BAC Information

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BAC

Clone NameB6Ng01-264J13
Chromosome10 (Build37)
Map Location 117,328,215 - 117,489,166
singlet/doubletdoublet
Overlap genenone
Upstream geneGm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107, Rap1b
Downstream geneMdm1, Il22, LOC672934, LOC668180, LOC668186, LOC668187, LOC668191, EG668193, Iltifb, LOC668198, EG668203, EG668205, EG668209, EG668213, LOC668216, Ifng, LOC100043478, LOC100042850, Dyrk2, LOC668223
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-264J13.bB6Ng01-264J13.g
ACCGA068460GA068461
length1,113659
definitionB6Ng01-264J13.b B6Ng01-264J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,488,038 - 117,489,166)(117,328,215 - 117,328,870)
sequence
gatcctttcagacaaaatgtgtcagaacatttctatctttcttttttaat
gctgactaatttgaattggcaatgccttctttcagtggggttagattcct
ctctcctatcctaaattccggacaccaatttcctctccgccaacatccta
aagagtatcaatttcttggccatcttgcttgaatatttcatagagaaaca
aatacattctttaattttgttacctaatttttaaaattaccctgtttttt
tttaaataaaatatcttggtaatcttttgacgtgtattcataaagagtat
tgccattttatggcgacagcatatttcattgtataggatgcccataattt
acttaactacttccctgttgacaaatatttgcattgtttcaaatcttctg
ctcttactgtaacactgtgagcatttcaatcactctagataaataagtct
atagaataaattctgacaatggcgttcatgaggtgaagtattcaagatat
acacaattttaaaggctgattccaaataactgttcgtgaagttatacaag
tttattaccccactggtaatgtctgagaacaccaatctcctcatatctgt
tcacatttgacttccttctcaccatgcaacagtggtgcccgacttcaggg
tcccaactctttgggagtcaaatgaccctttcacagggttcaccctagac
accagaatatttacactatgagatctataccacaattcataaaagtggca
aaattacaattatgaaacagcaacagaaataattttatggctggggtcac
tacaacctgaggaaccgtattaaagggtcacagcatcaggaaggttgaga
actgctaccctgcaacagtaaaaatgactatctggagcaatttgattcct
aactacagccgtataaagctagctatctcttaatgtgtttaacaaggaca
tcctcttttctggtgattttatttttatttacacattttttcgcatggac
ttgtggcctttttcctataacttatgagaaagtctatacattaagagatg
agacctgtcactaactgcaatgtttcgactccaattatttatgacttgta
tgtacttaaaaaa
gaattccctgtctaagcaaaaacacacacactgctgtgcttggtccctgt
cttagttagggtttaattgctgcgaagtgacaccatgaccgtggcaactg
ttttaatgggaaacatttaaatgggggctgtcttacaattcagaagttta
gttcatggagggaagcgtggtagcctgcaggcagacatggcggtgctgga
gaggtcgctgagagttctacatcttgatcctcaggtagcaggaagagaca
gtgagccactctgggcctgatttgagcttctgagacctcaaagccagtag
gtcacagtgtccaacaatgccacacctactacagcaaggccacacctact
acagcaaggccacacctactacagcaaggccacgcctactacagcaacac
cacgcctactccagcaaggccacacctcctaatagtgccgctacctatga
gcctggggcgtgggggggcggggaggttcgggagcgagggcggggatttc
cttccaaaccaccagagtctctaaacatgttaatattccatactttccca
ccaggagagatgtttttccatctggtaaagacagcatcagcatccggata
gtaagctgtaaaatagaagttggtactctctccatcctgccccccacttc
cttggccta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_117488038_117489166
seq2: B6Ng01-264J13.b_56_1168 (reverse)

seq1  TTTTTTAAAGTACCATTACAAAGTCATAAATTAAATATGAAGTCGGAAAA  50
       ||||| ||||||   ||| |||||||||||  ||| || |||||  |||
seq2  -TTTTTTAAGTAC--ATAC-AAGTCATAAAT--AAT-TGGAGTCG--AAA  41

seq1  CATTTGCAGTTTAGTGAACAAGGTCTCATCTTCTTTATGTATAGAACTTT  100
      || |||||| |||||||   |||||||||| |||| |||||||| |||||
seq2  CA-TTGCAG-TTAGTGA--CAGGTCTCATC-TCTTAATGTATAG-ACTTT  85

seq1  CTCATAAGTTAATAGGAAAAAGGCCACAAGTCCAATGCG-AAAAATGTGT  149
      |||||||||| |||||||||||||||||||||| ||||| ||||||||||
seq2  CTCATAAGTT-ATAGGAAAAAGGCCACAAGTCC-ATGCGAAAAAATGTGT  133

seq1  AAAATAAAATAAAATCCACAGAAAAGAGGATGTCCTTGTTAAACACATTA  199
      |||  |||||||||||  ||||||||||||||||||||||||||||||||
seq2  AAATAAAAATAAAATCACCAGAAAAGAGGATGTCCTTGTTAAACACATTA  183

seq1  AGAGATAGCTAGCTTTATACGGCTGTAGTTAGGAATCAAATTGCTCCAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAGCTAGCTTTATACGGCTGTAGTTAGGAATCAAATTGCTCCAGA  233

seq1  TAGTCATTTTTACTGTTGCAGGGTAGCAGTTCTCAACCTTCCTGATGCTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCATTTTTACTGTTGCAGGGTAGCAGTTCTCAACCTTCCTGATGCTG  283

seq1  TGACCCTTTAATACGGTTCCTCAGGTTGTAGTGACCCCAGCCATAAAATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCCTTTAATACGGTTCCTCAGGTTGTAGTGACCCCAGCCATAAAATT  333

seq1  ATTTCTGTTGCTGTTTCATAATTGTAATTTTGCCACTTTTATGAATTGTG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTGTTGCTGTTTCATAATTGTAATTTTGCCACTTTTATGAATTGTG  383

seq1  GTATAGATCTCATAGTGTAAATATTCTGGTGTCTAGGGTGAACCCTGTGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGATCTCATAGTGTAAATATTCTGGTGTCTAGGGTGAACCCTGTGA  433

seq1  AAGGGTCATTTGACTCCCAAAGAGTTGGGACCCTGAAGTCGGGCACCACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTCATTTGACTCCCAAAGAGTTGGGACCCTGAAGTCGGGCACCACT  483

seq1  GTTGCATGGTGAGAAGGAAGTCAAATGTGAACAGATATGAGGAGATTGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCATGGTGAGAAGGAAGTCAAATGTGAACAGATATGAGGAGATTGGT  533

seq1  GTTCTCAGACATTACCAGTGGGGTAATAAACTTGTATAACTTCACGAACA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAGACATTACCAGTGGGGTAATAAACTTGTATAACTTCACGAACA  583

seq1  GTTATTTGGAATCAGCCTTTAAAATTGTGTATATCTTGAATACTTCACCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTGGAATCAGCCTTTAAAATTGTGTATATCTTGAATACTTCACCT  633

seq1  CATGAACGCCATTGTCAGAATTTATTCTATAGACTTATTTATCTAGAGTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAACGCCATTGTCAGAATTTATTCTATAGACTTATTTATCTAGAGTG  683

seq1  ATTGAAATGCTCACAGTGTTACAGTAAGAGCAGAAGATTTGAAACAATGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAATGCTCACAGTGTTACAGTAAGAGCAGAAGATTTGAAACAATGC  733

seq1  AAATATTTGTCAACAGGGAAGTAGTTAAGTAAATTATGGGCATCCTATAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTGTCAACAGGGAAGTAGTTAAGTAAATTATGGGCATCCTATAC  783

seq1  AATGAAATATGCTGTCGCCATAAAATGGCAATACTCTTTATGAATACACG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAATATGCTGTCGCCATAAAATGGCAATACTCTTTATGAATACACG  833

seq1  TCAAAAGATTACCAAGATATTTTATTTAAAAAAAAACAGGGTAATTTTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGATTACCAAGATATTTTATTTAAAAAAAAACAGGGTAATTTTAA  883

seq1  AAATTAGGTAACAAAATTAAAGAATGTATTTGTTTCTCTATGAAATATTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAGGTAACAAAATTAAAGAATGTATTTGTTTCTCTATGAAATATTC  933

seq1  AAGCAAGATGGCCAAGAAATTGATACTCTTTAGGATGTTGGCGGAGAGGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGATGGCCAAGAAATTGATACTCTTTAGGATGTTGGCGGAGAGGA  983

seq1  AATTGGTGTCCGGAATTTAGGATAGGAGAGAGGAATCTAACCCCACTGAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGTGTCCGGAATTTAGGATAGGAGAGAGGAATCTAACCCCACTGAA  1033

seq1  AGAAGGCATTGCCAATTCAAATTAGTCAGCATTAAAAAAGAAAGATAGAA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGCATTGCCAATTCAAATTAGTCAGCATTAAAAAAGAAAGATAGAA  1083

seq1  ATGTTCTGACACATTTTGTCTGAAAGGATC  1129
      ||||||||||||||||||||||||||||||
seq2  ATGTTCTGACACATTTTGTCTGAAAGGATC  1113

seq1: chr10_117328215_117328870
seq2: B6Ng01-264J13.g_69_727

seq1  GAATTCCCTGTCTAAGCAAAAACACACACACTGCTGTGCTTGGTCCCTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTGTCTAAGCAAAAACACACACACTGCTGTGCTTGGTCCCTGT  50

seq1  CTTAGTTAGGGTTTAATTGCTGCGAAGTGACACCATGACCGTGGCAACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTAGGGTTTAATTGCTGCGAAGTGACACCATGACCGTGGCAACTG  100

seq1  TTTTAATGGGAAACATTTAAATGGGGGCTGTCTTACAATTCAGAAGTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGGGAAACATTTAAATGGGGGCTGTCTTACAATTCAGAAGTTTA  150

seq1  GTTCATGGAGGGAAGCGTGGTAGCCTGCAGGCAGACATGGCGGTGCTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATGGAGGGAAGCGTGGTAGCCTGCAGGCAGACATGGCGGTGCTGGA  200

seq1  GAGGTCGCTGAGAGTTCTACATCTTGATCCTCAGGTAGCAGGAAGAGACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCGCTGAGAGTTCTACATCTTGATCCTCAGGTAGCAGGAAGAGACA  250

seq1  GTGAGCCACTCTGGGCCTGATTTGAGCTTCTGAGACCTCAAAGCCAGTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCACTCTGGGCCTGATTTGAGCTTCTGAGACCTCAAAGCCAGTAG  300

seq1  GTCACAGTGTCCAACAATGCCACACCTACTACAGCAAGGCCACACCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGTGTCCAACAATGCCACACCTACTACAGCAAGGCCACACCTACT  350

seq1  ACAGCAAGGCCACACCTACTACAGCAAGGCCACGCCTACTACAGCAACAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAAGGCCACACCTACTACAGCAAGGCCACGCCTACTACAGCAACAC  400

seq1  CACGCCTACTCCAGCAAGGCCACACCTCCTAATAGTGCCGCTACCTATGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCCTACTCCAGCAAGGCCACACCTCCTAATAGTGCCGCTACCTATGA  450

seq1  GCCTGGGGCGTGGGGGGGCGGGGAGGTTCGGGAGCGAGGGCGGGGATTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGGGCGTGGGGGGGCGGGGAGGTTCGGGAGCGAGGGCGGGGATTTC  500

seq1  CTTCCAAACCACCAGAGTCTCTAAACATGTTAATATTCTAAACTTTCCCA  550
      |||||||||||||||||||||||||||||||||||||| | |||||||||
seq2  CTTCCAAACCACCAGAGTCTCTAAACATGTTAATATTCCATACTTTCCCA  550

seq1  CCAGGAGAGATG-TTTTCCATCTGGTAAAGACAGCATCAGCATCCGGATA  599
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGAGATGTTTTTCCATCTGGTAAAGACAGCATCAGCATCCGGATA  600

seq1  GTAAGCTGT-AAATAGAAGTTGGTACTCTCCCCATCCTGCCCCCCACTTT  648
      ||||||||| |||||||||||||||||||| |||||||||||||||||| 
seq2  GTAAGCTGTAAAATAGAAGTTGGTACTCTCTCCATCCTGCCCCCCACTTC  650

seq1  CTT-GCCTA  656
      ||| |||||
seq2  CTTGGCCTA  659