BAC Information

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BAC

Clone NameB6Ng01-266K08
Chromosome10 (Build37)
Map Location 19,644,015 - 19,854,112
singlet/doubletdoublet
Overlap geneMap3k5
Upstream geneTnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2, Il20ra, Slc35d3, Pex7
Downstream geneMtap7, EG621697, Bclaf1, 2610016C23Rik, LOC382344, Pde7b, LOC667202, Ahi1, Myb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-266K08.bB6Ng01-266K08.g
ACCGA069991GA069992
length1,1751,122
definitionB6Ng01-266K08.b B6Ng01-266K08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,644,015 - 19,645,158)(19,852,973 - 19,854,112)
sequence
gaattctcctgattcagtctttcaagcaattgcaactgtaggcacaagat
acttcatagagtttaatttttaaagaagtagttttactgcttttcttggt
agtgaaaaatggaattgctaaagaacacaataatgaaaatcagggcacgg
ctgtagtggccattgttacctatatgagacctgcgtgtgactaagacatt
tagaaatccagcatggggaggggaggggctcacctggctcaggagctctt
ggcaattggtaaaggctagaggtcagattgttattttctttggcaggtgg
acactaagaggttatccattctccagtggatagagcatccatgaacatgt
gggaagcactagtttcatctagtaagttattaaaaaaaaaaaaaaaaaaa
aaaaaggaggatgtgaagtttggagggagatacattgtggctactccagc
aggagttgaaggcagagtgtagggtagatatagttatgatacattgtatg
catgtgtgaaaatttcaaagaataattttaaaaattctacttaaaaatag
agtgctgggtagtgtagtacacacatttaatcccagcacttgggaggcag
agccaggcagatctctgaattcaaggacagcctagtctatagagtgagtt
ccaggacagccagggcttcacagagaaaacctgtctccaaaaacaaacaa
acaaacaaacaaacaaacaaataacaaacaaaaacaaaccccaagcaact
cctcaaaacaaacacacaaaaatacagagagcaatgtcaatggttaatta
gaagagataaaatctatgaaaagccagaatgatttttaatagaaggcaaa
attctcaaggagagtaaataaaaagaaaaatgcaaagttatactggccct
cattttatgtagaattaataatactatgttgttggtatattaagtttatt
acctggccctccaggtattgtaacaaacatagtaaacaatcacttattgt
ccagggaaggtgatatccttttccatgtaagatcattgcccaaagaacca
aattggagttaccatctcctagttcttttttgggaagaaaatatattttt
ctaacttacctcttgaattcatttgcccccatgtttttgctttacagagt
gcatttccataacaaataatactgt
gaattcaaggctagcctggactacatgagaccctgaataaaaaaaaaagg
gttgaaaaaattaaattttaagaaataataatatttaattgaaagtataa
aaggactaagatagacattatcagtccctgctttatgctgctcggtgctt
ttagtaaaccatccgctcttcttcaaattatttgtaaataaaacatttac
tctcacctcacttttctgttggttaggggaatctaggggggaaaaaaatc
taaaagggaaggagggcagtggtccttagccttcacggagtcaactaaca
gtgtgtagagaaaacacaaacgtgtgtagattattacagaagggtagctg
tgtctgaggataagacagaaccatggcagatccctatctatagaaatgga
tagatttggagaaggaagacttcaggttgagcacgaggacctaagaggga
cctgtgaccaagcgaagaaaacagctgggaaccgtggctcctgggaactg
cagatgtcacaaacgcggcagacagaaggcagtgctggacggtgagctca
cagcaaagcaaacaggcacaggagagcgaggagaaccacacacgcttctg
agatgcttagtgaggtaggtcctactcgcgcccaggtgggcgggcagggg
tctgagggacagacagacaagcagacagagcagctctgtggttaacttgg
tagctttcctgtagaaccattctgagcagaaaccatggagggtagggtcg
ggcagcacagtaattctggaaggctccccctcagagagcagagcaggggc
tccaaaatcaagtgcagtcagggttgagtggccgggtgaagcaaagcgat
tgagcagggtagccgctacaaggaaggttagaagaggcacacggcagagc
tgtgcatcagaagaccaagccgggatatggatgatcagagccatgaaatc
ctccaagagagcagtgaagttaaactttcaatagaactaagtcacctttg
ccaccacggtggacactattatcttcgactagatctctaatatttgacat
ctttttatgatctctaaaagttcactgtagaccagaagcataaagtcagc
ttccatgtcaacttggacggca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_19644015_19645158
seq2: B6Ng01-266K08.b_44_1218

seq1  GAATTCTCCTGATTCAGTCTTTCAAGCAATTGCAACTGTAGGCACAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGATTCAGTCTTTCAAGCAATTGCAACTGTAGGCACAAGAT  50

seq1  ACTTCATAGAGTTTAATTTTTAAAGAAGTAGTTTTACTGCTTTTCTTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATAGAGTTTAATTTTTAAAGAAGTAGTTTTACTGCTTTTCTTGGT  100

seq1  AGTGAAAAATGGAATTGCTAAAGAACACAATAATGAAAATCAGGGCACGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAAAATGGAATTGCTAAAGAACACAATAATGAAAATCAGGGCACGG  150

seq1  CTGTAGTGGCCATTGTTACCTATATGAGACCTGCGTGTGACTAAGACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGTGGCCATTGTTACCTATATGAGACCTGCGTGTGACTAAGACATT  200

seq1  TAGAAATCCAGCATGGGGAGGGGAGGGGCTCACCTGGCTCAGGAGCTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATCCAGCATGGGGAGGGGAGGGGCTCACCTGGCTCAGGAGCTCTT  250

seq1  GGCAATTGGTAAAGGCTAGAGGTCAGATTGTTATTTTCTTTGGCAGGTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTGGTAAAGGCTAGAGGTCAGATTGTTATTTTCTTTGGCAGGTGG  300

seq1  ACACTAAGAGGTTATCCATTCTCCAGTGGATAGAGCATCCATGAACATGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAGAGGTTATCCATTCTCCAGTGGATAGAGCATCCATGAACATGT  350

seq1  GGGAAGCACTAGTTTCATCTAGTAAGTTATTAAAAAAAAAAAAAAAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGCACTAGTTTCATCTAGTAAGTTATTAAAAAAAAAAAAAAAAAAA  400

seq1  AAAAAGGAGGATGTGAAGTTTGGAGGGAGATACATTGTGGCTACTCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGGAGGATGTGAAGTTTGGAGGGAGATACATTGTGGCTACTCCAGC  450

seq1  AGGAGTTGAAGGCAGAGTGTAGGGTAGATATAGTTATGATACATTGTATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTGAAGGCAGAGTGTAGGGTAGATATAGTTATGATACATTGTATG  500

seq1  CATGTGTGAAAATTTCAAAGAATAATTTTAAAAATTCTACTTAAAAATAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTGAAAATTTCAAAGAATAATTTTAAAAATTCTACTTAAAAATAG  550

seq1  AGTGCTGGGTAGTGTAGTACACACATTTAATCCCAGCACTTGGGAGGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGTAGTGTAGTACACACATTTAATCCCAGCACTTGGGAGGCAG  600

seq1  AGCCAGGCAGATCTCTGAATTCAAGGACAGCCTAGTCTATAGAGTGAGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGGCAGATCTCTGAATTCAAGGACAGCCTAGTCTATAGAGTGAGTT  650

seq1  CCAGGACAGCCAGGGCTTCACAGAGAAAACCTGTCTCCAAAAACAAACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACAGCCAGGGCTTCACAGAGAAAACCTGTCTCCAAAAACAAACAA  700

seq1  ACAAACAAACAAACAAACAAATAACAAACAAAAACAAACCCCAAGCAACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACAAACAAACAAATAACAAACAAAAACAAACCCCAAGCAACT  750

seq1  CCTCAAAACAAACACACAAAAATACAGAGAGCAATGTCAATGGTTAATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAACAAACACACAAAAATACAGAGAGCAATGTCAATGGTTAATTA  800

seq1  GAAGAGATAAAATCTATGAAAAGCCAGAATGA-TTTTAATAGAAGGCAAA  849
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAAGAGATAAAATCTATGAAAAGCCAGAATGATTTTTAATAGAAGGCAAA  850

seq1  ATTCTCAAGGAGAGTAAATAAAA--GAAAATGCAAAGTTATACTGG-CCT  896
      |||||||||||||||||||||||   |||||||||||||||||||| |||
seq2  ATTCTCAAGGAGAGTAAATAAAAAGAAAAATGCAAAGTTATACTGGCCCT  900

seq1  CA-TTTATGTAGAATTA--TATACTATGTTGTT-GTATATTAAG-TTAT-  940
      || ||||||||||||||   ||||||||||||| |||||||||| |||| 
seq2  CATTTTATGTAGAATTAATAATACTATGTTGTTGGTATATTAAGTTTATT  950

seq1  -ACTGGCC--TCAAGTA-TGTA--CAACATAGTAAAC-ATCACTTA-TGT  982
        ||||||   || ||| ||||   |||||||||||| |||||||| |||
seq2  ACCTGGCCCTCCAGGTATTGTAACAAACATAGTAAACAATCACTTATTGT  1000

seq1  -CAGGGAA-GTGATATC--TTTCCATGTAAGATCAT--GCCAAAGAAACA  1026
       ||||||| ||||||||  |||||||||||||||||   |||||||| ||
seq2  CCAGGGAAGGTGATATCCTTTTCCATGTAAGATCATTGCCCAAAGAACCA  1050

seq1  AATT-GAGTACCCATCT-CTAGTTCTTTTTT-GGAAGAAAATATA-TTTT  1072
      |||| ||||  |||||| ||||||||||||| ||||||||||||| ||||
seq2  AATTGGAGTTACCATCTCCTAGTTCTTTTTTGGGAAGAAAATATATTTTT  1100

seq1  CTAACT--ACTC-TGAATTCTTTTCCCCCCATGTTTTTGCTTTAACAGAG  1119
      ||||||   ||| ||||||| ||| |||||||||||||||||| ||||||
seq2  CTAACTTACCTCTTGAATTCATTTGCCCCCATGTTTTTGCTTT-ACAGAG  1149

seq1  TGCATTTCTAT-ACAAATAATACTGT  1144
      |||||||| || ||||||||||||||
seq2  TGCATTTCCATAACAAATAATACTGT  1175

seq1: chr10_19852973_19854112
seq2: B6Ng01-266K08.g_67_1188 (reverse)

seq1  TGCCGGTCCCAGTTGACATGTGGAAAGCTGACTTTATGGCTCTGGGTCTA  50
      |||| |||| |||||||||   | ||||||||||||||  ||| ||||||
seq2  TGCC-GTCCAAGTTGACAT---GGAAGCTGACTTTATGCTTCT-GGTCTA  45

seq1  CAGTGAAAACTTTTTAGAGAATCAATAAAAGATGTTCAAATATTTAGAGA  100
      |||||||    |||||||| ||||  |||||||| ||||||| |||||||
seq2  CAGTGAA---CTTTTAGAG-ATCATAAAAAGATG-TCAAATA-TTAGAGA  89

seq1  TCTTAGTCGAAGAT-ATAGTTGTCCACCGGTGGTGGCAAAGGTGACTTAG  149
      || ||||||||||| |||| |||||||| |||||||||||||||||||||
seq2  TC-TAGTCGAAGATAATAG-TGTCCACC-GTGGTGGCAAAGGTGACTTAG  136

seq1  TTCTTATTGAAAGTTTAACTTCACCTGCTTCTCTTTGGAGATTTTCATGG  199
      ||| ||||||||||||||||||| |||| |||| ||||||  ||||||||
seq2  TTC-TATTGAAAGTTTAACTTCA-CTGC-TCTC-TTGGAGGATTTCATGG  182

seq1  CTCTGATCATCCATATCCCGGCTTGGTCTTCTGATGCACAGCTCTGCCGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATCATCCATATCCCGGCTTGGTCTTCTGATGCACAGCTCTGCCGT  232

seq1  GTGCCTCTTCTAACCCTTCCTTGTAGCGGCTACCCTGCTCAATCGCTTTG  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTGCCTCTTCTAA-CCTTCCTTGTAGCGGCTACCCTGCTCAATCGCTTTG  281

seq1  CTTCACCCGGCCACTCAACCCTGACTGCACTTGATTTTGGAGCCCCTGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACCCGGCCACTCAACCCTGACTGCACTTGATTTTGGAGCCCCTGCT  331

seq1  CTGCTCTCTGAGGGGGAGCCTTCCAGAATTACTGTGCTGCCCGACCCTAC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCTCTGAGGGGGAGCCTTCCAGAATTACTGTGCTGCCCGACCCTAC  381

seq1  CCTCCATGGTTTCTGCTCAGAATGGTTCTACAGGAAAGCTACCAAGTTAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGGTTTCTGCTCAGAATGGTTCTACAGGAAAGCTACCAAGTTAA  431

seq1  CCACAGAGCTGCTCTGTCTGCTTGTCTGTCTGTCCCTCAGACCCCTGCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAGCTGCTCTGTCTGCTTGTCTGTCTGTCCCTCAGACCCCTGCCC  481

seq1  GCCCACCTGGGCGCGAGTAGGACCTACCTCACTAAGCATCTCAGAAGCGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACCTGGGCGCGAGTAGGACCTACCTCACTAAGCATCTCAGAAGCGT  531

seq1  GTGTGGTTCTCCTCGCTCTCCTGTGCCTGTTTGCTTTGCTGTGAGCTCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTTCTCCTCGCTCTCCTGTGCCTGTTTGCTTTGCTGTGAGCTCAC  581

seq1  CGTCCAGCACTGCCTTCTGTCTGCCGCGTTTGTGACATCTGCAGTTCCCA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCAGCACTGCCTTCTGTCTGCCGCGTTTGTGACATCTGCAGTTCCCA  631

seq1  GGAGCCACGGTTCCCAGCTGTTTTCTTCGCTTGGTCACAGGTCCCTCTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCCACGGTTCCCAGCTGTTTTCTTCGCTTGGTCACAGGTCCCTCTTA  681

seq1  GGTCCTCGTGCTCAACCTGAAGTCTTCCTTCTCCAAATCTATCCATTTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTCGTGCTCAACCTGAAGTCTTCCTTCTCCAAATCTATCCATTTCT  731

seq1  ATAGATAGGGATCTGCCATGGTTCTGTCTTATCCTCAGACACAGCTACCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAGGGATCTGCCATGGTTCTGTCTTATCCTCAGACACAGCTACCC  781

seq1  TTCTGTAATAATCTACACACGTTTGTGTTTTCTCTACACACTGTTAGTTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAATAATCTACACACGTTTGTGTTTTCTCTACACACTGTTAGTTG  831

seq1  ACTCCGTGAAGGCTAAGGACCACTGCCCTCCTTCCCTTTTAGATTTTTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCGTGAAGGCTAAGGACCACTGCCCTCCTTCCCTTTTAGATTTTTTT  881

seq1  CCCCCCTAGATTCCCCTAACCAACAGAAAAGTGAGGTGAGAGTAAATGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCTAGATTCCCCTAACCAACAGAAAAGTGAGGTGAGAGTAAATGTT  931

seq1  TTATTTACAAATAATTTGAAGAAGAGCGGATGGTTTACTAAAAGCACCGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACAAATAATTTGAAGAAGAGCGGATGGTTTACTAAAAGCACCGA  981

seq1  GCAGCATAAAGCAGGGACTGATAATGTCTATCTTAGTCCTTTTATACTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCATAAAGCAGGGACTGATAATGTCTATCTTAGTCCTTTTATACTTT  1031

seq1  CAATTAAATATTATTATTTCTTAAAATTTAATTTTTTCAACCCTTTTTTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAAATATTATTATTTCTTAAAATTTAATTTTTTCAACCCTTTTTTT  1081

seq1  TTTATTCAGGGTCTCATGTAGTCCAGGCTAGCCTTGAATTC  1140
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCAGGGTCTCATGTAGTCCAGGCTAGCCTTGAATTC  1122