTGAAGAAGGATCTCAAAGGCTTTGATG  750

seq1  TGATACAAGAGAGTCT-GAAGACTTTAGTTAGAGAATTAGAAACTT-CAC  792
      |||||||  ||||||| |||||  |||||||||| ||||||||||| |||
seq2  TGATACAGAAGAGTCTGGAAGAACTTAGTTAGAGGATTAGAAACTTCCAC  800

seq1  CACCGCAAGGGTGTTAGATCA-CTGGAAG-TGAAG-CTGC-TTCATTGTT  838
      |||||| | |||||||||||| ||| ||| || || |||| ||||| || 
seq2  CACCGCCACGGTGTTAGATCACCTGCAAGTTGCAGCCTGCTTTCATGGTG  850

seq1  GAAAGCTTGT-AACACAGCCTAATCTA  864
      |||||||||| ||||||||||||||||
seq2  GAAAGCTTGTCAACACAGCCTAATCTA  877


seq1: chr10_49309823_49310925
seq2: B6Ng01-263B22.g_67_1166 (reverse)

seq1  AAATTAAGAATTTTATTTCATAAGAATTG--CTGT-GATCATGGTGCATC  47
      ||||| ||| |||||||||||||||||||   ||| |||||| |||||||
seq2  AAATT-AGAGTTTTATTTCATAAGAATTGGCTTGTGGATCAT-GTGCATC  48

seq1  TTTACAGCAATAAAATCCTAG-ACACATTACTCATGCTAATGGTATTAAG  96
       ||||||||  |||||||||| ||||| ||||||||||||||||||| ||
seq2  -TTACAGCATAAAAATCCTAGAACACA-TACTCATGCTAATGGTATT-AG  95

seq1  TTTCCATCATATCTTCAGTAACATTACTGTAAATTTTTCAGATACTTGAC  146
      ||||||||||||| ||||| ||||||||||||||||||||||||| ||||
seq2  TTTCCATCATATC-TCAGT-ACATTACTGTAAATTTTTCAGATAC-TGAC  142

seq1  TAAA-CCCAACTGCACTCTTCCATGTAGTAATGTATCTTTCCTGAATTTC  195
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCCCAACTGCACTCTTCCATGTAGTAATGTATCTTTCCTGAATTTC  192

seq1  CCAAATTCCTGTCTTCCTATGGCTATTGTAACTTAATTTTACATATTATA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTCCTGTCTTCCTATGGCTATTGTAACTTAATTTTACATATTATA  242

seq1  GCCAGTATTTCTAAAGGGCATTTTTAACTCGCCATCCTATTAAATAAAAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTATTTCTAAAGGGCATTTTTAACTCGCCATCCTATTAAATAAAAT  292

seq1  CTTTCCATTACTGCCTAACTTTAAGCTTATGACTTCTTCAGAATTTATCC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATTACTGCCTAACTTTAAGCTTATGACTTCTTCAGAATTTATCC  342

seq1  CCAGATTCCTTTCTTGCCTGAGACCCACAACTATATCAAGCCACCAACCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTCCTTTCTTGCCTGAGACCCACAACTATATCAAGCCACCAACCA  392

seq1  CTCTCCGATTCTTACAAAACTTGCTGTATTAGCTAGGCAGTATCTGACCC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCGATTCTTACAAAACTTGCTGTATTAGCTAGGCAGTATCTGACCC  442

seq1  TTAGAATCCTACTCTGTATTCCACTTCTCCTTATCTTTTTTAACACAAAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATCCTACTCTGTATTCCACTTCTCCTTATCTTTTTTAACACAAAC  492

seq1  TTTGTCTCCAACTTAAAAATTCCTGGTGATCTTTTTCTATTCAAATTGTA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCCAACTTAAAAATTCCTGGTGATCTTTTTCTATTCAAATTGTA  542

seq1  CATTTTGTATTTCTCTTTACCCTGCTTCTTTCTTTTTTTTACTTTCTCCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGTATTTCTCTTTACCCTGCTTCTTTCTTTTTTTTACTTTCTCCT  592

seq1  CTTCCTCCTTCTTCATTGTAGACCTGCATAAGTGTGGTCACTAATAACCA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCCTTCTTCATTGTAGACCTGCATAAGTGTGGTCACTAATAACCA  642

seq1  GGTTACAGGATCAATATCAGACTGTCTTGAATTCTTCTCTGCCAATAAAC  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACAGGATCAATATCAGACTGTCTTGAATTCTTCTCTGCCAATAAAC  692

seq1  TTGCTGCAAAAGTTTGAAATTTAGCCTTAGGCAAATTTTAAGACAAAGGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCAAAAGTTTGAAATTTAGCCTTAGGCAAATTTTAAGACAAAGGA  742

seq1  AGAGCATAGAGTTTACACTTATAGGTAAACATAATAATGGTTTTCATTGG  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATAGAGTTTACACTTATAGGTAAACATAATAATGGTTTTCATTGG  792

seq1  GAACCACTATTTAGAAGCAAACTGATAAGTGTTATACAGAACAAAGATTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCACTATTTAGAAGCAAACTGATAAGTGTTATACAGAACAAAGATTT  842

seq1  ATGTGACACAGAGCAGAAAATTGTTTTAAAAATGCAATTTACTATTAACC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGACACAGAGCAGAAAATTGTTTTAAAAATGCAATTTACTATTAACC  892

seq1  AGACTTAAAGAATCTTGAGATTTTGAAGAATATCTGTATGAATCCTACCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAAAGAATCTTGAGATTTTGAAGAATATCTGTATGAATCCTACCA  942

seq1  CTTATAAATCTACTTTCCAACCTCCATAAAGCCCACTGTTTATTCTTCTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATAAATCTACTTTCCAACCTCCATAAAGCCCACTGTTTATTCTTCTA  992

seq1  TATTTTAATAGTTCCAGTTCTATCAAATACCGCCTCCCTCTTTATAGCCA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAATAGTTCCAGTTCTATCAAATACCGCCTCCCTCTTTATAGCCA  1042

seq1  TGGTTCCTTTTAATACTCTTCGTTGACAGGGAAGATAATCTTTAAATTCC  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCTTTTAATACTCTTCGTTGACAGGGAAGATAATCTTTAAATTCC  1092

seq1  TGGAATTC  1103
      ||||||||
seq2  TGGAATTC  1100


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