BAC Information

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BAC

Clone NameB6Ng01-273E15
Chromosome10 (Build37)
Map Location 66,410,939 - 66,542,664
singlet/doubletdoublet
Overlap geneReep3
Upstream gene1700023F02Rik, 4930407I19Rik
Downstream geneJmjd1c, Nrbf2, Egr2, Gm237, LOC100040081, LOC100039618, Zfp365, Plekhk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273E15.bB6Ng01-273E15.g
ACCGA074901GA074902
length1,144598
definitionB6Ng01-273E15.b B6Ng01-273E15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,541,515 - 66,542,664)(66,410,939 - 66,411,530)
sequence
gaattcattgaagtaacaaactctgaacttacatagttcttctccacaca
ttaaaaagaaaacagcagatctctggtcagcaaagggctctcatcttttt
ttttttttttttttttttttttttaaagattttatttatttatttattat
atgtaagtacactgtagctgtcttcagacactccaaaagagggcgtcaga
tctcgtcacggatggttgtgagccaccatgtggttgctgggatttgaact
tccgaccttcggaagagcagtcgggtgctcttacccactgagccatctca
ccagcccggctctcatctttcattgtgttgtatttagcgtgccttaaatt
aatttctctagctgtcttatttttgcaaacagaaggacacgaatcagcta
ttggaaagaagtgaatgttcgctattgaatagttactgtgggtacttctt
cccggatgtgtttctgtcaaaagataaaacactgtctggattgtgttttt
ctttggtctagccatggaatgactttatttccaatcgggtagcaaaggaa
gtgagaggctgactttgaacaaagacttgcaggcggtgggggccttggct
gctcaagagctccacttagcctgaagagagtcccagtaaagctgcctacc
aagggcaagccccaaggcttcctgggacagctgtggggttgcaggtggct
ttaacagagcaatggtgtcacactgagcaggtggggagccaggttttgag
aagagaggggcaaggggccctgtcggatcttgtgttttaaaagatctctg
ggctgtggagggcagactggggacaaaggaggagcttcaatagcctcatt
tagtgaactagtcaagcgaatggtaggtaacaagggccccaggtggcggc
agtggtcagagtcaggatttatgttttaaagtagaagctaggagggcagc
ttgacagtttggctgtgagtatttcagagtagaaccggatgaggttcata
acatagggattcatcgatgtcagaagaggggtgttaggtcttatctctgc
atgagaaacacgcagctctctcagaatagtgtggcagcaaaaaagcagcc
tgtatgtagatgatgttacttcgagccttaggaatgactgtccg
gaattctctttttttaaagttttttttttttttttggtttttcaagacag
ggtttctctgtataaccctggctgtcctagaactcactctgtagaccagg
ctagcctcaaactcagaaatctgcctgcctctgcctcccaagtgctggga
ttaaaggcatgcgccaccactgtccagctatttatttatttcatctttat
gaatacactgtagctgtcttcagacacaccagaggagggcatcagatcct
atttatagattgttgtgagccaccatgtggtagctgagacttgagcttgg
gaccttcagaagagcagctagtgctcttaactgctgagccatctctccag
tcctagctctttttttttttttttttttttttttttatattccgccttag
gcctgaaaagttgagcttttaaaaactatgggggaggtagaagccatcaa
atgtagatgtcttgtcctgttgggtagggtgcttgaccctgaaaagccac
acagattttcttccaaggaccactctggggtgttaacacacattagggta
caaaattttaatttgccctttattttttaatcggctataatatatccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_66541515_66542664
seq2: B6Ng01-273E15.b_48_1191 (reverse)

seq1  CGGACAGTCATTTCCCCTAATGCTCGAATGTACCATCATCCTACCATAAC  50
      ||||||||||||   ||||| ||||||| ||| |||||| ||| ||||  
seq2  CGGACAGTCATT---CCTAAGGCTCGAA-GTAACATCAT-CTA-CATACA  44

seq1  GGCTTGCTTTTTTGCTGCCACACTA-TCTG-GGGAGCCTTGCGTGTTTCT  98
      ||| ||||||||||||||||||||| |||| | ||||  |||||||||||
seq2  GGC-TGCTTTTTTGCTGCCACACTATTCTGAGAGAGC--TGCGTGTTTCT  91

seq1  CATGCAGAGATAAGACCTAACA-CCCTCTTCTTGACATCGATGAATTCCC  147
      |||||||||||||||||||||| |||||||| ||||||||||||| ||||
seq2  CATGCAGAGATAAGACCTAACACCCCTCTTC-TGACATCGATGAA-TCCC  139

seq1  TATGTTATGAA-CTCATCCGGTTCCTACTCTG-AATACTCACAGCCAAAC  195
      ||||||||||| ||||||||||| |||||||| |||||||||||||||||
seq2  TATGTTATGAACCTCATCCGGTT-CTACTCTGAAATACTCACAGCCAAAC  188

seq1  TGTCAAGCTGCCCTCCTAGCTTCTACTTTAAAACATAAATCCTGACTCTG  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAGCTGCCCTCCTAGCTTCTACTTTAAAACATAAATCCTGACTCTG  238

seq1  ACCACTGCCGCCACCTGGGG-CCTTGTTACCTACCATTCGCTTGACTAGT  294
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACCACTGCCGCCACCTGGGGCCCTTGTTACCTACCATTCGCTTGACTAGT  288

seq1  TCACTAAATGAGGCTATTGAAGCTCCTCCTTTGTCCCCAGTCTGCCCTCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTAAATGAGGCTATTGAAGCTCCTCCTTTGTCCCCAGTCTGCCCTCC  338

seq1  ACAGCCCAGAGATCTTTTAAAACACAAGATCCGACAGGGCCCCTTGCCCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCCAGAGATCTTTTAAAACACAAGATCCGACAGGGCCCCTTGCCCC  388

seq1  TCTCTTCTCAAAACCTGGCTCCCCACCTGCTCAGTGTGACACCATTGCTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTCAAAACCTGGCTCCCCACCTGCTCAGTGTGACACCATTGCTC  438

seq1  TGTTAAAGCCACCTGCAACCCCACAGCTGTCCCAGGAAGCCTTGGGGCTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAGCCACCTGCAACCCCACAGCTGTCCCAGGAAGCCTTGGGGCTT  488

seq1  GCCCTTGGTAGGCAGCTTTACTGGGACTCTCTTCAGGCTAAGTGGAGCTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGGTAGGCAGCTTTACTGGGACTCTCTTCAGGCTAAGTGGAGCTC  538

seq1  TTGAGCAGCCAAGGCCCCCACCGCCTGCAAGTCTTTGTTCAAAGTCAGCC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGCAGCCAAGGCCCCCACCGCCTGCAAGTCTTTGTTCAAAGTCAGCC  588

seq1  TCTCACTTCCTTTGCTACCCGATTGGAAATAAAGTCATTCCATGGCTAGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTCCTTTGCTACCCGATTGGAAATAAAGTCATTCCATGGCTAGA  638

seq1  CCAAAGAAAAACACAATCCAGACAGTGTTTTATCTTTTGACAGAAACACA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAAAAACACAATCCAGACAGTGTTTTATCTTTTGACAGAAACACA  688

seq1  TCCGGGAAGAAGTACCCACAGTAACTATTCAATAGCGAACATTCACTTCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGGGAAGAAGTACCCACAGTAACTATTCAATAGCGAACATTCACTTCT  738

seq1  TTCCAATAGCTGATTCGTGTCCTTCTGTTTGCAAAAATAAGACAGCTAGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAATAGCTGATTCGTGTCCTTCTGTTTGCAAAAATAAGACAGCTAGA  788

seq1  GAAATTAATCTAAGGCACGCTAAATACAACACAATGAAAGATGAGAGCCG  844
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAATTTAAGGCACGCTAAATACAACACAATGAAAGATGAGAGCCG  838

seq1  GGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAG  888

seq1  GTCGGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGAAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCGTG  938

seq1  ACGAGATCTGACGCCCTCTTCTGGAGTGTCTGAAGACAGCTACAGTGTAC  994
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ACGAGATCTGACGCCCTCTTTTGGAGTGTCTGAAGACAGCTACAGTGTAC  988

seq1  TTACATATAATAAATAAATAAATAAAATCTTTAAAAAAAAAAAAAAAAAA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATATAATAAATAAATAAATAAAATCTTTAAAAAAAAAAAAAAAAAA  1038

seq1  AAAAAAAAAAAGATGAGAGCCCTTTGCTGACCAGAGATCTGCTGTTTTCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGATGAGAGCCCTTTGCTGACCAGAGATCTGCTGTTTTCT  1088

seq1  TTTTAATGTGTGGAGAAGAACTATGTAAGTTCAGAGTTTGTTACTTCAAT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATGTGTGGAGAAGAACTATGTAAGTTCAGAGTTTGTTACTTCAAT  1138

seq1  GAATTC  1150
      ||||||
seq2  GAATTC  1144

seq1: chr10_66410939_66411530
seq2: B6Ng01-273E15.g_66_660

seq1  GAATTCTCTTTTTTTAAAGTTTTTTTTTTTTTTTTGGTTTTTCAAGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTTTTTTAAAGTTTTTTTTTTTTTTTTGGTTTTTCAAGACAG  50

seq1  GGTTTCTCTGTATAACCCTGGCTGTCCTAGAACTCACTCTGTAGACCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGTATAACCCTGGCTGTCCTAGAACTCACTCTGTAGACCAGG  100

seq1  CTAGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTCAAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGA  150

seq1  TTAAAGGCATGCGCCACCACTGTCCAGCTATTTATTTATTTCATCTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCATGCGCCACCACTGTCCAGCTATTTATTTATTTCATCTTTAT  200

seq1  GAATACACTGTAGCTGTCTTCAGACACACCAGAGGAGGGCATCAGATCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACACTGTAGCTGTCTTCAGACACACCAGAGGAGGGCATCAGATCCT  250

seq1  ATTTATAGATTGTTGTGAGCCACCATGTGGTAGCTGAGACTTGAGCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAGATTGTTGTGAGCCACCATGTGGTAGCTGAGACTTGAGCTTGG  300

seq1  GACCTTCAGAAGAGCAGCTAGTGCTCTTAACTGCTGAGCCATCTCTCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCAGAAGAGCAGCTAGTGCTCTTAACTGCTGAGCCATCTCTCCAG  350

seq1  TCCTAGCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTATATTCTGCCTTAG  400
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCCTAGCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTATATTCCGCCTTAG  400

seq1  GCCTGAAGAGTTGAGCTTTTAGAAACTATGGGGGAGGTAGAAGCGATCAA  450
      ||||||| ||||||||||||| |||||||||||||||||||||| |||||
seq2  GCCTGAAAAGTTGAGCTTTTAAAAACTATGGGGGAGGTAGAAGCCATCAA  450

seq1  ATGTAGATGTCTTGTCCTGTTGGGTAGGATGCTTGACCCTGAAGAGCCAC  500
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  ATGTAGATGTCTTGTCCTGTTGGGTAGGGTGCTTGACCCTGAAAAGCCAC  500

seq1  ACAGATTTCCTTCCAAGGACCACTCTGGTGTGTT-ACACACATTAGGTTA  549
      |||||||| ||||||||||||||||||| ||||| |||||||||||| ||
seq2  ACAGATTTTCTTCCAAGGACCACTCTGGGGTGTTAACACACATTAGGGTA  550

seq1  C-AAATTTTAATTTG-CCTTTATTTTTT-ATCTGCTATATATATAT  592
      | ||||||||||||| |||||||||||| ||| |||||| ||||||
seq2  CAAAATTTTAATTTGCCCTTTATTTTTTAATCGGCTATA-ATATAT  595