BAC Information

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BAC

Clone NameB6Ng01-275E02
Chromosome10 (Build37)
Map Location 55,393,606 - 55,394,714
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382460, LOC100041927
Downstream geneD630037F22Rik, 1700060H10Rik, EG629732, Gja1, EG668347, LOC100042622
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-275E02.bB6Ng01-275E02.g
ACCGA076346GA076347
length1,1821,114
definitionB6Ng01-275E02.b B6Ng01-275E02.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcataaaaagcacttgcttccagtaagagtggagactacactccag
gttaactcagctgatacagattttgagccctcttcatcattggtatcata
atcattagaaggctcaggatctgtgtctacttgatgaagtaatctttcag
gcacacatcaggctccattttcttcgtgtgggaaaacagacaggacctca
ctccatattaaatacctgatcaggatcatgccatatgctactaaattttc
tatgccacaattttttaggatataaatgaggctccaaatattgaaaaaga
tattgactttgaaccttttctggagcaaaaactactccaaatttttcaag
cccactgtataagaagagcaaatgcttgtaataaaatgccatcaaaatga
tcagctaataaaattctctctgtatagtgagtaatatacactgaatgatt
caaagtcctaacttcttgtattgaagcagagacttttttttaacatggtg
taaggctattaaccattccttgagcggaaatttcccaatgatattgcatc
atgggctctttaaaattacaaactcactgaaagcaaacactttacaatca
tcagcatgcaaaggagcagtataaaaacaatcctcaaaatccactataat
tttagatgcatttcctggaatggcagctggagcaggcaagccaggtggca
atttctctaagagtcccatagcctcattaaactttcaaaaatcctgtttg
aacattgttttggataacacctggatagatctgtaatccttttaaaataa
tactgcttcagcctaaaagtaatccccaggtccctggaggcaagggacca
aaaacttccttaggcaagttttgcaagacaaaaggagtgacactcaagcc
tcagctgagctctctgaggtttgcattaactcaactataaatatttctta
atctgagccatttcctgaggcctggccaatgattacccctctgcatcaaa
gacagatccaggagttattctgctgtgtctatgtctctacttttgacatc
ttctaaaatgatttatgcccccacacttaaacatcttattacctggtgcc
tgtaagcaatgcctggtactgtaagttccctgcaagcagcagcatagcta
actgatgtattgaggatctactttctctttca
gaattctgtagcaattcttgctcatgaattatctgcacaataggagctaa
ttatagctttcctgtattgagaaaaaacattctgacaggcaaagcttcgt
tttgaaaatcatcgcaatcaagaaagccaacaaatattcactacttttac
atataaggttgtggaaaatgatcagaaagatatgtttttcttgattttta
ggaaattgcattttcttcaagctctaagggtaaataaatgtaatatgaag
taaacagattttgctggttatgggaaatttatttagtacctattatgttt
taatgtttatggttcttgaatattatgtgtactataaaattaatttaaaa
aacatgaagtaagaaaaaaaaattttttactgctattctattttatgcag
aaagaaagacccttaaatagcaaataataaaatggtggtttctctagatt
tccatgcttggaatcattcctctctagaaggaattatttatgtatcctaa
gtaaatttacattagatgggattaaccttcctcaggagaaaccaatggga
aatgaagaaattcttcccaaggcaagagaacattcttaaattctatacaa
gtgggaaaggttggggacactaaagagaaatagaatgatgtgaatggcat
tgctgagatgagaacacaccaggggtggccttgcagatagcctattttgt
agaatgtttatagtaagttgaaacagaaggaaattttgtgcctttaaaag
gttatttgaatcttaaatactcagataaagaatgtagaagtccttcatct
gaaccggaaagggatattctcttacctcggtgaaaatacaatacgcataa
caaataattttgaaggcactattatgtaagagactagaggtacagcaaat
tataagacagatgaagacacaattatcatgggagtgtcccttctgatatg
gtgcattttccagctgtatttgggtgacaatagggtagtttaagttgaga
gatgggcacttatttttacttctcagttaataaaatatttttggccttta
tgtgaaatgatcactattctgattcactcagaagcttaagcttaaaattt
aaaaaattaatagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_55393606_55394714
seq2: B6Ng01-275E02.g_71_1184 (reverse)

seq1  ACTATT-ATTTTGTAAATTTTAAGCTTAAAGTTTCTGAGTGAATCAGAAT  49
      |||||| ||||| |||||||||||||| ||| ||||||||||||||||||
seq2  ACTATTAATTTTTTAAATTTTAAGCTT-AAGCTTCTGAGTGAATCAGAAT  49

seq1  AGTGATCATTTCCACATATAAGCC-AAAATATTTTATTAACCTGAGAAGT  98
      ||||||||||| |||||| | ||| ||||||||||||||| |||||||||
seq2  AGTGATCATTT-CACATAAAGGCCAAAAATATTTTATTAA-CTGAGAAGT  97

seq1  AAAA--TAGTGCCCATCTCTCAACTTAAACTACCCTA-TGTCACCCAAAT  145
      ||||   |||||||||||||||||||||||||||||| ||||||||||||
seq2  AAAAATAAGTGCCCATCTCTCAACTTAAACTACCCTATTGTCACCCAAAT  147

seq1  ACAGCTGG-AAATGCACCATTATCAG-AGGGACAACTCCATGATAATTGT  193
      |||||||| |||||||||| |||||| |||||||   |||||||||||||
seq2  ACAGCTGGAAAATGCACCA-TATCAGAAGGGACACTCCCATGATAATTGT  196

seq1  GTCTTCATCTGTCTTAT-ATTTGCTGTACCTCTAGTCTCTTACATAATAG  242
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTCTTCATCTGTCTTATAATTTGCTGTACCTCTAGTCTCTTACATAATAG  246

seq1  TGCCTTCAAAATTATTTGTTATGCGTATTGTATTTTCACCGAGGTAAGAG  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCAAAATTATTTGTTATGCGTATTGTATTTTCACCGAGGTAAGAG  296

seq1  AATATCCCTTTCCGGTTCAGATGAAGGACTTCTACATTCTTTATCTGAGT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCCCTTTCCGGTTCAGATGAAGGACTTCTACATTCTTTATCTGAGT  346

seq1  ATTTAAGATTCAAATAACCTTTTAAAGGCACAAAATTTCCTTCTGTTTCA  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGATTCAAATAACCTTTTAAAGGCACAAAATTTCCTTCTGTTTCA  396

seq1  ACTTACTATAAACATTCTACAAAATAGGCTATCTGCAAGGCCACCCCTGG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTATAAACATTCTACAAAATAGGCTATCTGCAAGGCCACCCCTGG  446

seq1  TGTGTTCTCATCTCAGCAATGCCATTCACATCATTCTATTTCTCTTTAGT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTCTCATCTCAGCAATGCCATTCACATCATTCTATTTCTCTTTAGT  496

seq1  GTCCCCAACCTTTCCCACTTGTATAGAATTTAAGAATGTTCTCTTGCCTT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCAACCTTTCCCACTTGTATAGAATTTAAGAATGTTCTCTTGCCTT  546

seq1  GGGAAGAATTTCTTCATTTCCCATTGGTTTCTCCTGAGGAAGGTTAATCC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAATTTCTTCATTTCCCATTGGTTTCTCCTGAGGAAGGTTAATCC  596

seq1  CATCTAATGTAAATTTACTTAGGATACATAAATAATTCCTTCTAGAGAGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTAATGTAAATTTACTTAGGATACATAAATAATTCCTTCTAGAGAGG  646

seq1  AATGATTCCAAGCATGGAAATCTAGAGAAACCACCATTTTATTATTTGCT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATTCCAAGCATGGAAATCTAGAGAAACCACCATTTTATTATTTGCT  696

seq1  ATTTAAGGGTCTTTCTTTCTGCATAAAATAGAATAGCAGTAAAAAATTTT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAGGGTCTTTCTTTCTGCATAAAATAGAATAGCAGTAAAAAATTTT  746

seq1  TTTTTCTTACTTCATGTTTTTTAAATTAATTTTATAGTACACATAATATT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTACTTCATGTTTTTTAAATTAATTTTATAGTACACATAATATT  796

seq1  CAAGAACCATAAACATTAAAACATAATAGGTACTAAATAAATTTCCCATA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACCATAAACATTAAAACATAATAGGTACTAAATAAATTTCCCATA  846

seq1  ACCAGCAAAATCTGTTTACTTCATATTACATTTATTTACCCTTAGAGCTT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCAAAATCTGTTTACTTCATATTACATTTATTTACCCTTAGAGCTT  896

seq1  GAAGAAAATGCAATTTCCTAAAAATCAAGAAAAACATATCTTTCTGATCA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAATGCAATTTCCTAAAAATCAAGAAAAACATATCTTTCTGATCA  946

seq1  TTTTCCACAACCTTATATGTAAAAGTAGTGAATATTTGTTGGCTTTCTTG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACAACCTTATATGTAAAAGTAGTGAATATTTGTTGGCTTTCTTG  996

seq1  ATTGCGATGATTTTCAAAACGAAGCTTTGCCTGTCAGAATGTTTTTTCTC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCGATGATTTTCAAAACGAAGCTTTGCCTGTCAGAATGTTTTTTCTC  1046

seq1  AATACAGGAAAGCTATAATTAGCTCCTATTGTGCAGATAATTCATGAGC-  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AATACAGGAAAGCTATAATTAGCTCCTATTGTGCAGATAATTCATGAGCA  1096

seq1  TGAATTGCTACAGAATTC  1109
       |||||||||||||||||
seq2  AGAATTGCTACAGAATTC  1114