BAC Information

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BAC

Clone NameB6Ng01-275A12
Chromosome10 (Build37)
Map Location 94,277,315 - 94,369,192
singlet/doubletdoublet
Overlap genePlxnc1
Upstream geneUsp44, Metap2, Vezt, Fgd6, Nr2c1, Ndufa12, EG215472, LOC100041955, Tmcc3, EG667315, 4921537D05Rik
Downstream geneCradd, Socs2, LOC100042004, D10Ertd322e, Ube2n, Nudt4, EG628119
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275A12.bB6Ng01-275A12.g
ACCGA076177GA076178
length1,147988
definitionB6Ng01-275A12.b B6Ng01-275A12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,277,315 - 94,278,463)(94,368,204 - 94,369,192)
sequence
gaattccattctctatatagaaataaaacgtgtataaccacacctgcttt
ctaatacggaggtcaaggagacagctgccagaggtgcttcagagctaaag
aataatggtagtaatgacttatccagttgatcgccactgtaacattaggt
cagtgtactttcacctggacacagagactcggtccacactgcccagcggg
actgactgcatgcagtgtttcagaaggaagaccctacccatgaaaggcat
catgtgggctcctggctttaatcccagcccaccactagccaactgaatca
cttctctgggtctccacttctcccttgcaacatgtaaatgatggtaactg
acttctgatagtacccgatggtgaatagacatcatccttaggatctggat
tggttgacctgtgcttctggcatatggctcacagaccctcacaaggtcag
gagatatctgaaactctgggcagattctctgagccatgcattctttgctg
actgtgtccccacagtaaatttcttagagcccatgtgtctcagtatgggg
gcacagcagtttcaaggacactgttaaggcctttgccttcatcacttacc
caaaggtccctcccccaccccctgccaagcactttcacattggcatctag
gatttcaacataggcagcatgaaaggaaagaccttgctctgggatactgc
atagagttctaggcctcctggtcacatggtgctctgtaaatgtcctgagt
actttttggctagccaggattctacatacatatggccattttgacttatt
gtcacggaagcttcaggaggcagcaatttcagtgaaacccaatagggctt
tcccaaggcagagaacgaggtgccatcagtgagaaagtggtgctcatcat
acattgaacgtgacaaggaacagattcttaaactactctgtctttaggaa
cttgggtgttcacaagccacccagcctatggccttttgctataatataca
cccagacatattttgtccccctgcatcttcatttatgatatgatagtcca
ctttagtgcagactagcaaatgattaaactcagaatttagtagatttgca
cttagaagtttgcacagtagtctccagtgtgcgcccaaaatagtcct
gaattcctgttgcaaactgcagtaaacggaaatcctgttcagagtgctta
gcagcggcagacccccactgtggctggtgcctcccgttacaaaggtattt
cctgaatcttttctcaccagctcacattttttttttcagaaagtgtcatg
cggcccaacacttgttgccctactttaatgatccattccacgctgtgacg
aagcagagctctccaggactgcaatgtacgatgtaaccataattcattct
taaagatggttcttgccatgtcagtatcaagtcatttgacccaggctaca
cagggccacccggtctgggccgtgacttgagacgggagaggctagtgcag
gtgggtttgctttttatttcctaccaagttagccaagacttcagagagag
gcaaaaggttcgcccttggagacgataaaaagaatagcaacgtttgaaat
ttttcaaatgaatcctcatcatgccgtgtattctgctcgctcggcggaag
ccttattattaatggcattgtcttcttgcacaccatatagccctgggcct
gatgtacaatctcagtctccaggcagaatctgcccagcttggtcttgaat
tacgatgtatgcgacccatctaggctcaagggcgacttgtagcggcttcc
tctccatggcagttcttagcatcgtcgctgggaccagcctggttggattc
actgttgctatggtaacccagtactccagctctcgctatagaagcaagga
ggaaagagccttcactgcagctcaggcaggaatgagaggggggaaaaaaa
caagccacatagcagtggctgtcagattggtgctttctgttttttaaagg
tgaacacagattaaaaataaaaataaaaagagcagagcagtagggaaagg
cggaggcagagcgaagggacgtagggggaatgaagggcgatagagaagta
aattagagagctcctgggggggggtgcccggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_94277315_94278463
seq2: B6Ng01-275A12.b_45_1191

seq1  GAATTCCATTCTCTATATAGAAATAAAACGTGTATAACCACACCTGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCTCTATATAGAAATAAAACGTGTATAACCACACCTGCTTT  50

seq1  CTAATACGGAGGTCAAGGAGACAGCTGCCAGAGGTGCTTCAGAGCTAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATACGGAGGTCAAGGAGACAGCTGCCAGAGGTGCTTCAGAGCTAAAG  100

seq1  AATAATGGTAGTAATGACTTATCCAGTTGATCGCCACTGTAACATTAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGGTAGTAATGACTTATCCAGTTGATCGCCACTGTAACATTAGGT  150

seq1  CAGTGTACTTTCACCTGGACACAGAGACTCGGTCCACACTGCCCAGCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTACTTTCACCTGGACACAGAGACTCGGTCCACACTGCCCAGCGGG  200

seq1  ACTGACTGCATGCAGTGTTTCAGAAGGAAGACCCTACCCATGAAAGGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTGCATGCAGTGTTTCAGAAGGAAGACCCTACCCATGAAAGGCAT  250

seq1  CATGTGGGCTCCTGGCTTTAATCCCAGCCCACCACTAGCCAACTGAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGGCTCCTGGCTTTAATCCCAGCCCACCACTAGCCAACTGAATCA  300

seq1  CTTCTCTGGGTCTCCACTTCTCCCTTGCAACATGTAAATGATGGTAACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTGGGTCTCCACTTCTCCCTTGCAACATGTAAATGATGGTAACTG  350

seq1  ACTTCTGATAGTACCCGATGGTGAATAGACATCATCCTTAGGATCTGGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGATAGTACCCGATGGTGAATAGACATCATCCTTAGGATCTGGAT  400

seq1  TGGTTGACCTGTGCTTCTGGCATATGGCTCACAGACCCTCACAAGGTCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGACCTGTGCTTCTGGCATATGGCTCACAGACCCTCACAAGGTCAG  450

seq1  GAGATATCTGAAACTCTGGGCAGATTCTCTGAGCCATGCATTCTTTGCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATATCTGAAACTCTGGGCAGATTCTCTGAGCCATGCATTCTTTGCTG  500

seq1  ACTGTGTCCCCACAGTAAATTTCTTAGAGCCCATGTGTCTCAGTATGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGTCCCCACAGTAAATTTCTTAGAGCCCATGTGTCTCAGTATGGGG  550

seq1  GCACAGCAGTTTCAAGGACACTGTTAAGGCCTTTGCCTTCATCACTTACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGCAGTTTCAAGGACACTGTTAAGGCCTTTGCCTTCATCACTTACC  600

seq1  CAAAGGTCCCTCCCCCACCCCCTGCCAAGCACTTTCACATTGGCATCTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGTCCCTCCCCCACCCCCTGCCAAGCACTTTCACATTGGCATCTAG  650

seq1  GATTTCAACATAGGCAGCATGAAAGGAAAGACCTTGCTCTGGGATACTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCAACATAGGCAGCATGAAAGGAAAGACCTTGCTCTGGGATACTGC  700

seq1  ATAGAGTTCTAGGCCTCCTGGTCACATGGTGCTCTGTAAATGTCCTGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAGTTCTAGGCCTCCTGGTCACATGGTGCTCTGTAAATGTCCTGAGT  750

seq1  ACTTTTTGGCTAGCCAGGATTCTACATACATATGGCCATTTTGACTTATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTGGCTAGCCAGGATTCTACATACATATGGCCATTTTGACTTATT  800

seq1  GTCACGGAAGCTTCAGGAGGCAGCAATTTCAGTGAAACCCAATAGGGCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACGGAAGCTTCAGGAGGCAGCAATTTCAGTGAAACCCAATAGGGCTT  850

seq1  TCCCAAGGCAGAGAACGAGGTGCCATCAGTGAGAAAGTGGTGCTCATCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGGCAGAGAACGAGGTGCCATCAGTGAGAAAGTGGTGCTCATCAT  900

seq1  ACATTGAACGTGACAAGGAACAGATTCTTAAACTACTCTGTCTTTAGGAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAACGTGACAAGGAACAGATTCTTAAACTACTCTGTCTTTAGGAA  950

seq1  CTTGGGTGTTCACAAGCCACCCAGCCTATGGCCTTTTGCTATATATA-AC  999
      ||||||||||||||||||||||||||||||||||||||||||| ||| ||
seq2  CTTGGGTGTTCACAAGCCACCCAGCCTATGGCCTTTTGCTATA-ATATAC  999

seq1  ACCCAAGACAATATTTGTCCCCCTGCAATCTCATTTATGATATGATAGT-  1048
      |||| |||||   ||||||||||||||   ||||||||||||||||||| 
seq2  ACCC-AGACATATTTTGTCCCCCTGCATCTTCATTTATGATATGATAGTC  1048

seq1  CACTTTAGTGCAGACCTAGCCAAATGATTTAAACTCAGAAATTAGTAGAA  1098
      |||||||||||||| |||| ||||||| |||||||||||| ||||||| |
seq2  CACTTTAGTGCAGA-CTAG-CAAATGA-TTAAACTCAGAATTTAGTAG-A  1094

seq1  TCTGCACTTTAGAGGTTGACCAGTAGTCT-CAGTGTGCG-CCAAATAAGT  1146
      | |||||||   || |||  ||||||||| ||||||||| |||||  |||
seq2  TTTGCACTTAGAAGTTTGCACAGTAGTCTCCAGTGTGCGCCCAAAATAGT  1144

seq1  CCT  1149
      |||
seq2  CCT  1147

seq1: chr10_94368204_94369192
seq2: B6Ng01-275A12.g_73_1060 (reverse)

seq1  CCCCCCCCC--GCACCCCCCCCCAGGAGCTCTCTAATTTACTTCTCTATC  48
      |||||||||  |||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCGGGCACCCCCCCCCAGGAGCTCTCTAATTTACTTCTCTATC  50

seq1  GCCCTTCATTCCCCCTACCGTCCCTTCGCTCTGCCCTCCGCCTTTCCCTA  98
      ||||||||||||||||| ||||||||||||||| ||||||||||||||||
seq2  GCCCTTCATTCCCCCTA-CGTCCCTTCGCTCTG-CCTCCGCCTTTCCCTA  98

seq1  CCTGCTCTGCTCTTTTTATTTTTATTTTTAATCTGTGTTCACCTTTAAAA  148
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CTGCTCTGCTCTTTTTATTTTTATTTTTAATCTGTGTTCACCTTTAAAA  147

seq1  AACAGAAAGCACCAATCTGACAGCCACTGCTATGTGGCTTGTTTTTTTCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAAGCACCAATCTGACAGCCACTGCTATGTGGCTTGTTTTTTTCC  197

seq1  CCCCTCTCATTCCTGCCTGAGCTGCAGTGAAGGCTCTTTCCTCCTTGCTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCTCATTCCTGCCTGAGCTGCAGTGAAGGCTCTTTCCTCCTTGCTT  247

seq1  CTATAGCGAGAGCTGGAGTACTGGGTTACCATAGCAACAGTGAATCCAAC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAGCGAGAGCTGGAGTACTGGGTTACCATAGCAACAGTGAATCCAAC  297

seq1  CAGGCTGGTCCCAGCGACGATGCTAAGAACTGCCATGGAGAGGAAGCCGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGTCCCAGCGACGATGCTAAGAACTGCCATGGAGAGGAAGCCGC  347

seq1  TACAAGTCGCCCTTGAGCCTAGATGGGTCGCATACATCGTAATTCAAGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGTCGCCCTTGAGCCTAGATGGGTCGCATACATCGTAATTCAAGAC  397

seq1  CAAGCTGGGCAGATTCTGCCTGGAGACTGAGATTGTACATCAGGCCCAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGGGCAGATTCTGCCTGGAGACTGAGATTGTACATCAGGCCCAGG  447

seq1  GCTATATGGTGTGCAAGAAGACAATGCCATTAATAATAAGGCTTCCGCCG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATATGGTGTGCAAGAAGACAATGCCATTAATAATAAGGCTTCCGCCG  497

seq1  AGCGAGCAGAATACACGGCATGATGAGGATTCATTTGAAAAATTTCAAAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGCAGAATACACGGCATGATGAGGATTCATTTGAAAAATTTCAAAC  547

seq1  GTTGCTATTCTTTTTATCGTCTCCAAGGGCGAACCTTTTGCCTCTCTCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTATTCTTTTTATCGTCTCCAAGGGCGAACCTTTTGCCTCTCTCTG  597

seq1  AAGTCTTGGCTAACTTGGTAGGAAATAAAAAGCAAACCCACCTGCACTAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCTTGGCTAACTTGGTAGGAAATAAAAAGCAAACCCACCTGCACTAG  647

seq1  CCTCTCCCGTCTCAAGTCACGGCCCAGACCGGGTGGCCCTGTGTAGCCTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCGTCTCAAGTCACGGCCCAGACCGGGTGGCCCTGTGTAGCCTG  697

seq1  GGTCAAATGACTTGATACTGACATGGCAAGAACCATCTTTAAGAATGAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAATGACTTGATACTGACATGGCAAGAACCATCTTTAAGAATGAAT  747

seq1  TATGGTTACATCGTACATTGCAGTCCTGGAGAGCTCTGCTTCGTCACAGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTACATCGTACATTGCAGTCCTGGAGAGCTCTGCTTCGTCACAGC  797

seq1  GTGGAATGGATCATTAAAGTAGGGCAACAAGTGTTGGGCCGCATGACACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATGGATCATTAAAGTAGGGCAACAAGTGTTGGGCCGCATGACACT  847

seq1  TTCTGAAAAAAAAAATGTGAGCTGGTGAGAAAAGATTCAGGAAATACCTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAAAAAAAAATGTGAGCTGGTGAGAAAAGATTCAGGAAATACCTT  897

seq1  TGTAACGGGAGGCACCAGCCACAGTGGGGGTCTGCCGCTGCTAAGCACTC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACGGGAGGCACCAGCCACAGTGGGGGTCTGCCGCTGCTAAGCACTC  947

seq1  TGAACAGGATTTCCGTTTACTGCAGTTTGCAACAGGAATTC  989
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAGGATTTCCGTTTACTGCAGTTTGCAACAGGAATTC  988