BAC Information

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BAC

Clone NameB6Ng01-274F23
Chromosome10 (Build37)
Map Location 88,083,862 - 88,213,649
singlet/doubletdoublet
Overlap geneLOC667046, LOC627414, LOC100042998, EG435236, Spic, EG237433, Arl1, Utp20
Upstream geneLOC100041517, ENSMUSG00000058934, Igf1, Tyms-ps, Pmch, 4930547N16Rik, EG626115, Nup37, Ccdc53, LOC667000, 1200002N14Rik, Gnptab, Sycp3, Chpt1, 8030451F13Rik
Downstream geneSlc5a8, Tmem16d, Gas2l3, Nr1h4, EG627532, Slc17a8, Scyl2, Actr6, E030041M21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274F23.bB6Ng01-274F23.g
ACCGA075690GA075691
length1,095170
definitionB6Ng01-274F23.b B6Ng01-274F23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,083,862 - 88,084,966)(88,213,479 - 88,213,649)
sequence
gaattcaaagtgagtttggagctagtgtggtagtactggcttttgatccc
agtactcaggaggtagagaccagtggaagtcagcctggtctacataggga
ggtgcaggctagcctggtctacatagtgagaccttatctctaaataaata
attaaatgaataaataaataaacaacaaacaagcaaacaaacaaataaat
ataatctatagtgagaccaggcctcaaacaaacaaacaaacaaacaaaca
aagagcaaacaggatgaaaatagcatctactctaaacagacaaagtaaaa
gaacaacaacaacaacaacaacaaaaaaccaagcaaacaagaccaccacc
aacaaaaacaggaacaagaggaaacattgctttgtttatatgaataacaa
aatttgtttatttcctcttatttgtttcctcttctagaaactcattctat
aaaaaagacacttgaaataaagggctgagagcatgaaccataaagctatc
ggtcagatgttaaaaagctatagaaaattaaaaattccattcactatagg
aggaaaaaaaaaatcaaacaatcccaaactgcaggactcattctctgtat
aatttccccacagtcctgtacacatatagcttatgtgcggcttttcttca
gaaattacccagtttttattatttttaaaagcacttgggagctagcgaga
tggctcagcgcagttgctcttccagaggtcctggatctgacatccagagg
acctggctacccacatggtggtttacaaccatctgtaactccacctctcg
aggatccaacacatatgtctggcttcctcgtgcaccagacaggcatgtgg
tacacagagtatgcgcgggcaaaatacataaaatagtatttttgttttgg
tttgttttgtctgttttgtttgttttgttttttaacccatttgaacccca
agcaacgttagcttgttgcttatttatcttttttatccttgtggaatttc
cacacatgtgttgggtcattattcacttccatcagagtatcagtttaagg
aacatctctcattttatcttctatgctgcatctccgtgtagttaa
actgggctcctctggctcaggtgcctggtgtgctcggatttcagaggtgt
gccactgtacccagctgttacacgtgactggggttttttggttggttggt
ggatttttttatttttgtttttgttttaaataacccaccaaatgtgttgt
tagttttctaatgtccgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_88083862_88084966
seq2: B6Ng01-274F23.b_50_1144

seq1  GAATTCAAAGTGAGTTTGGAGCTAGTGTGGTAGTACTGGCTTTTGATCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGTGAGTTTGGAGCTAGTGTGGTAGTACTGGCTTTTGATCCC  50

seq1  AGTACTCAGGAGGTAGAGACCAGTGGAAGTCAGCCTGGTCTACATAGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTCAGGAGGTAGAGACCAGTGGAAGTCAGCCTGGTCTACATAGGGA  100

seq1  GGTGCAGGCTAGCCTGGTCTACATAGTGAGACCTTATCTCTAAATAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAGGCTAGCCTGGTCTACATAGTGAGACCTTATCTCTAAATAAATA  150

seq1  ATTAAATGAATAAATAAATAAACAACAAACAAGCAAACAAACAAATAAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATGAATAAATAAATAAACAACAAACAAGCAAACAAACAAATAAAT  200

seq1  ATAATCTATAGTGAGACCAGGCCTCAAACAAACAAACAAACAAACAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCTATAGTGAGACCAGGCCTCAAACAAACAAACAAACAAACAAACA  250

seq1  AAGAGCAAACAGGATGAAAATAGCATCTACTCTAAACAGACAAAGTAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCAAACAGGATGAAAATAGCATCTACTCTAAACAGACAAAGTAAAA  300

seq1  GAACAACAACAACAACAACAACAAAAAACCAAGCAAACAAGACCACCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAACAACAACAACAACAACAAAAAACCAAGCAAACAAGACCACCACC  350

seq1  AACAAAAACAGGAACAAGAGGAAACATTGCTTTGTTTATATGAATAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACAGGAACAAGAGGAAACATTGCTTTGTTTATATGAATAACAA  400

seq1  AATTTGTTTATTTCCTCTTATTTGTTTCCTCTTCTAGAAACTCATTCTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTTTATTTCCTCTTATTTGTTTCCTCTTCTAGAAACTCATTCTAT  450

seq1  AAAAAAGACACTTGAAATAAAGGGCTGAGAGCATGAACCATAAAGCTATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGACACTTGAAATAAAGGGCTGAGAGCATGAACCATAAAGCTATC  500

seq1  GGTCAGATGTTAAAAAGCTATAGAAAATTAAAAATTCCATTCACTATAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGATGTTAAAAAGCTATAGAAAATTAAAAATTCCATTCACTATAGG  550

seq1  AGGAAAAAAAAAATCAAACAATCCCAAACTGCAGGACTCATTCTCTGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAAAAAATCAAACAATCCCAAACTGCAGGACTCATTCTCTGTAT  600

seq1  AATTTCCCCACAGTCCTGTACACATATAGCTTATGTGCGGCTTTTCTTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCCCCACAGTCCTGTACACATATAGCTTATGTGCGGCTTTTCTTCA  650

seq1  GAAATTACCCAGTTTTTATTATTTTTAAAAGCACTTGGGAGCTAGCGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTACCCAGTTTTTATTATTTTTAAAAGCACTTGGGAGCTAGCGAGA  700

seq1  TGGCTCAGCGCAGTTGCTCTTCCAGAGGTCCTGGATCTGACATCCAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGCGCAGTTGCTCTTCCAGAGGTCCTGGATCTGACATCCAGAGG  750

seq1  ACCTGGCTACCCACATGGTGGTTTACAACCATCTGTAACTCCACCTCTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGCTACCCACATGGTGGTTTACAACCATCTGTAACTCCACCTCTCG  800

seq1  AGGATCCAACACATATGTCTGGCTTCCTCGTGCACCAGACAGGCATGTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCCAACACATATGTCTGGCTTCCTCGTGCACCAGACAGGCATGTGG  850

seq1  TACACAGAGTATGCGCGGGCAAAATACATAAAATAGTATTTTTGTTTTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TACACAGAGTATGCGCGGGCAAAATACATAAAATAGTATTTTTGTTTTGG  900

seq1  TTTGTTTTGTTCTGTTTTTGTTTGTTTTTGTTTTTTTAAACCATTTGAAC  950
      ||||||||| |||| |||||||||||||   |||||||| ||||||||||
seq2  TTTGTTTTG-TCTG-TTTTGTTTGTTTT--GTTTTTTAACCCATTTGAAC  946

seq1  CCCAAGCAACGTTAGCCTGTTGCTTATTTATCTTTTTTATCCTTTGTGAA  1000
      |||||||||||||||| |||||||||||||||||||||||||||   |||
seq2  CCCAAGCAACGTTAGCTTGTTGCTTATTTATCTTTTTTATCCTTGTGGAA  996

seq1  TTT-CACACATGTGTTTGGGTCA-TAATCACCTCCATCAGAGGTTATTCA  1048
      ||| |||||||||| |||||||| || |||| ||||||||||  || |||
seq2  TTTCCACACATGTG-TTGGGTCATTATTCACTTCCATCAGAG--TA-TCA  1042

seq1  GTTTTAAAGAAAAATCTCTCATTTTTATCTCCTATGCCGCATCTTCGTGT  1098
      ||||  ||| || |||||||| |||||||| |||||| |||||| |||||
seq2  GTTT--AAGGAACATCTCTCA-TTTTATCTTCTATGCTGCATCTCCGTGT  1089

seq1  AAGTTAA  1105
       ||||||
seq2  -AGTTAA  1095

seq1: chr10_88213479_88213649
seq2: B6Ng01-274F23.g_73_242 (reverse)

seq1  AAACGGACATTAGCAGACAGACAGCACATTTGCTGGGTTATTTAAAAACA  50
      ||||||||||||| | ||  ||| |||||||| |||||||||| ||||||
seq2  AAACGGACATTAGAAAACTAACAACACATTTGGTGGGTTATTT-AAAACA  49

seq1  AAAACAAAAATAAAAAAATCCACCAACCAACCAAAAAACCCCAGTCACGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAATAAAAAAATCCACCAACCAACCAAAAAACCCCAGTCACGT  99

seq1  GTAACAGCTGGGTACAGTGGCACACCTCTGAAATCCGAGCACACCAGGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGCTGGGTACAGTGGCACACCTCTGAAATCCGAGCACACCAGGCA  149

seq1  CCTGAGCCAGAGGAGCCCAGT  171
      |||||||||||||||||||||
seq2  CCTGAGCCAGAGGAGCCCAGT  170