BAC Information

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BAC

Clone NameB6Ng01-272J19
Chromosome10 (Build37)
Map Location 127,767,778 - 127,941,947
singlet/doubletdoublet
Overlap geneCs, Coq10a, Ankrd52, Slc39a5, Obfc2b, Rnf41, Smarcc2, Myl6, Myl6b
Upstream geneGli1, Inhbe, Inhbc, R3hdm2, Stac3, Ndufa4l2, Shmt2, Nxph4, Lrp1, LOC100043054, Stat6, Nab2, BC030440, Myo1a, Tac2, Zbtb39, Admr, Rdh1, Rdh9, Rdh16, AY053573, Rdhs, BC089597, Rdh7, Sdro, LOC382468, Hsd17b6, LOC100043618, Prim1, LOC100043077, Naca, Ptges3, Atp5b, Baz2a, LOC100043085, Rbms2, LOC100043624, Gls2, Spryd4, Mip, Timeless, Apon, Apof, Stat2, Il23a, Usp52, Tmem4
Downstream geneMbc2, Zc3h10, Rpl41, LOC668453, Pa2g4, Erbb3, LOC100043114, LOC668459, Rps26, Ikzf4, Suox, EG622589, Rab5b, Cdk2, Si, Dgka, LOC100043669, Wibg, LOC622655, Mmp19, 1110012D08Rik, Dnajc14, Ormdl2, 1110005A23Rik, Gdf11, Cd63, Rdh5, Bloc1s1, Itga7, Mettl7b, Olfr9, Olfr763, EG622733, EG546487, Olfr765, Olfr768, Olfr769, Olfr770, Olfr771, Olfr772, Olfr773-ps1, LOC624925, Olfr774, Olfr1518, Olfr776, Olfr777, Olfr778-ps1, LOC544749, Olfr780, Olfr781, Olfr782, Olfr783-ps1, Olfr784, EG546488, Olfr786, Olfr787, Olfr788, Olfr789-ps1, Olfr790
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-272J19.bB6Ng01-272J19.g
ACCGA074394GA074395
length8691,179
definitionB6Ng01-272J19.b B6Ng01-272J19.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(127,941,088 - 127,941,947)(127,767,778 - 127,768,952)
sequence
gccagaacaggaagtaagtgtttgaagctgaagctgtgccccctctgtgg
gctactggaagccacaatgtgccaggatgctgggcaaaagctgcctctga
tcgttatctaagcacatgaaagctgactggcaagttgggctcacagctcc
tgttgtggctcctgtctgtgatcccgacactcggggaggctaaggcagaa
gggtcgtcgcagtttgaggacagagtgggctgcatagtgagttccagggc
agcctggtacggtggcaaatactgagatcttagcatacgggaggcgaagg
cctaaggaccagaagttcaaggtcaccctcaggtacataaccagttccag
gcctgccctgtctgagaacaaacaaaaataaaatacttgcaggccaaatt
ccaaatatggatgaattttaaacaggagatgatgtaaggggaatgagaag
aggtgggtgggcaaaacagcccatcggttacagccacttgccaccgacca
taacaacctgaggttgacactcagagtccaccaggtagaaacaacgaacc
aattctcacaagctgaccttcagccttagcacctgttcacctacacacac
acacacacacacacacacacacacacacacacacacacacacaaagtatc
ttttgaaatgatgactgttattaaaagcttaaattacattatctatgtga
aaacaagatttccaggccctaacacagacagaggagcaatctacaagttt
gttgttataagaagtttcctaggagatttttaaaacaacagcaaagtctg
tgaccttccgcctttagttaactgcaataggaaaccagctttacttgatt
aatatcaacctttttctat
gaattcactccgtagactaggctaatttcaaactgggagatttgtctgac
tctgccccccaagtgctgggactacaagggtgcaccaccatgcctggcag
agcctatattcctaactttgcaaatcaagttctagtttaagcattggatg
ccttcttatttatttatcattaacgttgtaaagtttcagcaaacatttcc
ataacagtccggatgcaaccaggaaactttattacatgaaaaagtagtcc
tggcaggagtgatggacccttggtttagaacatttgctcttgcagaggcc
ctggggttggccccccgcacccacatggtggctcacagctgtctgtaact
ccagtttcagaggatctgacactttcttctaacttgcgtgggcaatggac
actcatgtggctcacataaacaaacaaacgttttttagaaagaaaatgca
gaccagcagtatcacccagtgtcacatgcaggtagttctagctaagctag
aggagagctaggaggatacttgaaatgatgagttggaaaccaacctatgc
aatgaaacaaaagcctactagattttgttattgaatcacatgggacagcg
gaggcaggaaggtctcaaattcaaaatcaacctgtaatatcttttttttt
tttaaatagagtttctttgtacagccatggctgtcctggaactcactctg
tagaccaagctggcctcaaactcgaaggtccaccagcctctgcctcccaa
gtgctgggatcaaagatgtgagccaccatgcccaactgacaatgttttaa
agaggtcaagcccacagctttgcccatgctaagcaagcgttctaccgtta
agctatgtatgcccagcttagaactctttgctgttgagaaagagcagaca
caaattctttactatgatttttgtttgtttgaggcaaggtcttgctctac
actgaggctgatacagtgtgtctacatagtgccagctcttctgggattct
gtgactccagctgatggtttaacctcgaggactttctgctcaacttccta
aatgatgaatcacaaaatatataccaccatgacagccggtgatttcactt
gaactttggcgacctctgaatttttctccacaacataatgtttttagttc
tggattctggtggtggaatatgtgcacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_127941088_127941947
seq2: B6Ng01-272J19.b_56_924 (reverse)

seq1  ATAGAAAA--GTTGGTTTTAA-CAAGTAAAGCTGGTTTCCTATTGCAGTT  47
      ||||||||  |||| | |||| ||||||||||||||||||||||||||||
seq2  ATAGAAAAAGGTTGATATTAATCAAGTAAAGCTGGTTTCCTATTGCAGTT  50

seq1  AACT-AAGGCGG-AGGTCACAGACTTTGCTGTTGTTTT-AAAATCTCCTA  94
      |||| ||||||| ||||||||||||||||||||||||| |||||||||||
seq2  AACTAAAGGCGGAAGGTCACAGACTTTGCTGTTGTTTTAAAAATCTCCTA  100

seq1  GG-AACTTCTTATAACAACAAACTTGTAGATTGCTCCTCTGTCTGTGTTA  143
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTTCTTATAACAACAAACTTGTAGATTGCTCCTCTGTCTGTGTTA  150

seq1  GGGCCTGGAAATCTTG-TTTCACATAGATAATGTAATCTAAGC-TTTAAT  191
      |||||||||||||||| |||||||||||||||||||| ||||| ||||||
seq2  GGGCCTGGAAATCTTGTTTTCACATAGATAATGTAATTTAAGCTTTTAAT  200

seq1  AACAGTCATCATTTCAAAAGATACTTTGTGTGTGTGTGTGTGTGTGTGTG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTCATCATTTCAAAAGATACTTTGTGTGTGTGTGTGTGTGTGTGTG  250

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTGAACAGGTGCTAAGGCTGA  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTAGGTGAACAGGTGCTAAGGCTGA  300

seq1  AGGTCAGCTTGTGAGAATTGGTTCGTTGTTTCTACCTGGTGGACTCTGAG  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCAGCTTGTGAGAATTGGTTCGTTGTTTCTACCTGGTGGACTCTGAG  350

seq1  TGTCAACCTCAGGTTGTTATGGTCGGTGGCAAGTGGCTGTAACCGATGGG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAACCTCAGGTTGTTATGGTCGGTGGCAAGTGGCTGTAACCGATGGG  400

seq1  CTGTTTTGCCCACCCACCTCTTCTCATTCCCCTTACATCATCTCCTGTTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTTGCCCACCCACCTCTTCTCATTCCCCTTACATCATCTCCTGTTT  450

seq1  AAAATTCATCCATATTTGGAATTTGGCCTGCAAGTATTTTATTTTTGTTT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCATCCATATTTGGAATTTGGCCTGCAAGTATTTTATTTTTGTTT  500

seq1  GTTCTCAGACAGGGCAGGCCTGGAACTGGTTATGTACCTGAGGGTGACCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAGACAGGGCAGGCCTGGAACTGGTTATGTACCTGAGGGTGACCT  550

seq1  TGAACTTCTGGTCCTTAGGCCTTCGCCTCCCGTATGCTAAGATCTCAGTA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTCTGGTCCTTAGGCCTTCGCCTCCCGTATGCTAAGATCTCAGTA  600

seq1  TTTGCCACCGTACCAGGCTGCCCTGGAACTCACTATGCAGCCCACTCTGT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCACCGTACCAGGCTGCCCTGGAACTCACTATGCAGCCCACTCTGT  650

seq1  CCTCAAACTGCGACGACCCTTCTGCCTTAGCCTCCCCGAGTGTCGGGATC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAACTGCGACGACCCTTCTGCCTTAGCCTCCCCGAGTGTCGGGATC  700

seq1  ACAGACAGGAGCCACAACAGGAGCTGTGAGCCCAACTTGCCAGTCAGCTT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACAGGAGCCACAACAGGAGCTGTGAGCCCAACTTGCCAGTCAGCTT  750

seq1  TCATGTGCTTAGATAACGATCAGAGGCAGCTTTTGCCCAGCATCCTGGCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGCTTAGATAACGATCAGAGGCAGCTTTTGCCCAGCATCCTGGCA  800

seq1  CATTGTGGCTTCCAGTAGCCCACAGAGGGGGCACAGCTTCAGCTTCAAAC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGGCTTCCAGTAGCCCACAGAGGGGGCACAGCTTCAGCTTCAAAC  850

seq1  ACTTACTTCCTGTTCTGGC  860
      |||||||||||||||||||
seq2  ACTTACTTCCTGTTCTGGC  869

seq1: chr10_127767778_127768952
seq2: B6Ng01-272J19.g_64_1242

seq1  GAATTCACTCCGTAGACTAGGCTAATTTCAAACTGGGAGATTTGTCTGAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCCGTAGACTAGGCTAATTTCAAACTGGGAGATTTGTCTGAC  50

seq1  TCTGCCCCCCAAGTGCTGGGACTACAAGGGTGCACCACCATGCCTGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCCCCCAAGTGCTGGGACTACAAGGGTGCACCACCATGCCTGGCAG  100

seq1  AGCCTATATTCCTAACTTTGCAAATCAAGTTCTAGTTTAAGCATTGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTATATTCCTAACTTTGCAAATCAAGTTCTAGTTTAAGCATTGGATG  150

seq1  CCTTCTTATTTATTTATCATTAACGTTGTAAAGTTTCAGCAAACATTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTTATTTATTTATCATTAACGTTGTAAAGTTTCAGCAAACATTTCC  200

seq1  ATAACAGTCCGGATGCAACCAGGAAACTTTATTACATGAAAAAGTAGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGTCCGGATGCAACCAGGAAACTTTATTACATGAAAAAGTAGTCC  250

seq1  TGGCAGGAGTGATGGACCCTTGGTTTAGAACATTTGCTCTTGCAGAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGGAGTGATGGACCCTTGGTTTAGAACATTTGCTCTTGCAGAGGCC  300

seq1  CTGGGGTTGGCCCCCCGCACCCACATGGTGGCTCACAGCTGTCTGTAACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGTTGGCCCCCCGCACCCACATGGTGGCTCACAGCTGTCTGTAACT  350

seq1  CCAGTTTCAGAGGATCTGACACTTTCTTCTAACTTGCGTGGGCAATGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTTCAGAGGATCTGACACTTTCTTCTAACTTGCGTGGGCAATGGAC  400

seq1  ACTCATGTGGCTCACATAAACAAACAAACGTTTTTTAGAAAGAAAATGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATGTGGCTCACATAAACAAACAAACGTTTTTTAGAAAGAAAATGCA  450

seq1  GACCAGCAGTATCACCCAGTGTCACATGCAGGTAGTTCTAGCTAAGCTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGCAGTATCACCCAGTGTCACATGCAGGTAGTTCTAGCTAAGCTAG  500

seq1  AGGAGAGCTAGGAGGATACTTGAAATGATGAGTTGGAAACCAACCTATGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGCTAGGAGGATACTTGAAATGATGAGTTGGAAACCAACCTATGC  550

seq1  AATGAAACAAAAGCCTACTAGATTTTGTTATTGAATCACATGGGACAGCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAACAAAAGCCTACTAGATTTTGTTATTGAATCACATGGGACAGCG  600

seq1  GAGGCAGGAAGGTCTCAAATTCAAAATCAACCTGTAATATCTTTTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGAAGGTCTCAAATTCAAAATCAACCTGTAATATCTTTTTTTTT  650

seq1  TTTAAATAGAGTTTCTTTGTACAGCCATGGCTGTCCTGGAACTCACTCTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAGAGTTTCTTTGTACAGCCATGGCTGTCCTGGAACTCACTCTG  700

seq1  TAGACCAAGCTGGCCTCAAACTCGAAGGTCCACCAGCCTCTGCCTCCCAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAAGCTGGCCTCAAACTCGAAGGTCCACCAGCCTCTGCCTCCCAA  750

seq1  GTGCTGGGATCAAAGATGTGAGCCACCATGCCCAACTGACAATGTTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATCAAAGATGTGAGCCACCATGCCCAACTGACAATGTTTTAA  800

seq1  AGAGGTCAAGCCCACAGCTTTGCCCATGCTAAGCAAGCGTTCTACCGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCAAGCCCACAGCTTTGCCCATGCTAAGCAAGCGTTCTACCGTTA  850

seq1  AGCTATGTATGCCCAGCTTAGAACTCTTTGCTGTTGAGAAAGAGCAGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATGTATGCCCAGCTTAGAACTCTTTGCTGTTGAGAAAGAGCAGACA  900

seq1  CAAAATTCTTTACTATGATTTTTGTTTGTTTGAGGCAAGGTCTTGCTCTA  950
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AAATTCTTTACTATGATTTTTGTTTGTTTGAGGCAAGGTCTTGCTCTA  949

seq1  CACTGAGGCTGATACAGTGTGTCTACATAGTGCCAGCTCTTCT-GGATTC  999
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CACTGAGGCTGATACAGTGTGTCTACATAGTGCCAGCTCTTCTGGGATTC  999

seq1  TGTGACTCCCAAGCTGAT-GTTTAA-CTCGAGGACTTTCTGCTTCAACTT  1047
      |||||||||  ||||||| |||||| |||||||||||||||| |||||||
seq2  TGTGACTCC--AGCTGATGGTTTAACCTCGAGGACTTTCTGC-TCAACTT  1046

seq1  CCTAAATGATGAAATCAC-AAATATATACCACCATGAACAGC--GTGATT  1094
      ||||||||||| |||||| ||||||||||||||||| |||||  ||||||
seq2  CCTAAATGATG-AATCACAAAATATATACCACCATG-ACAGCCGGTGATT  1094

seq1  TCACTTG-ACTTTTGCGA-CTCTGATTTTATAT-TAAAAAATAATGTTTT  1141
      ||||||| ||||| |||| |||||| ||| | |  | || ||||||||||
seq2  TCACTTGAACTTTGGCGACCTCTGAATTTTTCTCCACAACATAATGTTTT  1144

seq1  TAGTTTCTGTGTTTCT-GTG--TGAGTATGTGCACCT  1175
      ||| ||||| | |||| |||   || |||||||||||
seq2  TAG-TTCTG-GATTCTGGTGGTGGAATATGTGCACCT  1179