BAC Information

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BAC

Clone NameB6Ng01-274G20
Chromosome10 (Build37)
Map Location 17,490,114 - 17,632,470
singlet/doubletdoublet
Overlap geneTxlnb, LOC665321, Heca
Upstream geneLOC100039576, LOC627511, Cited2
Downstream gene3110003A17Rik, Reps1, LOC100039660, Ccdc28a, LOC627646, Nhsl1, Hebp2, EG627729, D10Bwg1379e, EG237300, Perp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-274G20.bB6Ng01-274G20.g
ACCGA075732GA075733
length1,1331,067
definitionB6Ng01-274G20.b B6Ng01-274G20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,490,114 - 17,491,272)(17,631,396 - 17,632,470)
sequence
gaattctctatataaaccagactgtctttcaactcacagatactggctct
gcctcctgagtgctggggttaaaggtaaccttccccagcatgggttggga
cttaattaatacagagttctaagcaagggagttgttgacctgcctctggt
ggtttgaatatgcttggcccagggagtggcactcctcattggagtaggtg
tggtcatgtggaggaagtgtgtcactgatgggtgtgggctttgagacccc
cctcctagctgcctggaagttactcttctcctgtttgcctttggaacaag
atgtaaaactctcagtgcttctagtactatatctgccttgatgctaccat
gtttcttgccatgatgataatggactgaacttctgaacctgtaaaccaga
cccaattaaatgttctctgttacaagcgttgccttggtcatgttgtctct
tcacagcaaaggaaatcctaactaagacaccacctatgatctgtttttat
attctcttcactgtcctaaaagtgcatgtcaaagggggtggcattggaag
atggactttctggaggcgattgagtcatgaaaatggtgtcctttggcagg
tcagcacccatatgagagagctatctgacttctgctaacataggagaaca
ctgagaaggtacggtcacagagtcagaaacaggtccttaccaggtactga
cctaactttctagtcttctgagaagctgattccattgtttatcggtctcc
caggctatgttgccacattataaccgctcaattggactgaaatagatttc
ttttaaactatatggactccattagcacgctgcagacttttacattgata
tattttaagtccagactattcattcaactttagattcataattcaactat
ttaatgacccttttactcaggcttataaaactttacctgtccaaaactta
tcctccgtatgttcctcctaatattctctacttaaaaaaaaaaaaagtag
aagaaagaagaaagaagatgaagaagaagaaagatgaagatgagaaagag
aaggattcagtcagcatgtgacacatactttcattccacacccaggagcc
aaggccagccagatttctgaattccaggctagt

gaattctttagtttttgttgtaaagtgaaactccccaaagcccagtggcc
tcaagggacttaagccctctcatggtttcatggctgggttggttaggacg
gtttctcatccaaccggtgatagacaggttggcttctggaactcccatgg
aatgggttctctgttagccatgcccacctttatcctccattaggttaatt
tgaggtttttttttttaagttgtgcttctaattgaacggattgtagtgta
atgtttttgtgcctgtttatattatgtaataagattagggtactgaagat
tccattcacttcatatttataatctatgtgataagaatgttccaaatcct
actaattttgaaaaatatataatgaactgtagtcactacaatacagtgaa
acattagcacttttactcctcctaacaatatagttgtttgcccattaact
agcctcttcctcccaccccagtgtctctctcttccctaggagaggtaacc
actgtacttcatccttgtacatcacacagctatgtggatcacatggtatc
agtctttttgtgcctggtttatttattacttaataaaatgtccttcaggt
atatccatttaatggaagtatgattaaatttctttggttgctaaatatgt
gtgtatatgtatgtaaacaaaatattttctttgtcatttaatcttgtaat
ggacacttagtttgattctgtagcttttgtgaggaatactgcagtgaata
tgggaatacctgtacttctgacatactgatttgacctctggatcatgtgg
taattctaattaattctaataattacacaagtcaagaattatataattct
agttacacaagtcaaaccattctattattaggtaattcataatttttatt
atgtgtttatttttgaaaacagaatcttagagtgtagccttggctgggcc
tggaactttcttatagatcggtgcctcaacctcagagatcagttatggcc
tcttctcagagtgctggattaaaggtgtggcactatccctgctaattttt
agttttttcaaaaatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_17490114_17491272
seq2: B6Ng01-274G20.b_44_1176

seq1  GAATTCTCTATATAAACCAGACTGTCTTTCAACTCACAGATACTGGCTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATATAAACCAGACTGTCTTTCAACTCACAGATACTGGCTCT  50

seq1  GCCTCCTGAGTGCTGGGGTTAAAGGTAACCTTCCCCAGCATGGGTTGGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTGAGTGCTGGGGTTAAAGGTAACCTTCCCCAGCATGGGTTGGGA  100

seq1  CTTAATTAATACAGAGTTCTAAGCAAGGGAGTTGTTGACCTGCCTCTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATTAATACAGAGTTCTAAGCAAGGGAGTTGTTGACCTGCCTCTGGT  150

seq1  GGTTTGAATATGCTTGGCCCAGGGAGTGGCACTCCTCATTGGAGTAGGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGAATATGCTTGGCCCAGGGAGTGGCACTCCTCATTGGAGTAGGTG  200

seq1  TGGTCATGTGGAGGAAGTGTGTCACTGATGGGTGTGGGCTTTGAGACCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATGTGGAGGAAGTGTGTCACTGATGGGTGTGGGCTTTGAGACCCC  250

seq1  CCTCCTAGCTGCCTGGAAGTTACTCTTCTCCTGTTTGCCTTTGGAACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTAGCTGCCTGGAAGTTACTCTTCTCCTGTTTGCCTTTGGAACAAG  300

seq1  ATGTAAAACTCTCAGTGCTTCTAGTACTATATCTGCCTTGATGCTACCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAACTCTCAGTGCTTCTAGTACTATATCTGCCTTGATGCTACCAT  350

seq1  GTTTCTTGCCATGATGATAATGGACTGAACTTCTGAACCTGTAAACCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTGCCATGATGATAATGGACTGAACTTCTGAACCTGTAAACCAGA  400

seq1  CCCAATTAAATGTTCTCTGTTACAAGCGTTGCCTTGGTCATGTTGTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTAAATGTTCTCTGTTACAAGCGTTGCCTTGGTCATGTTGTCTCT  450

seq1  TCACAGCAAAGGAAATCCTAACTAAGACACCACCTATGATCTGTTTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCAAAGGAAATCCTAACTAAGACACCACCTATGATCTGTTTTTAT  500

seq1  ATTCTCTTCACTGTCCTAAAAGTGCATGTCAAAGGGGGTGGCATTGGAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTTCACTGTCCTAAAAGTGCATGTCAAAGGGGGTGGCATTGGAAG  550

seq1  ATGGACTTTCTGGAGGCGATTGAGTCATGAAAATGGTGTCCTTTGGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACTTTCTGGAGGCGATTGAGTCATGAAAATGGTGTCCTTTGGCAGG  600

seq1  TCAGCACCCATATGAGAGAGCTATCTGACTTCTGCTAACATAGGAGAACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACCCATATGAGAGAGCTATCTGACTTCTGCTAACATAGGAGAACA  650

seq1  CTGAGAAGGTACGGTCACAGAGTCAGAAACAGGTCCTTACCAGGTACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGGTACGGTCACAGAGTCAGAAACAGGTCCTTACCAGGTACTGA  700

seq1  CCTAACTTTCTAGTCTTCTGAGAAGCTGATTCCATTGTTTATCGGTCTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACTTTCTAGTCTTCTGAGAAGCTGATTCCATTGTTTATCGGTCTCC  750

seq1  CAGGCTATGTTGCCACATTATAACCGCTCAATTGGACTGAAATAGATTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTATGTTGCCACATTATAACCGCTCAATTGGACTGAAATAGATTTC  800

seq1  TTTTAAACTATATGGACTCCATTAGCACGCTGCAGACTTTTACATTGATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAACTATATGGACTCCATTAGCACGCTGCAGACTTTTACATTGATA  850

seq1  TATTTTAAGTCCAGACTATTCATTCAACTTTAGATTCATAATTCAACTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTAAGTCCAGACTATTCATTCAACTTTAGATTCATAATTCAACTAT  900

seq1  TTAATGACCCTTTTACTCAGGCTTATAAAACTTTACCTGTCCAAAACTTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGACCCTTTTACTCAGGCTTATAAAACTTTACCTGTCCAAAACTTA  950

seq1  TCCCTCCGTTATGTTCCTCCTAATATTCTCTACTTAAAAAAAAAAAAGTA  1000
      | |||||| ||||||||||||||||||||||||||||||||||||||   
seq2  T-CCTCCG-TATGTTCCTCCTAATATTCTCTACTTAAAAAAAAAAAAAGT  998

seq1  AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG  1050
      ||         ||||||| ||||||||   | |  |||||   |||||||
seq2  AG---------AAGAAAG-AAGAAAGA---AGATGAAGAA--GAAGAAAG  1033

seq1  AAAGAAAGAAAAAGAAGAAAAGGAATTTCAGTCAGGCATGGTGACACATA  1100
        |  ||||  |  |||| |||||  |||||||| |||| ||||||||||
seq2  --ATGAAGATGAGAAAGAGAAGGA--TTCAGTCA-GCAT-GTGACACATA  1077

seq1  CCTTTCATTCCACACCCAGGAAGCAGAGGCAGGCAGATTTCTGAGAATTC  1150
       ||||||||||||||||||||  ||  | ||| |||||||||  ||||||
seq2  -CTTTCATTCCACACCCAGGAGCCAAGGCCAGCCAGATTTCT--GAATTC  1124

seq1  CAGGCTAGT  1159
      |||||||||
seq2  CAGGCTAGT  1133


seq1: chr10_17631396_17632470
seq2: B6Ng01-274G20.g_63_1129 (reverse)

seq1  ATATTTTTAAAAAAAAACTAAAAAAATAGGCCAGGGATAGTGGCCCACAC  50
      ||||||||   |||||||| ||||| |||  |||||||||||  ||||||
seq2  ATATTTTT--GAAAAAACT-AAAAATTAG--CAGGGATAGTG--CCACAC  43

seq1  CTTTAATCCCAGCACTCTGGAGGAAGA-GCCAT-ACTGATCTCTGAGGTT  98
      ||||||| |||||||||||   ||||| ||||| ||||||||||||||||
seq2  CTTTAAT-CCAGCACTCTG--AGAAGAGGCCATAACTGATCTCTGAGGTT  90

seq1  GAGGCCACCCGATCTAT-AGGAAGTTCCAGG-CCAGCCAAGGCTACACTC  146
      |||||   ||||||||| || |||||||||| ||||||||||||||||||
seq2  GAGGC--ACCGATCTATAAGAAAGTTCCAGGCCCAGCCAAGGCTACACTC  138

seq1  TAAGATTCTG-TTTCAAAAATAAACACATAAATAAAAATTATGAATTACC  195
      |||||||||| |||||||||||||||||| ||||||||||||||||||||
seq2  TAAGATTCTGTTTTCAAAAATAAACACAT-AATAAAAATTATGAATTACC  187

seq1  TAATAATAGAATGGTTTGACTTGTGTAACTAGAATTATATAATTCTTGAC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAGAATGGTTTGACTTGTGTAACTAGAATTATATAATTCTTGAC  237

seq1  TTGTGTAATTATTAGAATTAATTAGAATTACCACATGATCCAGAGGTCAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAATTATTAGAATTAATTAGAATTACCACATGATCCAGAGGTCAA  287

seq1  ATCAGTATGTCAGAAGTACAGGTATTCCCATATTCACTGCAGTATTCCTC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTATGTCAGAAGTACAGGTATTCCCATATTCACTGCAGTATTCCTC  337

seq1  ACAAAAGCTACAGAATCAAACTAAGTGTCCATTACAAGATTAAATGACAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGCTACAGAATCAAACTAAGTGTCCATTACAAGATTAAATGACAA  387

seq1  AGAAAATATTTTGTTTACATACATATACACACATATTTAGCAACCAAAGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATATTTTGTTTACATACATATACACACATATTTAGCAACCAAAGA  437

seq1  AATTTAATCATACTTCCATTAAATGGATATACCTGAAGGACATTTTATTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATCATACTTCCATTAAATGGATATACCTGAAGGACATTTTATTA  487

seq1  AGTAATAAATAAACCAGGCACAAAAAGACTGATACCATGTGATCCACATA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATAAATAAACCAGGCACAAAAAGACTGATACCATGTGATCCACATA  537

seq1  GCTGTGTGATGTACAAGGATGAAGTACAGTGGTTACCTCTCCTAGGGAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGTGATGTACAAGGATGAAGTACAGTGGTTACCTCTCCTAGGGAAG  587

seq1  AGAGAGACACTGGGGTGGGAGGAAGAGGCTAGTTAATGGGCAAACAACTA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACACTGGGGTGGGAGGAAGAGGCTAGTTAATGGGCAAACAACTA  637

seq1  TATTGTTAGGAGGAGTAAAAGTGCTAATGTTTCACTGTATTGTAGTGACT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTAGGAGGAGTAAAAGTGCTAATGTTTCACTGTATTGTAGTGACT  687

seq1  ACAGTTCATTATATATTTTTCAAAATTAGTAGGATTTGGAACATTCTTAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCATTATATATTTTTCAAAATTAGTAGGATTTGGAACATTCTTAT  737

seq1  CACATAGATTATAAATATGAAGTGAATGGAATCTTCAGTACCCTAATCTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGATTATAAATATGAAGTGAATGGAATCTTCAGTACCCTAATCTT  787

seq1  ATTACATAATATAAACAGGCACAAAAACATTACACTACAATCCGTTCAAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACATAATATAAACAGGCACAAAAACATTACACTACAATCCGTTCAAT  837

seq1  TAGAAGCACAACTTAAAAAAAAAAACCTCAAATTAACCTAATGGAGGATA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCACAACTTAAAAAAAAAAACCTCAAATTAACCTAATGGAGGATA  887

seq1  AAGGTGGGCATGGCTAACAGAGAACCCATTCCATGGGAGTTCCAGAAGCC  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGGGCATGGCTAACAGAGAACCCATTCCATGGGAGTTCCAGAAGCC  937

seq1  AACCTGTCTATCACCGGTTGGATGAGAAACCGTCCTAACCAACCCAGCCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTCTATCACCGGTTGGATGAGAAACCGTCCTAACCAACCCAGCCA  987

seq1  TGAAACCATGAGAGGGCTTAAGTCCCTTGAGGCCACTGGGCTTTGGGGAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACCATGAGAGGGCTTAAGTCCCTTGAGGCCACTGGGCTTTGGGGAG  1037

seq1  TTTCACTTTACAACAAAAACTAAAGAATTC  1075
      ||||||||||||||||||||||||||||||
seq2  TTTCACTTTACAACAAAAACTAAAGAATTC  1067


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