BAC Information

Click to search

BAC

Clone NameB6Ng01-274G17
Chromosome10 (Build37)
Map Location 18,545,406 - 18,704,597
singlet/doubletdoublet
Overlap genePerp
Upstream geneTxlnb, Heca, 3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300
Downstream geneTnfaip3, Tpi-rs5, EG637620, Olig3, Ifngr1, Il22ra2, Il20ra, Slc35d3, Pex7, Map3k5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274G17.bB6Ng01-274G17.g
ACCGA075726GA075727
length6741,096
definitionB6Ng01-274G17.b B6Ng01-274G17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,703,924 - 18,704,597)(18,545,406 - 18,546,507)
sequence
gaattccatcacataatttaattaatttatccaaattaactctgcatcac
cattgcaatacaaatatgctatttccaatttcaaggattttgttttcaga
tgtaaaaccaccaaaacgtcttttataatatagtcattcagattttattc
agtaataaggacacttttttccacaaacaagctcatgctttgtaggcatt
gataaactgaatagtgagatagctatcaatctatctatctatctatctat
ctatctatctatctatcatctatttatctaccctcttttcatttattata
aactttctgcatcttttgatgaacctactgtatactccatgatatttaat
aaattattttatcatataacattcaatattttgtcattacaacattgtga
ttttttcattatcctatgatgattttcttagagtcaatttgtggaaatag
agaacaaacatcatagtgttgccaggctatcatctagagattttgttctg
atatggatctctaccaaccaagtacctgatccattctgtaatcatattct
tccttctctctgtttttccctcttgaatatgcacagacgtgtatatctgc
ctgcaaacaagcaaacaagttcattcacttgcgaagaaacacacacacat
acacacacacgggggggggggtga
gaattcaatgacacaaagagacatctctgcatacttaaaagagaataaat
gcttgagaactgccctagaaaaaacaaacttaagacggaatgaaacgagg
aagacaagccaggatttggaaaccaagataaatgataatgagaagtcaag
ctgaaataaagatagtactgaaccactcaacaacccaagtagaaaactct
tggaaaagtagaatggatcaaacaggcgatagaatattaggagccaaaga
taagaggaggacttagaccatacacgtcaaaagtatgaagtttgaaaaat
atccagtaaagaacatgaagggaccttggggcacagtttcaaggtcaaac
ctcaaaattataggcatagacaaaagaggcaaatcgtccatcagtggtgg
agaccagatcttcaatcagatctataatcaatcccagccctctggaagct
gtagcaagatggttatgttgtaagtgttttgggatgaagggcatttattt
atctaggggatctatagggttcatcccatgagataaagaaaagactggat
atctgggaaaatcagaagtccaaaattctactgtcaagaagcaacagtgg
cagttgctgagaaagcgaagcagaaaaacccagcagagccagaagagaaa
gaaaaccacaaaggttttgagagcagacagttgcactcatggaaatgagg
aagtcccagagctgagggtccatcctggagtctggctctgctgttggaca
gttcataggatctccaggccctacctcctctagactcctttccccttcta
tttgattggtcctgcccatgccagccattagcaatttgtatcaggtacaa
tgttctggttcgtggaaggggaaatactaccctaggagcaaaaaacaact
cctcttaaaggggcctatcctgtgtttctggttggcctaagtttccctga
ctcttcttcaatcacaagttcaaggtcagcttgccctaaaataaattggt
tgaagaaacaaaaaaccaaaacaacaacacaacaaaacccgcaaaaaaaa
accccaaaaaacaacaacaaaaaaaaaaaaaacaaatacaataacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_18703924_18704597
seq2: B6Ng01-274G17.b_41_714 (reverse)

seq1  TCACCCCCCCCCCCGTGTGTGTGTATGTGTGTGTGTTTCTTCGCAAGTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCCCCCCCCCGTGTGTGTGTATGTGTGTGTGTTTCTTCGCAAGTGA  50

seq1  ATGAACTTGTTTGCTTGTTTGCAGGCAGATATACACGTCTGTGCATATTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACTTGTTTGCTTGTTTGCAGGCAGATATACACGTCTGTGCATATTC  100

seq1  AAGAGGGAAAAACAGAGAGAAGGAAGAATATGATTACAGAATGGATCAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGAAAAACAGAGAGAAGGAAGAATATGATTACAGAATGGATCAGG  150

seq1  TACTTGGTTGGTAGAGATCCATATCAGAACAAAATCTCTAGATGATAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGGTTGGTAGAGATCCATATCAGAACAAAATCTCTAGATGATAGCC  200

seq1  TGGCAACACTATGATGTTTGTTCTCTATTTCCACAAATTGACTCTAAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAACACTATGATGTTTGTTCTCTATTTCCACAAATTGACTCTAAGAA  250

seq1  AATCATCATAGGATAATGAAAAAATCACAATGTTGTAATGACAAAATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATCATAGGATAATGAAAAAATCACAATGTTGTAATGACAAAATATT  300

seq1  GAATGTTATATGATAAAATAATTTATTAAATATCATGGAGTATACAGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTTATATGATAAAATAATTTATTAAATATCATGGAGTATACAGTAG  350

seq1  GTTCATCAAAAGATGCAGAAAGTTTATAATAAATGAAAAGAGGGTAGATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATCAAAAGATGCAGAAAGTTTATAATAAATGAAAAGAGGGTAGATA  400

seq1  AATAGATGATAGATAGATAGATAGATAGATAGATAGATAGATAGATTGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATGATAGATAGATAGATAGATAGATAGATAGATAGATAGATTGAT  450

seq1  AGCTATCTCACTATTCAGTTTATCAATGCCTACAAAGCATGAGCTTGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATCTCACTATTCAGTTTATCAATGCCTACAAAGCATGAGCTTGTTT  500

seq1  GTGGAAAAAAGTGTCCTTATTACTGAATAAAATCTGAATGACTATATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAAAAGTGTCCTTATTACTGAATAAAATCTGAATGACTATATTAT  550

seq1  AAAAGACGTTTTGGTGGTTTTACATCTGAAAACAAAATCCTTGAAATTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGACGTTTTGGTGGTTTTACATCTGAAAACAAAATCCTTGAAATTGG  600

seq1  AAATAGCATATTTGTATTGCAATGGTGATGCAGAGTTAATTTGGATAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGCATATTTGTATTGCAATGGTGATGCAGAGTTAATTTGGATAAAT  650

seq1  TAATTAAATTATGTGATGGAATTC  674
      ||||||||||||||||||||||||
seq2  TAATTAAATTATGTGATGGAATTC  674

seq1: chr10_18545406_18546507
seq2: B6Ng01-274G17.g_64_1159

seq1  GAATTCAATGACACAAAGAGACATCTCTGCATACTTAAAAGAGAATAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGACACAAAGAGACATCTCTGCATACTTAAAAGAGAATAAAT  50

seq1  GCTTGAGAACTGCCCTAGAAAAAACAAACTTAAGACGGAATGAAACGAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGAACTGCCCTAGAAAAAACAAACTTAAGACGGAATGAAACGAGG  100

seq1  AAGACAAGCCAGGATTTGGAAACCAAGATAAATGATAATGAGAAGTCAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACAAGCCAGGATTTGGAAACCAAGATAAATGATAATGAGAAGTCAAG  150

seq1  CTGAAATAAAGATAGTACTGAACCACTCAACAACCCAAGTAGAAAACTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATAAAGATAGTACTGAACCACTCAACAACCCAAGTAGAAAACTCT  200

seq1  TGGAAAAGTAGAATGGATCAAACAGGCGATAGAATATTAGGAGCCAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAGTAGAATGGATCAAACAGGCGATAGAATATTAGGAGCCAAAGA  250

seq1  TAAGAGGAGGACTTAGACCATACACGTCAAAAGTATGAAGTTTGAAAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGAGGACTTAGACCATACACGTCAAAAGTATGAAGTTTGAAAAAT  300

seq1  ATCCAGTAAAGAACATGAAGGGACCTTGGGGCACAGTTTCAAGGTCAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAGTAAAGAACATGAAGGGACCTTGGGGCACAGTTTCAAGGTCAAAC  350

seq1  CTCAAAATTATAGGCATAGACAAAAGAGGCAAATCGTCCATCAGTGGTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAATTATAGGCATAGACAAAAGAGGCAAATCGTCCATCAGTGGTGG  400

seq1  AGACCAGATCTTCAATCAGATCTATAATCAATCCCAGCCCTCTGGAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGATCTTCAATCAGATCTATAATCAATCCCAGCCCTCTGGAAGCT  450

seq1  GTAGCAAGATGGTTATGTTGTAAGTGTTTTGGGATGAAGGGCATTTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAAGATGGTTATGTTGTAAGTGTTTTGGGATGAAGGGCATTTATTT  500

seq1  ATCTAGGGGATCTATAGGGTTCATCCCATGAGATAAAGAAAAGACTGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGGGGATCTATAGGGTTCATCCCATGAGATAAAGAAAAGACTGGAT  550

seq1  ATCTGGGAAAATCAGAAGTCCAAAATTCTACTGTCAAGAAGCAACAGTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGAAAATCAGAAGTCCAAAATTCTACTGTCAAGAAGCAACAGTGG  600

seq1  CAGTTGCTGAGAAAGCGAAGCAGAAAAACCCAGCAGAGCCAGAAGAGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCTGAGAAAGCGAAGCAGAAAAACCCAGCAGAGCCAGAAGAGAAA  650

seq1  GAAAACCACAAAGGTTTTGAGAGCAGACAGTTGCACTCATGGAAATGAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCACAAAGGTTTTGAGAGCAGACAGTTGCACTCATGGAAATGAGG  700

seq1  AAGTCCCAGAGCTGAGGGTCCATCCTGGAGTCTGGCTCTGCTGTTGGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCCAGAGCTGAGGGTCCATCCTGGAGTCTGGCTCTGCTGTTGGACA  750

seq1  GTTCATAGGATCTCCAGGCCCTACCTCCTCTAGACTCCTTTCCCCTTCTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATAGGATCTCCAGGCCCTACCTCCTCTAGACTCCTTTCCCCTTCTA  800

seq1  TTTGATTGGTCCTGCCCATGCCAGCCATTAGCAATTTGTATCAGGTACAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTGGTCCTGCCCATGCCAGCCATTAGCAATTTGTATCAGGTACAA  850

seq1  TGTTCTGGTTCGTGGAAGGGGAAATACTACCCTAGGAGCAAAAAACAACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGGTTCGTGGAAGGGGAAATACTACCCTAGGAGCAAAAAACAACT  900

seq1  CCTCTTAAAGGGGCCTATCCCTGTGTTTCTGGTTGGCCTAAGTTTCCCTG  950
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCTCTTAAAGGGGCCTAT-CCTGTGTTTCTGGTTGGCCTAAGTTTCCCTG  949

seq1  ACTCTTCTTCAATCACAAGTTCAAGGTCAGCCTGCCCT-ACATAAATT-G  998
      ||||||||||||||||||||||||||||||| |||||| | ||||||| |
seq2  ACTCTTCTTCAATCACAAGTTCAAGGTCAGCTTGCCCTAAAATAAATTGG  999

seq1  TTGAAGAAACAAAAAACCAAAACAACAACAACAACAAAAACCCGCCAAAA  1048
      ||||||||||||||||||||||||||||| ||||| |||||||| |||||
seq2  TTGAAGAAACAAAAAACCAAAACAACAAC-ACAAC-AAAACCCG-CAAAA  1046

seq1  AAAAACCCCAAAAAACAAACAAACAAAAAAAAAAAAAAACAAAATACAAT  1098
      ||||||||||||||||||   |||||||||||||||||   |||||||||
seq2  AAAAACCCCAAAAAACAA--CAACAAAAAAAAAAAAAA--CAAATACAAT  1092

seq1  AACC  1102
      ||||
seq2  AACC  1096