BAC Information

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BAC

Clone NameB6Ng01-273J04
Chromosome10 (Build37)
Map Location 99,402,491 - 99,403,684
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp2b1, Wdr51b, Galnt4, Dusp6, LOC100042222, Gad1-ps, LOC100042232, LOC667502, Csl, LOC100042246
Downstream geneKitl, LOC100043208, LOC100043211, EG667532, LOC670007, LOC235966, LOC667556, LOC100043224, LOC100043227, LOC100043231, LOC100043235, LOC667580, LOC100043239, LOC100043242, LOC100043244, LOC667607, LOC100043247, EG213051, Tmtc3, 4930430F08Rik, 1700017N19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-273J04.bB6Ng01-273J04.g
ACCGA075112GA075113
length1,1901,185
definitionB6Ng01-273J04.b B6Ng01-273J04.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcaccattcattttgtcccccttgccagcaagcagaagttgcaaaa
tataaagataaataagagccacctggaatgatagctggacaaaccttcag
ctaacctgctgatttaggggtctcaacaatgtagccctctagcctgtttt
tgaagggagcacccagttggtctagatggagatgttttggggaaacaatg
ggccaaaataattctggaagaacgtgaacatgatgctattgaacagcctg
ttttaaaagactttctgggtccaactggtgaattttctggaatcccagtc
atacacataacagtgaataatgtttttaaaatgggggaaaaaaagaaaca
aattatttgaaaggaagcagcctttcctagcctctgagtgctataagaag
cattagtcggtgttgaatggaaggcaaataagaacccattggttgattat
aaagcattacagagatttcattaagcctaattacatggcatgaaatccaa
ttcttacctagagtcttggtgacggtaaatctatagattatagtgtagat
tagtttaataagattctgatgtacgttccaacttgtttgctgtcaactca
gcattagatacgcatagagatggcaacatgccatcagttgtaaatagtga
tgtgcctgccctctactcagaaacccaagacatgcctgtcacctgtcctg
tcctagtacatttcggagactgttgaagggaaaggtggaaagtggaacct
tgtttggcagcaactggcagccaggcacttgtttcttccttctgagaaac
tgaggaatggaaagaagaatagaaaacatccaaaatatttccacagacca
cacagtggtattgctcaaacccagtcaaccagctgctggtaatgttgcca
gctttgaggagctggcagtctggtatcagcacctggaaaaaggatgcaga
catacctactgttgggattcatgccatacgataactagagagtgaatttg
aattgacacatgctagctggctctactgttagtttcagaagttttcagct
ctgtggaactaatattcccaagaaaaaaaataaaccccttatcctttcga
tcactcagtcattgattgcccatgagatccgaggcctccacagaggcact
agaaacgtaattgagatgccaggccaattgggaaaaatgc
gaattcctttggtgaagaacagcaatgtggaagtataagctgagtaaacc
ctttcctccccaatttgcttcttggtcatgatgttttatgcaggagtaca
attacatttactgattttcatatgttgaaccatacctgcatctctgggat
acagcatgcctgatcatggtggatgatctttttgatttattgttggattt
ggtttgaagcattttattgagtcttttcgaatctctgttcacaattgaaa
ttgatctgtgataacctttttttgtttagtcattatgtggtttttggtat
cagagtaactgtggcctcttaaaatgaattggaccatgttccttctgttt
ctattttgggaaataattgaagaggtatcaactttaactcttctttgaaa
gtctggtaatattctttgctaaaaccatctggccaaaagtgtttgtttgt
ttgtttctttgtttgcaagacttttaatgactgtttctatttattacagg
ttataggtctactaaaattgacttaacttggaaagtagtacctatcaaga
aaataattcctgcttagattttgcaattttgtggagtacattttcttttt
aaagcatgtccttcggattctctggatttctttcttatctcttgttatgg
cctccctttcctttctgattgtgtttagatattctcgctccatcttttag
ttttgataagggtttatctatttgttgattttcctcaaagaaccaactct
atttttattgattctttgtattttactctttactctttgtttctatttta
ttgatttcagccctgactttgattattttctgccatctacttccttttgg
atgtgttttcttctttctgttttaaagctttttagtgtgctattaagttg
ttagtatgaggcctctccaacttttttatgagacactttaatggtatgaa
ctttctcttagcatggctttctttcattgtatccctttaagtttggtatg
ttgtgtattcattttcattgaaatctaggagtctttacattcttcttttt
tataaaccagttagttcatgatctagtagtcattagcccgttgtcattta
agttgaagcttgttagcttcatgagttgtagcttttggatgtttccgttg
cgagattgggaacaacgaccttctattcacacact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_99402491_99403684
seq2: B6Ng01-273J04.b_43_1232 (reverse)

seq1  GCATTTTTCCCAATT-GCCT-GCATCTCCCAATTACCTGTTCTCCTAGTG  48
      ||||||||||||||| |||| ||||||  ||||||| |    | ||||||
seq2  GCATTTTTCCCAATTGGCCTGGCATCT--CAATTACGT----TTCTAGTG  44

seq1  CCTCCTGT-GAGGCCTCTGAATTCTTCAT-GGCAATC-ATGACTGAGTGA  95
      ||| |||| |||||||| ||  || |||| ||||||| ||||||||||||
seq2  CCT-CTGTGGAGGCCTCGGA--TC-TCATGGGCAATCAATGACTGAGTGA  90

seq1  TCGAAA-GATAAGGGG-TTAATTTTTTTCTTGGGAATATTAGGTTCCACA  143
      |||||| ||||||||| ||| |||||||||||||||||||| ||||||||
seq2  TCGAAAGGATAAGGGGTTTATTTTTTTTCTTGGGAATATTA-GTTCCACA  139

seq1  GAGCTGAAAACTTCTGAAACTAACAGTAGAGCCAGCTAAGCATGTGTCAA  193
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGCTGAAAACTTCTGAAACTAACAGTAGAGCCAGCT-AGCATGTGTCAA  188

seq1  TTCAAATTCACTTCTCTAGTTATCGTATGGCATGAAT-CCAACAGTAGGT  242
      ||||||||||| ||||||||||||||||||||||||| ||||||||||||
seq2  TTCAAATTCAC-TCTCTAGTTATCGTATGGCATGAATCCCAACAGTAGGT  237

seq1  ATGTCTGCATCCTTTTTCCAGGTGCTGATACCAGACTGCCAGCTCCTCAA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGCATCCTTTTTCCAGGTGCTGATACCAGACTGCCAGCTCCTCAA  287

seq1  AGCTGGCAACATTACCAGCAGCTGGTTGACTGGGTTTGAGCAATACCACT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGCAACATTACCAGCAGCTGGTTGACTGGGTTTGAGCAATACCACT  337

seq1  GTGTGGTCTGTGGAAATATTTTGGATGTTTTCTATTCTTCTTTCCATTCC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTCTGTGGAAATATTTTGGATGTTTTCTATTCTTCTTTCCATTCC  387

seq1  TCAGTTTCTCAGAAGGAAGAAACAAGTGCCTGGCTGCCAGTTGCTGCC-A  441
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  TCAGTTTCTCAGAAGGAAGAAACAAGTGCCTGGCTGCCAGTTGCTGCCAA  437

seq1  ACAAGGTTCCACTTTCCACCTTTCCCTTCAACAGTCTCCGAAATGTACTA  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTTCCACTTTCCACCTTTCCCTTCAACAGTCTCCGAAATGTACTA  487

seq1  GGACAGGACAGGTGACAGGCATGTCTTGGGTTTCTGAGTAGAGGGCAGGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGACAGGTGACAGGCATGTCTTGGGTTTCTGAGTAGAGGGCAGGC  537

seq1  ACATCACTATTTACAACTGATGGCATGTTGCCATCTCTATGCGTATCTAA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACTATTTACAACTGATGGCATGTTGCCATCTCTATGCGTATCTAA  587

seq1  TGCTGAGTTGACAGCAAACAAGTTGGAACGTACATCAGAATCTTATTAAA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGTTGACAGCAAACAAGTTGGAACGTACATCAGAATCTTATTAAA  637

seq1  CTAATCTACACTATAATCTATAGATTTACCGTCACCAAGACTCTAGGTAA  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTACACTATAATCTATAGATTTACCGTCACCAAGACTCTAGGTAA  687

seq1  GAATTGGATTTCATGCCATGTAATTAGGCTTAATGAAATCTCTGTAATGC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGATTTCATGCCATGTAATTAGGCTTAATGAAATCTCTGTAATGC  737

seq1  TTTATAATCAACCAATGGGTTCTTATTTGCCTTCCATTCAACACCGACTA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAATCAACCAATGGGTTCTTATTTGCCTTCCATTCAACACCGACTA  787

seq1  ATGCTTCTTATAGCACTCAGAGGCTAGGAAAGGCTGCTTCCTTTCAAATA  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTCTTATAGCACTCAGAGGCTAGGAAAGGCTGCTTCCTTTCAAATA  837

seq1  ATTTGTTTCTTTTTTTCCCCCATTTTAAAAACATTATTCACTGTTATGTG  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTCTTTTTTTCCCCCATTTTAAAAACATTATTCACTGTTATGTG  887

seq1  TATGACTGGGATTCCAGAAAATTCACCAGTTGGACCCAGAAAGTCTTTTA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTGGGATTCCAGAAAATTCACCAGTTGGACCCAGAAAGTCTTTTA  937

seq1  AAACAGGCTGTTCAATAGCATCATGTTCACGTTCTTCCAGAATTATTTTG  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGCTGTTCAATAGCATCATGTTCACGTTCTTCCAGAATTATTTTG  987

seq1  GCCCATTGTTTCCCCAAAACATCTCCATCTAGACCAACTGGGTGCTCCCT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATTGTTTCCCCAAAACATCTCCATCTAGACCAACTGGGTGCTCCCT  1037

seq1  TCAAAAACAGGCTAGAGGGCTACATTGTTGAGACCCCTAAATCAGCAGGT  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAACAGGCTAGAGGGCTACATTGTTGAGACCCCTAAATCAGCAGGT  1087

seq1  TAGCTGAAGGTTTGTCCAGCTATCATTCCAGGTGGCTCTTATTTATCTTT  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAAGGTTTGTCCAGCTATCATTCCAGGTGGCTCTTATTTATCTTT  1137

seq1  ATATTTTGCAACTTCTGCTTGCTGGCAAGGGGGACAAAATGAATGGTGAA  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTTGCAACTTCTGCTTGCTGGCAAGGGGGACAAAATGAATGGTGAA  1187

seq1  TTC  1194
      |||
seq2  TTC  1190