BAC Information

Click to search

BAC

Clone NameB6Ng01-267I15
Chromosome10 (Build37)
Map Location 27,834,031 - 28,005,481
singlet/doubletdoublet
Overlap genePtprk
Upstream geneLama2, LOC100040385, LOC100040961, LOC100040401
Downstream geneE430004N04Rik, 4930519F09Rik, 2310057J18Rik, LOC432447, 6330407J23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-267I15.bB6Ng01-267I15.g
ACCGA070633GA070634
length1,1851,139
definitionB6Ng01-267I15.b B6Ng01-267I15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,004,272 - 28,005,481)(27,834,031 - 27,835,167)
sequence
gaattcagaaacagaaatgctaccagaggactgttcttctcttattattt
aaattagtaagctggtgtactgagggatctttctgcattttacagtctag
cctcttgcttctctgcaattagtaaataatacaaaatgtccgcctacaat
ttacatatttatttgtataaaatcaattgatcatgctattggagggcaaa
gaaaaaacttattgaattttatcttgttcattgggcatagagtatttgca
atgaatgtgaaatatatatatgctaggaccaacatattttaagaattagc
tacttactaacaatattgttgtgcagccccactcccaacctatatgccat
ctagtctcaggttatttgctcctttaatagtgacaactataaatcccatc
tcatgaaatgggacttagagcagatcagaactggtgggttacacccataa
cgtgcacatcactaattcactaatgtacatatcttcccatacatctgttg
tagctttcagggtccattgttgggtgaaattgattcttacttttctctgc
ttgcagagtgtgtagcaccttccagcaccaagaacactaattcggaaaga
tgaatcttctaattgaacactaccctgacttctccatattctgcaactca
aatataaactgagttgcaaacagacaccagctatttgtttacttattatg
aaaacttgagacacacttcacatactatgttgataatatacattctaaac
tactttagactaaacaaaattatatttcattaaataatataggtacagaa
atggattattttataaacattagtagactgaactgctgaaaagaaataat
acattgaaagaatatgatctttagttattatactaagcccatatatttgt
gagctacagtatacttttgcagtagcaataaaagagaacatgtttttgtg
tatatacacaattataatatagtataaaaatgcatcatagccccgattaa
agagatatacttacacatatacttcactcttctgtgtgaaatctcatact
gatatgatttcctttgaagatactgatgatcagtacatatttcagatgtg
cacatgtaagaaactccctggtggtgcgtcatggaactttttagcacact
ctcttcatgcagcattttatgaccgacagcactgg

gaattccctatttccttgcagcccacattctgttcctgtggatactctga
cagcaaagacatggccactgattgaccagctgaggggtccatgggtggct
ttcaaagaggcactcctttttgtttcttaccgtgttgcaatacatacatg
tacatatatacatacatagctagtggaccatattgtttctgttgagcctg
tgtacccctgtttctctgtggagcccttgctgtcctgcaacttactctgt
agaccacgctgtcttgtaacagggtttaaaagcatgtaccaccactggca
gctttctatttgtcttttgatacacattttatttaagcaggcctgtgctt
tatttttttcatgaagttttctttctttcaatgatctgacaaataagaat
atcacacaagtagctactccaacatttgtcccctcccaaattctacacat
tctgaagcaatggaacttctcctaaggttttatactttctgattagattt
atttatttatccacctcgaagaaagaaaacaattatggcgagttgaaagc
aggggagagaaagtagttttatattctctgctgactcatgtgtctgttta
cgtcgactctgtctgaagctcaaagaagataaagacctgaatgttctttc
ccttgcagagcttcatctttatgggacatgcatattagaatgagtatgga
ggacagcttaggaagaaaggagaccaagagaggggtcatgttaggtgtgg
aggaagaatagaaatcagacaaaagcacactcgttgtgtttcttttcttt
ttcctttttgttttttctttttctttttctccttccttccttccttcctt
ccattacttccttccttccttccttttttcctttttttttctttttgaaa
acaggttttctctgtctagtcctgggctgtcctggaaactcactctgtag
accagggttggcctcaaactcagaaatctgcctgcctctccctcccaaat
gctgggaatttaaggcatgggcaacaactgctggctcttttttcttttct
tgtgtcaggttcttcaactgtagtcaagccaaacttgggcccgaagctct
aaggcaacctcttcctcacaaggtgagattctactctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_28004272_28005481
seq2: B6Ng01-267I15.b_47_1231 (reverse)

seq1  CCAGTTGCTGTCGTGTTCATTTATAAAATGCTTTGCATATGAAGAGATGT  50
      |||| ||||||||       | |||||||||  |||  |||||||||   
seq2  CCAG-TGCTGTCG------GTCATAAAATGC--TGC--ATGAAGAGAGTG  39

seq1  TGCTAAAAAAGTTTCATGACCGCA-CAC--AGGAGTTTCTTACATTGTGC  97
      |||| |||||||| ||||| |||| |||   ||||||||||||| |||||
seq2  TGCT-AAAAAGTTCCATGA-CGCACCACCAGGGAGTTTCTTACA-TGTGC  86

seq1  ACATCTGAAATATGTACTGATCATCCAGTTATCTTTTAAAAGGAAATCAA  147
      |||||||||||||||||||||||| ||| ||||  || ||||||||||| 
seq2  ACATCTGAAATATGTACTGATCAT-CAG-TATC--TTCAAAGGAAATCA-  131

seq1  TTATCAGTAATGGAAGGATTTTCACACAGAAGAGTGAAGTTATATGTGTA  197
       ||||||||   ||     |||||||||||||||||||| ||||||||||
seq2  -TATCAGTATGAGA-----TTTCACACAGAAGAGTGAAG-TATATGTGTA  174

seq1  AGTATATTCCTCTTT-ATCGGGGCTATGATGCATTTTTTATACTATATTA  246
      |||||||  |||||| ||||||||||||||||| ||||||||||||||||
seq2  AGTATAT--CTCTTTAATCGGGGCTATGATGCA-TTTTTATACTATATTA  221

seq1  TAATTGTGTATATACACAAAAACATGTTCTCTTTTTATTGCTACTGCAAA  296
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TAATTGTGTATATACACAAAAACATGTTCTC-TTTTATTGCTACTGCAAA  270

seq1  AGTATACTGTAGCTCACAAATATATGGGCTTAGTATAATAACTAAAGATC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATACTGTAGCTCACAAATATATGGGCTTAGTATAATAACTAAAGATC  320

seq1  ATATTCTTTCAATGTATTATTTCTTTTCAGCAGTTCAGTCTACTAATGTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCTTTCAATGTATTATTTCTTTTCAGCAGTTCAGTCTACTAATGTT  370

seq1  TATAAAATAATCCATTTCTGTACCTATATTATTTAATGAAATATAATTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAATAATCCATTTCTGTACCTATATTATTTAATGAAATATAATTTT  420

seq1  GTTTAGTCTAAAGTAG-TTAGAATGTATATTATCAACATAGTATGTGAAG  495
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GTTTAGTCTAAAGTAGTTTAGAATGTATATTATCAACATAGTATGTGAAG  470

seq1  TGTGTCTCAAGTTTTCATAATAAGTAAACAAATAGCTGGTGTCTGTTTGC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTCAAGTTTTCATAATAAGTAAACAAATAGCTGGTGTCTGTTTGC  520

seq1  AACTCAGTTTATATTTGAGTTGCAGAATATGGAGAAGTCAGGGTAGTGTT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGTTTATATTTGAGTTGCAGAATATGGAGAAGTCAGGGTAGTGTT  570

seq1  CAATTAGAAGATTCATCTTTCCGAATTAGTGTTCTTGGTGCTGGAAGGTG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTAGAAGATTCATCTTTCCGAATTAGTGTTCTTGGTGCTGGAAGGTG  620

seq1  CTACACACTCTGCAAGCAGAGAAAAGTAAGAATCAATTTCACCCAACAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACACACTCTGCAAGCAGAGAAAAGTAAGAATCAATTTCACCCAACAAT  670

seq1  GGACCCTGAAAGCTACAACAGATGTATGGGAAGATATGTACATTAGTGAA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTGAAAGCTACAACAGATGTATGGGAAGATATGTACATTAGTGAA  720

seq1  TTAGTGATGTGCACGTTATGGGTGTAACCCACCAGTTCTGATCTGCTCTA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTGATGTGCACGTTATGGGTGTAACCCACCAGTTCTGATCTGCTCTA  770

seq1  AGTCCCATTTCATGAGATGGGATTTATAGTTGTCACTATTAAAGGAGCAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCCATTTCATGAGATGGGATTTATAGTTGTCACTATTAAAGGAGCAA  820

seq1  ATAACCTGAGACTAGATGGCATATAGGTTGGGAGTGGGGCTGCACAACAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTGAGACTAGATGGCATATAGGTTGGGAGTGGGGCTGCACAACAA  870

seq1  TATTGTTAGTAAGTAGCTAATTCTTAAAATATGTTGGTCCTAGCATATAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTAGTAAGTAGCTAATTCTTAAAATATGTTGGTCCTAGCATATAT  920

seq1  ATATTTCACATTCATTGCAAATACTCTATGCCCAATGAACAAGATAAAAT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCACATTCATTGCAAATACTCTATGCCCAATGAACAAGATAAAAT  970

seq1  TCAATAAGTTTTTTCTTTGCCCTCCAATAGCATGATCAATTGATTTTATA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAGTTTTTTCTTTGCCCTCCAATAGCATGATCAATTGATTTTATA  1020

seq1  CAAATAAATATGTAAATTGTAGGCGGACATTTTGTATTATTTACTAATTG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAATATGTAAATTGTAGGCGGACATTTTGTATTATTTACTAATTG  1070

seq1  CAGAGAAGCAAGAGGCTAGACTGTAAAATGCAGAAAGATCCCTCAGTACA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAGCAAGAGGCTAGACTGTAAAATGCAGAAAGATCCCTCAGTACA  1120

seq1  CCAGCTTACTAATTTAAATAATAAGAGAAGAACAGTCCTCTGGTAGCATT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTACTAATTTAAATAATAAGAGAAGAACAGTCCTCTGGTAGCATT  1170

seq1  TCTGTTTCTGAATTC  1210
      |||||||||||||||
seq2  TCTGTTTCTGAATTC  1185


seq1: chr10_27834031_27835167
seq2: B6Ng01-267I15.g_66_1204

seq1  GAATTCCCTATTTCCTTGCAGCCCACATTCTGTTCCTGTGGATACTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTATTTCCTTGCAGCCCACATTCTGTTCCTGTGGATACTCTGA  50

seq1  CAGCAAAGACATGGCCACTGATTGACCAGCTGAGGGGTCCATGGGTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGACATGGCCACTGATTGACCAGCTGAGGGGTCCATGGGTGGCT  100

seq1  TTCAAAGAGGCACTCCTTTTTGTTTCTTACCGTGTTGCAATACATACATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGAGGCACTCCTTTTTGTTTCTTACCGTGTTGCAATACATACATG  150

seq1  TACATATATACATACATAGCTAGTGGACCATATTGTTTCTGTTGAGCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATATATACATACATAGCTAGTGGACCATATTGTTTCTGTTGAGCCTG  200

seq1  TGTACCCCTGTTTCTCTGTGGAGCCCTTGCTGTCCTGCAACTTACTCTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCCCTGTTTCTCTGTGGAGCCCTTGCTGTCCTGCAACTTACTCTGT  250

seq1  AGACCACGCTGTCTTGTAACAGGGTTTAAAAGCATGTACCACCACTGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCACGCTGTCTTGTAACAGGGTTTAAAAGCATGTACCACCACTGGCA  300

seq1  GCTTTCTATTTGTCTTTTGATACACATTTTATTTAAGCAGGCCTGTGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTATTTGTCTTTTGATACACATTTTATTTAAGCAGGCCTGTGCTT  350

seq1  TATTTTTTTCATGAAGTTTTCTTTCTTTCAATGATCTGACAAATAAGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTCATGAAGTTTTCTTTCTTTCAATGATCTGACAAATAAGAAT  400

seq1  ATCACACAAGTAGCTACTCCAACATTTGTCCCCTCCCAAATTCTACACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACAAGTAGCTACTCCAACATTTGTCCCCTCCCAAATTCTACACAT  450

seq1  TCTGAAGCAATGGAACTTCTCCTAAGGTTTTATACTTTCTGATTAGATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGCAATGGAACTTCTCCTAAGGTTTTATACTTTCTGATTAGATTT  500

seq1  ATTTATTTATCCACCTCGAAGAAAGAAAACAATTATGGCGAGTTGAAAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATCCACCTCGAAGAAAGAAAACAATTATGGCGAGTTGAAAGC  550

seq1  AGGGGAGAGAAAGTAGTTTTATATTCTCTGCTGACTCATGTGTCTGTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAGAAAGTAGTTTTATATTCTCTGCTGACTCATGTGTCTGTTTA  600

seq1  CGTCGACTCTGTCTGAAGCTCAAAGAAGATAAAGACCTGAATGTTCTTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCGACTCTGTCTGAAGCTCAAAGAAGATAAAGACCTGAATGTTCTTTC  650

seq1  CCTTGCAGAGCTTCATCTTTATGGGACATGCATATTAGAATGAGTATGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCAGAGCTTCATCTTTATGGGACATGCATATTAGAATGAGTATGGA  700

seq1  GGACAGCTTAGGAAGAAAGGAGACCAAGAGAGGGGTCATGTTAGGTGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGCTTAGGAAGAAAGGAGACCAAGAGAGGGGTCATGTTAGGTGTGG  750

seq1  AGGAAGAATAGAAATCAGACAAAAGCACACTCGTTGTGTTTCTTTTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGAATAGAAATCAGACAAAAGCACACTCGTTGTGTTTCTTTTCTTT  800

seq1  TTCCTTTTTGTTTTTTCTTTTTCTTTTTCTCCTTCCTTCCTTCCTTCCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTGTTTTTTCTTTTTCTTTTTCTCCTTCCTTCCTTCCTTCCTT  850

seq1  CC-TTCCTTCCTTCCTTCCTTCCTTTTTTCC-TTTTTTTTCTTTTTG-AA  897
      || || ||||||||||||||||||||||||| ||||||||||||||| ||
seq2  CCATTACTTCCTTCCTTCCTTCCTTTTTTCCTTTTTTTTTCTTTTTGAAA  900

seq1  ACAGGTTTTCTCTGTCTAGTCCT-GGCTGTCCTGG-AACTCACTCTGTAG  945
      ||||||||||||||||||||||| ||||||||||| ||||||||||||||
seq2  ACAGGTTTTCTCTGTCTAGTCCTGGGCTGTCCTGGAAACTCACTCTGTAG  950

seq1  ACCA-GGTTGGCCTCAAACTCAGAAATCTGCCTGCCTCTCCCTCCCAAAT  994
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGTTGGCCTCAAACTCAGAAATCTGCCTGCCTCTCCCTCCCAAAT  1000

seq1  GCTGGG-ATTTAAGGCATGGGCCACCACTGCCTGGCTTCTTTTTCCTTTT  1043
      |||||| ||||||||||||||| || |||| ||||||  ||||||  |||
seq2  GCTGGGAATTTAAGGCATGGGCAACAACTG-CTGGCTCTTTTTTC--TTT  1047

seq1  TCTTGTGTCAGGGTC-TCACCTGTTAGTCAGGCCCAGCTTGGCCCCG-AG  1091
      |||||||||||| || ||| ||| |||||| ||| | ||||| |||| ||
seq2  TCTTGTGTCAGGTTCTTCAACTG-TAGTCAAGCCAAACTTGGGCCCGAAG  1096

seq1  CTCT-AGGCAACCCTCTTTCCTCACA--GTGAAAGGATTTCTACTCTGA  1137
      |||| |||||| |||| |||||||||  |||| |    |||||||||||
seq2  CTCTAAGGCAA-CCTC-TTCCTCACAAGGTGAGA----TTCTACTCTGA  1139


| Home | SequenceCutter | Blast | Download |