BAC Information

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BAC

Clone NameB6Ng01-265O12
Chromosome10 (Build37)
Map Location 9,365,571 - 9,523,163
singlet/doubletdoublet
Overlap geneE130306M17Rik, LOC666658, LOC620417, Stxbp5
Upstream geneSash1, LOC100039173, EG666625, LOC666636
Downstream geneLOC100039238, LOC665110, 9130014G24Rik, Rab32, EG382450, Grm1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-265O12.bB6Ng01-265O12.g
ACCGA069435GA069436
length6671,152
definitionB6Ng01-265O12.b B6Ng01-265O12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,522,497 - 9,523,163)(9,365,571 - 9,366,733)
sequence
gaattccacccacagctggaaaagtcttgctttgcataaataaatgagaa
tgcagttcgactaatctcagtagtggggctctgtggggagtgtctcggct
gctgtcatctggaagaggagctgtggtagatgacttctttagtcactgta
acaggcatctgtaatggaccagggaaaggccctgccctcttcatggctct
gaggcatcagtcctcaacctggcagagctcacatctgcagcgcacgctca
ctcgggagtccatcagtcccactgagcctttctacatagctgggaattgg
tttgaaagaaacattatcagagctgtcttatttgccccttttgccaatct
aagtttatgcttttttatttatgtattgtaattgttcctttacaaagtac
ttgtttctttttttaattgtgacacttccagatatgattttgacatttta
aaatgtatttgtacaaattatggaaccttttataaaagttctacagcata
tctttaagaagtaagcaagttgagcatatttaaaatcttaaaatcttaaa
ttaaacagatatagacaaaattttatcagtccttcccacttactgttttt
aaaatctagcttctgtcatttctcctttggttagatttgtgtgtgtgtgt
gtgtgtgtgtgtatgtg

gaattccaactccaccaaattaaagaattaactttgaaagcatttgctcg
gtttgtagtaacaagtaagaacatctcatattgcgagatttgaggggatt
cattttggagcaaaaatattacgaggtctatttcctattcactccagatt
ttatatttctaaaaccaatattactgtgtaaataaagaaaaaaaagaaag
aaatagaattaaagaatttaatgcaatatactatatgcatcccaggtcgc
caacaaacctgtcttgcccattacaggcaactctgaaagatcctgcaata
tcagcatccaaaccttctctgtgagaataatgaaggcatggcactaaatc
tgcagaaggggaacaaatacatcatggaatctctcttatttatgtgaatg
gcataaatgagcatgcagggtgaacgttgaagccattgtgatgggaagcc
atgctccaaatataactttagtggctaataacaataacagtctcataaag
catcataatacccctctgatcaacatttttgataactacgggccaagttg
tttcactaggcgcatgaatttgtacaagtctgttcccacagaatggctgc
ttaggcaggcaaagctagtgcctgctgtccagttctgccttggaccaggt
ttcagatggttggggcaggggctttggagcatttgcatatacaggatgag
atacgttgatacaggaatctgagtttgaactacacaggatgtttatttgc
ttggcatatacaactcacacacatcacctgaaggaagccttacccgatag
tttccacatgagtcagctttatagtgttgaagttttcacttctgctgtta
ctcaaaaacttagctttaggaggagcttgggctattgacctttggatagc
agatgatctgcttgcatatctttcaggcaggtaaataaatatctgctaag
tgctggtactttcataaatatatgtgcatatattatttttatcatgcgat
gaccttgcaatacattcatcttgttaaaactcagacttctagcaggtgta
gtgggtgcatactgtatcctaataccagagcagagcagaagggccacatg
ttccaagttatcctagtcatgacaccttggactgtatgagaccttgactc
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_9522497_9523163
seq2: B6Ng01-265O12.b_46_712 (reverse)

seq1  CACATACACACACACACACACACACACACAAATCTAACCAAAGGAGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACACACACACACACACACACACAAATCTAACCAAAGGAGAAAT  50

seq1  GACAGAAGCTAGATTTTAAAAACAGTAAGTGGGAAGGACTGATAAAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAAGCTAGATTTTAAAAACAGTAAGTGGGAAGGACTGATAAAATTT  100

seq1  TGTCTATATCTGTTTAATTTAAGATTTTAAGATTTTAAATATGCTCAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATATCTGTTTAATTTAAGATTTTAAGATTTTAAATATGCTCAACT  150

seq1  TGCTTACTTCTTAAAGATATGCTGTAGAACTTTTATAAAAGGTTCCATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACTTCTTAAAGATATGCTGTAGAACTTTTATAAAAGGTTCCATAA  200

seq1  TTTGTACAAATACATTTTAAAATGTCAAAATCATATCTGGAAGTGTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTACAAATACATTTTAAAATGTCAAAATCATATCTGGAAGTGTCACA  250

seq1  ATTAAAAAAAGAAACAAGTACTTTGTAAAGGAACAATTACAATACATAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAAAGAAACAAGTACTTTGTAAAGGAACAATTACAATACATAAA  300

seq1  TAAAAAAGCATAAACTTAGATTGGCAAAAGGGGCAAATAAGACAGCTCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAGCATAAACTTAGATTGGCAAAAGGGGCAAATAAGACAGCTCTG  350

seq1  ATAATGTTTCTTTCAAACCAATTCCCAGCTATGTAGAAAGGCTCAGTGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTTTCTTTCAAACCAATTCCCAGCTATGTAGAAAGGCTCAGTGGG  400

seq1  ACTGATGGACTCCCGAGTGAGCGTGCGCTGCAGATGTGAGCTCTGCCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGGACTCCCGAGTGAGCGTGCGCTGCAGATGTGAGCTCTGCCAGG  450

seq1  TTGAGGACTGATGCCTCAGAGCCATGAAGAGGGCAGGGCCTTTCCCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGACTGATGCCTCAGAGCCATGAAGAGGGCAGGGCCTTTCCCTGGT  500

seq1  CCATTACAGATGCCTGTTACAGTGACTAAAGAAGTCATCTACCACAGCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTACAGATGCCTGTTACAGTGACTAAAGAAGTCATCTACCACAGCTC  550

seq1  CTCTTCCAGATGACAGCAGCCGAGACACTCCCCACAGAGCCCCACTACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGATGACAGCAGCCGAGACACTCCCCACAGAGCCCCACTACTG  600

seq1  AGATTAGTCGAACTGCATTCTCATTTATTTATGCAAAGCAAGACTTTTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAGTCGAACTGCATTCTCATTTATTTATGCAAAGCAAGACTTTTCC  650

seq1  AGCTGTGGGTGGAATTC  667
      |||||||||||||||||
seq2  AGCTGTGGGTGGAATTC  667


seq1: chr10_9365571_9366733
seq2: B6Ng01-265O12.g_70_1221

seq1  GAATTCCAACTCCACCAAATTAAAGAATTAACTTTGAAAGCATTTGCTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACTCCACCAAATTAAAGAATTAACTTTGAAAGCATTTGCTCG  50

seq1  GTTTGTAGTAACAAGTAAGAACATCTCATATTGCGAGATTTGAGGGGATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAGTAACAAGTAAGAACATCTCATATTGCGAGATTTGAGGGGATT  100

seq1  CATTTTGGAGCAAAAATATTACGAGGTCTATTTCCTATTCACTCCAGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGGAGCAAAAATATTACGAGGTCTATTTCCTATTCACTCCAGATT  150

seq1  TTATATTTCTAAAACCAATATTACTGTGTAAATAAAGAAAAAAAAGAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATTTCTAAAACCAATATTACTGTGTAAATAAAGAAAAAAAAGAAAG  200

seq1  AAATAGAATTAAAGAATTTAATGCAATATACTATATGCATCCCAGGTCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGAATTAAAGAATTTAATGCAATATACTATATGCATCCCAGGTCGC  250

seq1  CAACAAACCTGTCTTGCCCATTACAGGCAACTCTGAAAGATCCTGCAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAACCTGTCTTGCCCATTACAGGCAACTCTGAAAGATCCTGCAATA  300

seq1  TCAGCATCCAAACCTTCTCTGTGAGAATAATGAAGGCATGGCACTAAATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCATCCAAACCTTCTCTGTGAGAATAATGAAGGCATGGCACTAAATC  350

seq1  TGCAGAAGGGGAACAAATACATCATGGAATCTCTCTTATTTATGTGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGAAGGGGAACAAATACATCATGGAATCTCTCTTATTTATGTGAATG  400

seq1  GCATAAATGAGCATGCAGGGTGAACGTTGAAGCCATTGTGATGGGAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAAATGAGCATGCAGGGTGAACGTTGAAGCCATTGTGATGGGAAGCC  450

seq1  ATGCTCCAAATATAACTTTAGTGGCTAATAACAATAACAGTCTCATAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCAAATATAACTTTAGTGGCTAATAACAATAACAGTCTCATAAAG  500

seq1  CATCATAATACCCCTCTGATCAACATTTTTGATAACTACGGGCCAAGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATAATACCCCTCTGATCAACATTTTTGATAACTACGGGCCAAGTTG  550

seq1  TTTCACTAGGCGCATGAATTTGTACAAGTCTGTTCCCACAGAATGGCTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTAGGCGCATGAATTTGTACAAGTCTGTTCCCACAGAATGGCTGC  600

seq1  TTAGGCAGGCAAAGCTAGTGCCTGCTGTCCAGTTCTGCCTTGGACCAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCAGGCAAAGCTAGTGCCTGCTGTCCAGTTCTGCCTTGGACCAGGT  650

seq1  TTCAGATGGTTGGGGCAGGGGCTTTGGAGCATTTGCATATACAGGATGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGGTTGGGGCAGGGGCTTTGGAGCATTTGCATATACAGGATGAG  700

seq1  ATACGTTGATACAGGAATCTGAGTTTGAACTACACAGGATGTTTATTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACGTTGATACAGGAATCTGAGTTTGAACTACACAGGATGTTTATTTGC  750

seq1  TTGGCATATACAACTCACACACATCACCTGAAGGAAGCCTTACCCGATAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCATATACAACTCACACACATCACCTGAAGGAAGCCTTACCCGATAG  800

seq1  TTTCCACATGAGTCAGCTTTATAGTGTTGAAGTTTTCACTTCTGCTGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCACATGAGTCAGCTTTATAGTGTTGAAGTTTTCACTTCTGCTGTTA  850

seq1  CTCAAAAACTTAGCTTTAGGAGGAGCTTGGGCTATTGACCTTTGGATAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAACTTAGCTTTAGGAGGAGCTTGGGCTATTGACCTTTGGATAGC  900

seq1  AGATGATCTGCTTGCATATCTTTCAGGCAGGTAAATAAATATCTGCTAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATCTGCTTGCATATCTTTCAGGCAGGTAAATAAATATCTGCTAAG  950

seq1  TGCTGGTACTTTCATAAATATATGTGCATATATTATTTTTATCATGCGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGTACTTTCATAAATATATGTGCATATATTATTTTTATCATGCGAT  1000

seq1  GACCTTGCAATACAATTCATCTTGTTAAAACTCAGACTTCCTAGCCAGGT  1050
      ||||||||||||| ||||||||||||||||||||||||| |||| |||||
seq2  GACCTTGCAATAC-ATTCATCTTGTTAAAACTCAGACTT-CTAG-CAGGT  1047

seq1  GTAGT-GGTGCATACCTGTAATCCTAATACCCAAGAGGCAGAGCCAGAAG  1099
      ||||| |||||||| |||| |||||||||||  ||| |||||| ||||||
seq2  GTAGTGGGTGCATA-CTGT-ATCCTAATACC--AGA-GCAGAG-CAGAAG  1091

seq1  GGCCACATGTCCAAAGTAATTCTTAGTTCATGACCACCCTGGACTGTATG  1149
      |||||||||| | |||| | || ||| |||||| |||| |||||||||||
seq2  GGCCACATGTTCCAAGTTA-TCCTAG-TCATGA-CACCTTGGACTGTATG  1138

seq1  AGACCCTGACTCAA  1163
      ||||| ||||||||
seq2  AGACCTTGACTCAA  1152


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