BAC Information

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BAC

Clone NameB6Ng01-272G24
Chromosome10 (Build37)
Map Location 36,987,167 - 37,120,388
singlet/doubletdoublet
Overlap genenone
Upstream geneHs3st5, Hdac2, Marcks, LOC100040846
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272G24.bB6Ng01-272G24.g
ACCGA074263GA074264
length1,163682
definitionB6Ng01-272G24.b B6Ng01-272G24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,119,230 - 37,120,388)(36,987,167 - 36,987,848)
sequence
gaattccttccacattatttggacgtgaaggaggaagtaggtcagaaaat
tatgacccctgcatatttagcccaatatacatcctcattccagggagcta
attgtgggctattgaaaatgaaagtttaaagagaatagcatgaaaaagac
attctcatagcttctcctctgaagagcccataaatagcttggaagttgtc
tccaggggacctttgcaacagcttgtgggcgggtagctgtaattaagagc
agccagatgaaatgtaatctatttaaacatcgccaccatttttttcttaa
aattatgatttttctctagtttcttggctcaagagatatatttcattacc
ctcctcgtctttctcagatatcaaagcaaaagtgcaacccagtgaggcag
aaaggaaaacatttctatgagtgcataaaatctttcaaactgggaaagca
cttaaaagtgactaacagcatcttatccttgatttctgtatttattacct
gtgtatgagaacatgggatatgtaatcattataatattaggttcattttt
tcccctactgaatgtaaaaatgttcaatcatgaaactggaaagggttggg
agtgataggagaaagatctgtgcttctttgaggaattcaaatactggaag
aagaaacctgaaaagttattttaaaaatttatgaaactatacagaacaaa
ctaataatttttaagaacagtgagtcaatatatttcctagaggaagaaat
atattcaaacactattttatcccatggattaactgttgccaggactgaga
cattaccttttctttcttttctggaaagaaatgggtgcccctttttgcca
cataagatctttgcagagtgaaggctcataacatacttagctaactagca
ccctaattctgtgtgtacatttgggaagcaatatggtgtgaaaatgatcc
ccatggtaaccattcaactaataaatttaggttcagaaccgtaattagat
ttttaagcctttggttgggccttctgtagaacatctaaattcaaggggtt
cgaggaaagtacagtttgattcatcttgtacagattgagtctaaatgtca
ccacccttaggtgcctctgtctggtctggttccattctcataaacttgaa
tggtcattgaaat

gaattctctagtgcttctttaaacaaacaaacgaacgaacaaacaaacaa
tcaggagatgccttttaattaccaaggggttgtccacagttgctaagcta
caactgtaaaatttgatggctcttttgttcttcttagacacagagtctta
ggttgcccagactggcctttaacttgcttcatagctgaggatgacgggaa
ctcctgactgtcacttcaccctccataagggcttggattataggagtgtg
ctacaaaaaccagtttgatggctttattatcatttcattaatgttttcct
attcatcagaatcttgtatctgcaccatcatcaatggatgaaaataattc
aacatgtaattataattaaaagggaagaagaaaatgcaaaactatctggc
atatacacgttcagcttttacgagggtatatcaaaatctgtttaaaagtt
agggcctaacacactactttccctcctcaatattatgttactcttattta
agacatccttttcctttctcccctgcccccctttaaagacagggcctcct
atatcctaggctagccttgaacttacttatgtgcctaaggctggtcttga
agttctaattctcttgcttccatcccttatgctgagattataggtgtgcc
atcatgccttggatggggatgggatggggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_37119230_37120388
seq2: B6Ng01-272G24.b_46_1208 (reverse)

seq1  ATTTCATGAACCATTCAAGTTTATGAGAATG--AACAGA-CAGACAGAGG  47
      ||||||   ||||||||||||||||||||||  | |||| ||||||||||
seq2  ATTTCAATGACCATTCAAGTTTATGAGAATGGAACCAGACCAGACAGAGG  50

seq1  CACCT-AGGGT-GTGACATTTAAGACTCAATCTGGTACAAGAATGAATCA  95
      ||||| ||||| ||||||||| ||||||||||| ||||||| ||||||||
seq2  CACCTAAGGGTGGTGACATTT-AGACTCAATCT-GTACAAG-ATGAATCA  97

seq1  AACTGTAACTTTCCTCGAACCCCTTGAA-TTAGATGTTCTACAGAAGG-C  143
      |||||| ||||||||||||||||||||| ||||||||||||||||||| |
seq2  AACTGT-ACTTTCCTCGAACCCCTTGAATTTAGATGTTCTACAGAAGGCC  146

seq1  CAACCAAAGGCTTAAAAATCTAATTAC-GTTCTGAACCTAAATTTATTAG  192
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  CAACCAAAGGCTTAAAAATCTAATTACGGTTCTGAACCTAAATTTATTAG  196

seq1  TTGAATGGTTACCATGGGGATCATTTTCACACCATATTGCTTCCCAAATG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGGTTACCATGGGGATCATTTTCACACCATATTGCTTCCCAAATG  246

seq1  TACACACAGAATTAGGGTGCTAGTTAGCTAAGTATGTTATGAGCCTTCAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACAGAATTAGGGTGCTAGTTAGCTAAGTATGTTATGAGCCTTCAC  296

seq1  TCTGCAAAGATCTTATGTGGCAAAAAGGGGCACCCATTTCTTTCCAGAAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAAAGATCTTATGTGGCAAAAAGGGGCACCCATTTCTTTCCAGAAA  346

seq1  AGAAAGAAAAGGTAATGTCTCAGTCCTGGCAACAGTTAATCCATGGGATA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAAAAGGTAATGTCTCAGTCCTGGCAACAGTTAATCCATGGGATA  396

seq1  AAATAGTGTTTGAATATATTTCTTCCTCTAGGAAATATATTGACTCACTG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTGTTTGAATATATTTCTTCCTCTAGGAAATATATTGACTCACTG  446

seq1  TTCTTAAAAATTATTAGTTTGTTCTGTATAGTTTCATAAATTTTTAAAAT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAAAAATTATTAGTTTGTTCTGTATAGTTTCATAAATTTTTAAAAT  496

seq1  AACTTTTCAGGTTTCTTCTTCCAGTATTTGAATTCCTCAAAGAAGCACAG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCAGGTTTCTTCTTCCAGTATTTGAATTCCTCAAAGAAGCACAG  546

seq1  ATCTTTCTCCTATCACTCCCAACCCTTTCCAGTTTCATGATTGAACATTT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTCTCCTATCACTCCCAACCCTTTCCAGTTTCATGATTGAACATTT  596

seq1  TTACATTCAGTAGGGGAAAAAATGAACCTAATATTATAATGATTACATAT  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTCAGTAGGGGAAAAAATGAACCTAATATTATAATGATTACATAT  646

seq1  CCCATGTTCTCATACACAGGTAATAAATACAGAAATCAAGGATAAGATGC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTTCTCATACACAGGTAATAAATACAGAAATCAAGGATAAGATGC  696

seq1  TGTTAGTCACTTTTAAGTGCTTTCCCAGTTTGAAAGATTTTATGCACTCA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTCACTTTTAAGTGCTTTCCCAGTTTGAAAGATTTTATGCACTCA  746

seq1  TAGAAATGTTTTCCTTTCTGCCTCACTGGGTTGCACTTTTGCTTTGATAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATGTTTTCCTTTCTGCCTCACTGGGTTGCACTTTTGCTTTGATAT  796

seq1  CTGAGAAAGACGAGGAGGGTAATGAAATATATCTCTTGAGCCAAGAAACT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAAGACGAGGAGGGTAATGAAATATATCTCTTGAGCCAAGAAACT  846

seq1  AGAGAAAAATCATAATTTTAAGAAAAAAATGGTGGCGATGTTTAAATAGA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAATCATAATTTTAAGAAAAAAATGGTGGCGATGTTTAAATAGA  896

seq1  TTACATTTCATCTGGCTGCTCTTAATTACAGCTACCCGCCCACAAGCTGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTCATCTGGCTGCTCTTAATTACAGCTACCCGCCCACAAGCTGT  946

seq1  TGCAAAGGTCCCCTGGAGACAACTTCCAAGCTATTTATGGGCTCTTCAGA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGGTCCCCTGGAGACAACTTCCAAGCTATTTATGGGCTCTTCAGA  996

seq1  GGAGAAGCTATGAGAATGTCTTTTTCATGCTATTCTCTTTAAACTTTCAT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGCTATGAGAATGTCTTTTTCATGCTATTCTCTTTAAACTTTCAT  1046

seq1  TTTCAATAGCCCACAATTAGCTCCCTGGAATGAGGATGTATATTGGGCTA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATAGCCCACAATTAGCTCCCTGGAATGAGGATGTATATTGGGCTA  1096

seq1  AATATGCAGGGGTCATAATTTTCTGACCTACTTCCTCCTTCACGTCCAAA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCAGGGGTCATAATTTTCTGACCTACTTCCTCCTTCACGTCCAAA  1146

seq1  TAATGTGGAAGGAATTC  1159
      |||||||||||||||||
seq2  TAATGTGGAAGGAATTC  1163


seq1: chr10_36987167_36987848
seq2: B6Ng01-272G24.g_64_745

seq1  GAATTCTCTAGTGCTTCTTTAAACAAACAAACGAACGAACAAACAAACAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGTGCTTCTTTAAACAAACAAACGAACGAACAAACAAACAA  50

seq1  TCAGGAGATGCCTTTTAATTACCAAGGGGTTGTCCACAGTTGCTAAGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAGATGCCTTTTAATTACCAAGGGGTTGTCCACAGTTGCTAAGCTA  100

seq1  CAACTGTAAAATTTGATGGCTCTTTTGTTCTTCTTAGACACAGAGTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTAAAATTTGATGGCTCTTTTGTTCTTCTTAGACACAGAGTCTTA  150

seq1  GGTTGCCCAGACTGGCCTTTAACTTGCTTCATAGCTGAGGATGACGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCCCAGACTGGCCTTTAACTTGCTTCATAGCTGAGGATGACGGGAA  200

seq1  CTCCTGACTGTCACTTCACCCTCCATAAGGGCTTGGATTATAGGAGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGACTGTCACTTCACCCTCCATAAGGGCTTGGATTATAGGAGTGTG  250

seq1  CTACAAAAACCAGTTTGATGGCTTTATTATCATTTCATTAATGTTTTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAAACCAGTTTGATGGCTTTATTATCATTTCATTAATGTTTTCCT  300

seq1  ATTCATCAGAATCTTGTATCTGCACCATCATCAATGGATGAAAATAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCAGAATCTTGTATCTGCACCATCATCAATGGATGAAAATAATTC  350

seq1  AACATGTAATTATAATTAAAAGGGAAGAAGAAAATGCAAAACTATCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTAATTATAATTAAAAGGGAAGAAGAAAATGCAAAACTATCTGGC  400

seq1  ATATACACGTTCAGCTTTTACGAGGGTATATCAAAATCTGTTTAAAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACACGTTCAGCTTTTACGAGGGTATATCAAAATCTGTTTAAAAGTT  450

seq1  AGGGCCTAACACACTACTTTCCCTCCTCAATATTATGTTACTCTTATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCCTAACACACTACTTTCCCTCCTCAATATTATGTTACTCTTATTTA  500

seq1  AGACATCCTTTTCCTTTCTCCCCTGCCCCCCTTTAAAGACAGGGCCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCCTTTTCCTTTCTCCCCTGCCCCCCTTTAAAGACAGGGCCTCCT  550

seq1  ATATCCTAGGCTAGCCTTGAACTTACTTATGTGCCTAAGGCTGGTCTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTAGGCTAGCCTTGAACTTACTTATGTGCCTAAGGCTGGTCTTGA  600

seq1  AGTTCTAATTCTCTTGCTTCCATCCCTTATGCTGAGATTATAGGTGTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTAATTCTCTTGCTTCCATCCCTTATGCTGAGATTATAGGTGTGCC  650

seq1  ATCATGCCTTGGATGGGGATGGGATGGGGTGG  682
      ||||||||||||||||||||||||||||||||
seq2  ATCATGCCTTGGATGGGGATGGGATGGGGTGG  682


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