BAC Information

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BAC

Clone NameB6Ng01-276E13
Chromosome10 (Build37)
Map Location 116,056,329 - 116,196,279
singlet/doubletdoublet
Overlap geneLOC668080
Upstream geneEG668073, Tspan8, Ptprr, 4933416C03Rik, Ptprb, Kcnmb4, Cnot2
Downstream geneEG668091, Gm239, Rab3ip, D630029K05Rik, LOC544741, Best3, Lrrc10, Cct2, Frs2, Yeats4, 9530003J23Rik, Lyzs, Lyz, Cpsf6, LOC668146, LOC668149, Kifc5c, Cpm, Mdm2, Slc35e3, Nup107
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-276E13.bB6Ng01-276E13.g
ACCGA077104GA077105
length1,1001,004
definitionB6Ng01-276E13.b B6Ng01-276E13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,195,188 - 116,196,279)(116,056,329 - 116,057,259)
sequence
gaattctcttctcactgtaaataacccacatgcatgtgtggggcctgaaa
actgatttcagatgcacataaaacgtagaaccatcccttgcaggcttact
cagctggcctgcttgaccgtgtccttatcttttgccaccagttgaaacaa
aatgagcaactgattgctctgttaacccagcttctacccagacctcagga
agcataaagcatcctacctgacccgaccctcgcctctcatctctgtctct
gaagagaaaggaaagaataacatagtcaaagcctgattaccagcaggcta
gcatcctctggcacacagagaatgttaaatcaattattctacaaatttga
ggtggtccaactaacttacttccttttgctcttgcaagcccatttcccgt
tattttcagaggtcagggaaaagtgtgaatgggaaatcttgggcccccca
tctcaactgtcttttccttccatcaatgtgtcttcctttcacttcaggaa
agacgtgagagtacacaaggaccccaactcacagggtctgtcctgcagcc
agccctcaggactacagtgtacatgacttcctttgggaataaataccaaa
caggatcaagccggacctgacattagctcggagacagtttgtcatggtcc
agaggacagggcttgacttccggtgggaagatcacctttgtttgctaccc
ttctcaatctctagagaagtgtttggctagaggaaagccagagtaggccc
aggcaggagacctggtcacccagtcctaatactgacactgtctgcttaat
cgtcttttcttcaccctaagaccccaccagagtgatcactgcctcttcag
gtgacatcgctgtcacaatggtaatcatttctcccagcatttctcccaga
atttctcccagcatttatttgaccaaattgtggactaatgggaatttgat
ggaagcctctgggctatatacacaagtggtatcttgcctgaattacccct
tcagaactagaaacaataaccttggggatctcttattaacatttattata
tggtcctcaggatcgcagtggcaaggggcctgggcctccctctttgtttt

gaattcagaagaatgtgacagataccaaggagctagagttgtagacagtt
gtgagccacctgaagtgggtgctgggacctgaactcagaccctgggtaag
agcaatctgtacttttagtcgctaagccatttctccggctctcaaatggt
gttttaatacatgctccaaattaagtattatagtttcaaagtagaatata
aagactggaaggtgcttccataaacatcatggcagctccaaagacaaaag
gacctttgttgtggacagcagacatgtgatagaggaggcaaagaacagca
ctgaaaagtcatcaaactgaaaaggaggttaatacatccagcatgaagga
aacagaagacagaacatcacaaaggaaatgaagcgacaaatcctaccgaa
caatgattgctcggaatgtaactttaatccatgggagctgaacagaattt
gttaaagaaacaaccagaactctatcacacgctgctgatgtgcgactgca
gcgttgggggaacacgaggactgataagaaaggaaataaaaagatgtttc
ttgtgaatcagtgcaggaggagctgttcttacatccagcaaaattcattt
aagtaaaaaaactgtcaccgcagagaaaggtcattatatcaatagtataa
taaaagggtcatcaggagggtgcaataattataaccaggtagacaatcaa
ccatgaagtaactaagtcaatacagcaaacaataatggcacttaagagac
aagtagaaagcaataacataatactaagagaccttggtacctcacattaa
aaaccaatagatcgcagaaacaaaaaaaaaaaattacaagaaaaaccttg
aacttaaaatatataagccaaacggaactagcgtgtataaatgaaatttt
catccagtggtgacaagaatacatgttctgttcagtgcacacagaacatt
tccagatggatcgtacatttggtcacaacaaaatgacttaaaatgattga
tacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_116195188_116196279
seq2: B6Ng01-276E13.b_44_1143 (reverse)

seq1  AAAACAAAGGAGGAGGCCAAGGCCC--TG-CACTGCGAT-CTGAGGA-CA  45
      |||||||||  ||||||| ||||||  || ||||||||| ||||||| ||
seq2  AAAACAAAGAGGGAGGCCCAGGCCCCTTGCCACTGCGATCCTGAGGACCA  50

seq1  TAT-ATAAATGTTAAT-AGAGAT-CCCAAGGTTA-TGTTTCTAGTTCTG-  90
      ||| |||||||||||| |||||| |||||||||| |||||||||||||| 
seq2  TATAATAAATGTTAATAAGAGATCCCCAAGGTTATTGTTTCTAGTTCTGA  100

seq1  AGGGGTAATTTCAGGCAAGATACCACTTTGTGTATATAGCCCAGAGGCTT  140
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  AGGGGTAA-TTCAGGCAAGATACCAC-TTGTGTATATAGCCCAGAGGCTT  148

seq1  CCATCAAATTCCCATTAGTCCACAATTTGGTCAAATAAATGCTGGGAGAA  190
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAATTCCCATTAGTCCACAATTTGGTCAAATAAATGCTGGGAGAA  198

seq1  ATTCTGGGAGAAATGCTGGGAGAAATGATTACCATTGTGACAGCGATGTC  240
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGGGAGAAATGCTGGGAGAAATGATTACCATTGTGACAGCGATGTC  248

seq1  ACCTGAAGAGGCAGTGATCACTCTGGTGGGGTCTTAGGGTGAAGAAAAGA  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAGAGGCAGTGATCACTCTGGTGGGGTCTTAGGGTGAAGAAAAGA  298

seq1  CGATTAAGCAGACAGTGTCAGTATTAGGACTGGGTGACCAGGTCTCCTGC  340
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATTAAGCAGACAGTGTCAGTATTAGGACTGGGTGACCAGGTCTCCTGC  348

seq1  CTGGGCCTACTCTGGCTTTCCTCTAGCCAAACACTTCTCTAGAGATTGAG  390
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCTACTCTGGCTTTCCTCTAGCCAAACACTTCTCTAGAGATTGAG  398

seq1  AAGGGTAGCAAACAAAGGTGATCTTCCCACCGGAAGTCAAGCCCTGTCCT  440
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGTAGCAAACAAAGGTGATCTTCCCACCGGAAGTCAAGCCCTGTCCT  448

seq1  CTGGACCATGACAAACTGTCTCCGAGCTAATGTCAGGTCCGGCTTGATCC  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACCATGACAAACTGTCTCCGAGCTAATGTCAGGTCCGGCTTGATCC  498

seq1  TGTTTGGTATTTATTCCCAAAGGAAGTCATGTACACTGTAGTCCTGAGGG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGGTATTTATTCCCAAAGGAAGTCATGTACACTGTAGTCCTGAGGG  548

seq1  CTGGCTGCAGGACAGACCCTGTGAGTTGGGGTCCTTGTGTACTCTCACGT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTGCAGGACAGACCCTGTGAGTTGGGGTCCTTGTGTACTCTCACGT  598

seq1  CTTTCCTGAAGTGAAAGGAAGACACATTGATGGAAGGAAAAGACAGTTGA  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGAAGTGAAAGGAAGACACATTGATGGAAGGAAAAGACAGTTGA  648

seq1  GATGGGGGGCCCAAGATTTCCCATTCACACTTTTCCCTGACCTCTGAAAA  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGGGGCCCAAGATTTCCCATTCACACTTTTCCCTGACCTCTGAAAA  698

seq1  TAACGGGAAATGGGCTTGCAAGAGCAAAAGGAAGTAAGTTAGTTGGACCA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGGGAAATGGGCTTGCAAGAGCAAAAGGAAGTAAGTTAGTTGGACCA  748

seq1  CCTCAAATTTGTAGAATAATTGATTTAACATTCTCTGTGTGCCAGAGGAT  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAATTTGTAGAATAATTGATTTAACATTCTCTGTGTGCCAGAGGAT  798

seq1  GCTAGCCTGCTGGTAATCAGGCTTTGACTATGTTATTCTTTCCTTTCTCT  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCCTGCTGGTAATCAGGCTTTGACTATGTTATTCTTTCCTTTCTCT  848

seq1  TCAGAGACAGAGATGAGAGGCGAGGGTCGGGTCAGGTAGGATGCTTTATG  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGACAGAGATGAGAGGCGAGGGTCGGGTCAGGTAGGATGCTTTATG  898

seq1  CTTCCTGAGGTCTGGGTAGAAGCTGGGTTAACAGAGCAATCAGTTGCTCA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGAGGTCTGGGTAGAAGCTGGGTTAACAGAGCAATCAGTTGCTCA  948

seq1  TTTTGTTTCAACTGGTGGCAAAAGATAAGGACACGGTCAAGCAGGCCAGC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTCAACTGGTGGCAAAAGATAAGGACACGGTCAAGCAGGCCAGC  998

seq1  TGAGTAAGCCTGCAAGGGATGGTTCTACGTTTTATGTGCATCTGAAATCA  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTAAGCCTGCAAGGGATGGTTCTACGTTTTATGTGCATCTGAAATCA  1048

seq1  GTTTTCAGGCCCCACACATGCATGTGGGTTATTTACAGTGAGAAGAGAAT  1090
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAGGCCCCACACATGCATGTGGGTTATTTACAGTGAGAAGAGAAT  1098

seq1  TC  1092
      ||
seq2  TC  1100

seq1: chr10_116056329_116057259
seq2: B6Ng01-276E13.g_67_999

seq1  GAATTCAGAAGAATGTGACAGATACCAAGGAGCTAGAGTTGTAGACAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGAATGTGACAGATACCAAGGAGCTAGAGTTGTAGACAGTT  50

seq1  GTGAGCCACCTGAAGTGGGTGCTGGGACCTGAACTCAGACCCTGGGTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCACCTGAAGTGGGTGCTGGGACCTGAACTCAGACCCTGGGTAAG  100

seq1  AGCAATCTGTACTTTTAGTCGCTAAGCCATTTCTCCGGCTCTCAAATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCTGTACTTTTAGTCGCTAAGCCATTTCTCCGGCTCTCAAATGGT  150

seq1  GTTTTAATACATGCTCCAAATTAAGTATTATAGTTTCAAAGTAGAATATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAATACATGCTCCAAATTAAGTATTATAGTTTCAAAGTAGAATATA  200

seq1  AAGACTGGAAGGTGCTTCCATAAACATCATGGCAGCTCCAAAGACAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGGAAGGTGCTTCCATAAACATCATGGCAGCTCCAAAGACAAAAG  250

seq1  GACCTTTGTTGTGGACAGCAGACATGTGATAGAGGAGGCAAAGAACAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTTGTTGTGGACAGCAGACATGTGATAGAGGAGGCAAAGAACAGCA  300

seq1  CTGAAAAGTCATCAAACTGAAAAGGAGGTTAATACATCCAGCATGAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAAGTCATCAAACTGAAAAGGAGGTTAATACATCCAGCATGAAGGA  350

seq1  AACAGAAGACAGAACATCACAAAGGAAATGAAGCGACAAATCCTACCGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAAGACAGAACATCACAAAGGAAATGAAGCGACAAATCCTACCGAA  400

seq1  CAATGATTGCTCGGAATGTAACTTTAATCCATGGGAGCTGAACAGAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGATTGCTCGGAATGTAACTTTAATCCATGGGAGCTGAACAGAATTT  450

seq1  GTTAAAGAAACAACCAGAACTCTATCACACGCTGCTGATGTGCGACTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGAAACAACCAGAACTCTATCACACGCTGCTGATGTGCGACTGCA  500

seq1  GCGTTGGGGGAACACGAGGACTGATAAGAAAGGAAATAAAAAGATGTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTGGGGGAACACGAGGACTGATAAGAAAGGAAATAAAAAGATGTTTC  550

seq1  TTGTGAATCAGTGCAGGAGGAGCTGTTCTTACATCCAGCAAAATTCATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGAATCAGTGCAGGAGGAGCTGTTCTTACATCCAGCAAAATTCATTT  600

seq1  AAGTAAAAAAACTGTCACCGCAGAGAAAGGTCATTATATCAATAGTATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAAAAAACTGTCACCGCAGAGAAAGGTCATTATATCAATAGTATAA  650

seq1  TAAAAGGGTCATCAGGAGGGTGCAATAATTATAACCAGGTAGACAATCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGGGTCATCAGGAGGGTGCAATAATTATAACCAGGTAGACAATCAA  700

seq1  CCATGAAGTAACTAAGTCAATACAGCAAACAATAATGGCACTTAAGAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAGTAACTAAGTCAATACAGCAAACAATAATGGCACTTAAGAGAC  750

seq1  AAGTAGAAAGCAATAACATAATACTAAGAGACCTTGGTACCTCACATTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAGAAAGCAATAACATAATACTAAGAGACCTTGGTACCTCACATTAA  800

seq1  AAACCAATAGATCGCAGAAAC-AAAAAAAAAAATTACAAG-AAAACCTTG  848
      ||||||||||||||||||||| |||||||||||||||||| |||||||||
seq2  AAACCAATAGATCGCAGAAACAAAAAAAAAAAATTACAAGAAAAACCTTG  850

seq1  AACTTAAAATATATAAGCCAAACGGAACTAGCGTGTATAAATGAAATTTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTAAAATATATAAGCCAAACGGAACTAGCGTGTATAAATGAAATTTT  900

seq1  CATCCAGTGGTGACAAGAATACATGTTCTGTTC  931
      |||||||||||||||||||||||||||||||||
seq2  CATCCAGTGGTGACAAGAATACATGTTCTGTTC  933