BAC Information

Click to search

BAC

Clone NameB6Ng01-277A21
Chromosome10 (Build37)
Map Location 16,652,071 - 16,801,983
singlet/doubletdoublet
Overlap geneLOC627511
Upstream geneLOC382457, LOC546472, LOC100039576
Downstream geneCited2, Txlnb, LOC665321, Heca, 3110003A17Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-277A21.bB6Ng01-277A21.g
ACCGA077676GA077677
length1,1601,076
definitionB6Ng01-277A21.b B6Ng01-277A21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,652,071 - 16,653,224)(16,800,892 - 16,801,983)
sequence
gaattcactgcaatatcagcattgcttgctctcttactgaactcttcacc
acctcagaccttgaaagaaactgcatttcatccatcaccccagaatccat
gccctctatttattccactgcacaaaagaattcagaactgcacaagtata
ttttctagccctttcgaaagtcaaaactcttattttattgaatttcaagc
tttgtgctcaatcagaattcacaatttgatcccagatagagattattttt
ttaaaaatataggacagactttgagattaaaatggatatgtcatagctat
gaagtgtcggggcaatgcagagtcacagaatttgcagggaggaaaaatga
accacttacttaattcattaaaaaatcactatttttcaagttaaaatata
aagctaagttgcacatagttgaattatttatctgcaaacataaagtaagg
ttgtttttcgagccattgttccataaacctactagcattttagagaccat
attctttttattcacttttctattgattttttttataaactaccaatgta
agtataaattatttttctggaaaatgttttcagatgcctacacgtgcatg
tggacacacatgaagctgatctgttagaaattcattctagatagacagat
aaattctctctcgcttcatgtttcttctaccttaatttagttatcactgt
aggctatatgcttacagtcagaaatgaaataatctctttccctgagttgc
cttagtctagttatttttaaatagtgacaggaaaagaaagtaagacagcc
actattctgaaatatttcgacaaatatttgtcatagatcagagtacttac
ctatatatagtaacaaatatgcactacataagcaaatatacccaccatct
ctaaatatgtttcatggggaaaagataattttccttgtattcttggaagt
gaaacatggagaagataattgatgagagatactaagcatgataattttat
tattatagactactaaaggattaggtttggaatgaatggaggttatttac
tttgggaatagacttcctttaaagggaaacaatctaaaactaatggcttt
cactatcttctaatgggcattcctggaattattgatttgaaataccaata
aacttggcta

gaattctttgtttagctctgtgctccattttttaatggggttatttggtt
ttctggagtccatcttcttgagttctttatttatattggatattagtccc
ctatctgatttacgattggtaaagatcctttcccaatctgttggtggcct
ttagtggcaatatagaaaccgtggtcacaaagatacaaatccagtaagtg
ggttgacccagttgctgaggaacatgccttttgccaagaagcacaacaag
aaaggcctgaagaaaatgcaggccagcagcggctgtcaaggcccctgtga
agtctgaggcaattaaacccaagatgccaaagggcctcagctgaaaattc
tgctgtctcaccctcattgttcactcaccagaagcttatgaagcagattt
gaagctacatagccaagggggataggctctgccaaccaaagcccaaggtt
caaaccaaggcagaggccccagctccagctaaggctcaggctccagctcc
agctcaggctcctgaggtacccaggcccctgtgaaggccccatagaaaag
gctcctgccagtgtgaagacagatggacacacctccccacatactattta
cagatgaggtgtgtcctatgctgtttttacaaataaacttgaggcaagat
ctgttttattaaaaaaaaaaaaggcaaaagaaaagtaaaaaaagtagaaa
gaaagcttggggagatgggaggtgaccaagagcagtgcctgctctgtctg
aagacctaagttcagttcccagtacaaatgttggatggctgacagatgcc
tgtacctctaacaacagagtgtcagatgctgtcttctggcctctgtaggc
accctcaaagaagtagcttgcacacacacacacacacacacacacacaca
cacacacctgggtcacttgatacatacatataaataataaacataggtaa
aattctgtacaaagagagagggctgaagacaatctagtcattgcatgtgc
tacgcagctacgcgacccacatgttctgttttttaggtgccaaccataat
aaaaatgtaacgaactgtctaagcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_16652071_16653224
seq2: B6Ng01-277A21.b_47_1206

seq1  GAATTCACTGCAATATCAGCATTGCTTGCTCTCTTACTGAACTCTTCACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGCAATATCAGCATTGCTTGCTCTCTTACTGAACTCTTCACC  50

seq1  ACCTCAGACCTTGAAAGAAACTGCATTTCATCCATCACCCCAGAATCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCAGACCTTGAAAGAAACTGCATTTCATCCATCACCCCAGAATCCAT  100

seq1  GCCCTCTATTTATTCCACTGCACAAAAGAATTCAGAACTGCACAAGTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTATTTATTCCACTGCACAAAAGAATTCAGAACTGCACAAGTATA  150

seq1  TTTTCTAGCCCTTTCGAAAGTCAAAACTCTTATTTTATTGAATTTCAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTAGCCCTTTCGAAAGTCAAAACTCTTATTTTATTGAATTTCAAGC  200

seq1  TTTGTGCTCAATCAGAATTCACAATTTGATCCCAGATAGAGATTATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGCTCAATCAGAATTCACAATTTGATCCCAGATAGAGATTATTTTT  250

seq1  TTAAAAATATAGGACAGACTTTGAGATTAAAATGGATATGTCATAGCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATATAGGACAGACTTTGAGATTAAAATGGATATGTCATAGCTAT  300

seq1  GAAGTGTCGGGGCAATGCAGAGTCACAGAATTTGCAGGGAGGAAAAATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGTCGGGGCAATGCAGAGTCACAGAATTTGCAGGGAGGAAAAATGA  350

seq1  ACCACTTACTTAATTCATTAAAAAATCACTATTTTTCAAGTTAAAATATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTTACTTAATTCATTAAAAAATCACTATTTTTCAAGTTAAAATATA  400

seq1  AAGCTAAGTTGCACATAGTTGAATTATTTATCTGCAAACATAAAGTAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAGTTGCACATAGTTGAATTATTTATCTGCAAACATAAAGTAAGG  450

seq1  TTGTTTTTCGAGCCATTGTTCCATAAACCTACTAGCATTTTAGAGACCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTCGAGCCATTGTTCCATAAACCTACTAGCATTTTAGAGACCAT  500

seq1  ATTCTTTTTATTCACTTTTCTATTGATTTTTTTTATAAACTACCAATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTATTCACTTTTCTATTGATTTTTTTTATAAACTACCAATGTA  550

seq1  AGTATAAATTATTTTTCTGGAAAATGTTTTCAGATGCCTACACGTGCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAATTATTTTTCTGGAAAATGTTTTCAGATGCCTACACGTGCATG  600

seq1  TGGACACACATGAAGCTGATCTGTTAGAAATTCATTCTAGATAGACAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACACACATGAAGCTGATCTGTTAGAAATTCATTCTAGATAGACAGAT  650

seq1  AAATTCTCTCTCGCTTCATGTTTCTTCTACCTTAATTTAGTTATCACTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTCTCTCGCTTCATGTTTCTTCTACCTTAATTTAGTTATCACTGT  700

seq1  AGGCTATATGCTTACAGTCAGAAATGAAATAATCTCTTTCCCTGAGTTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATATGCTTACAGTCAGAAATGAAATAATCTCTTTCCCTGAGTTGC  750

seq1  CTTAGTCTAGTTATTTTTAAATAGTGACAGGAAAAGAAAGTAAGACAGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTCTAGTTATTTTTAAATAGTGACAGGAAAAGAAAGTAAGACAGCC  800

seq1  ACTATTCTGAAATATTTCGACAAATATTTGTCATAGATCAGAGTACTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCTGAAATATTTCGACAAATATTTGTCATAGATCAGAGTACTTAC  850

seq1  CTATATATAGTAACAAATATGCACTACATAAGCAAATATACCCACCATCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATATAGTAACAAATATGCACTACATAAGCAAATATACCCACCATCT  900

seq1  CTAAATATGTTTCATGGGGAAAAGATAATTTTCCTTGTATTCTTGGAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATATGTTTCATGGGGAAAAGATAATTTTCCTTGTATTCTTGGAAGT  950

seq1  GAAACATGGAGAAGATAAATTGATGAGAGATACTAAGCATGATAATTT--  998
      |||||||||||||||| |||||||||||||||||||||||||||||||  
seq2  GAAACATGGAGAAGAT-AATTGATGAGAGATACTAAGCATGATAATTTTA  999

seq1  ATATTATAGACTACTAAA-GATTA-GTTTGAAATGAATGGAGGTTATTTA  1046
       ||||||||||||||||| ||||| ||||| |||||||||||||||||||
seq2  TTATTATAGACTACTAAAGGATTAGGTTTGGAATGAATGGAGGTTATTTA  1049

seq1  CTT--GGGATAGAC-TCCTT--AAGGGAAACAATCT-AAACTATTGGTCT  1090
      |||  || |||||| |||||  |||||||||||||| |||||| ||| ||
seq2  CTTTGGGAATAGACTTCCTTTAAAGGGAAACAATCTAAAACTAATGG-CT  1098

seq1  TTCACTTATCTTCTTATGGCCATT-CTTGAATTATTTAATTTTAAAATAC  1139
      ||||| |||||||| |||| |||| || |||||||| |  ||| ||||||
seq2  TTCAC-TATCTTCTAATGGGCATTCCTGGAATTATTGA--TTTGAAATAC  1145

seq1  CAATAACATTGGCTA  1154
      ||||||  |||||||
seq2  CAATAAACTTGGCTA  1160


seq1: chr10_16800892_16801983
seq2: B6Ng01-277A21.g_63_1138 (reverse)

seq1  CTGCTTAGACAAGTCGTTCCACATTTTTAATTTATTTGTTTGCAC--TAA  48
      |||||||||||  |||||  |||||||||  ||| | ||| ||||   ||
seq2  CTGCTTAGACAGTTCGTT--ACATTTTTA--TTA-TGGTTGGCACCTAAA  45

seq1  AAACAGAACATGTGGTGTCGCCGGTAGGCTGCGTAAGCACATTGCCAATG  98
      ||||||||||||||| |||||  ||| ||||||| |||||||   |||||
seq2  AAACAGAACATGTGG-GTCGC--GTA-GCTGCGT-AGCACAT--GCAATG  88

seq1  ACCTAGATTGTCTTCAGCCCTCTTCTTCCTTTGTACAAGAATTTTTACCT  148
      | |||||||||||||||||||| |||  |||||||| |||| ||||||| 
seq2  A-CTAGATTGTCTTCAGCCCTC-TCT--CTTTGTAC-AGAA-TTTTACC-  131

seq1  TATGTTTATTATTTATATGTATGTATCAAGTGA-CCAGGTGTGTGTGTGT  197
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TATGTTTATTATTTATATGTATGTATCAAGTGACCCAGGTGTGTGTGTGT  181

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGCAAGCTACTTCTTTGAGGGTGCCTA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGCAAGCTACTTCTTTGAGGGTGCCTA  231

seq1  CAGAGGCCAGAAGACAGCATCTGACACTCTGTTGTTAGAGGTACAGGCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCCAGAAGACAGCATCTGACACTCTGTTGTTAGAGGTACAGGCAT  281

seq1  CTGTCAGCCATCCAACATTTGTACTGGGAACTGAACTTAGGTCTTCAGAC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGCCATCCAACATTTGTACTGGGAACTGAACTTAGGTCTTCAGAC  331

seq1  AGAGCAGGCACTGCTCTTGGTCACCTCCCATCTCCCCAAGCTTTCTTTCT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGCACTGCTCTTGGTCACCTCCCATCTCCCCAAGCTTTCTTTCT  381

seq1  ACTTTTTTTACTTTTCTTTTGCCTTTTTTTTTTTTAATAAAACAGATCTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTACTTTTCTTTTGCCTTTTTTTTTTTTAATAAAACAGATCTT  431

seq1  GCCTCAAGTTTATTTGTAAAAACAGCATAGGACACACCTCATCTGTAAAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAGTTTATTTGTAAAAACAGCATAGGACACACCTCATCTGTAAAT  481

seq1  AGTATGTGGGGAGGTGTGTCCATCTGTCTTCACACTGGCAGGAGCCTTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGTGGGGAGGTGTGTCCATCTGTCTTCACACTGGCAGGAGCCTTTT  531

seq1  CTATGGGGCCTTCACAGGGGCCTGGGTACCTCAGGAGCCTGAGCTGGAGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGGGCCTTCACAGGGGCCTGGGTACCTCAGGAGCCTGAGCTGGAGC  581

seq1  TGGAGCCTGAGCCTTAGCTGGAGCTGGGGCCTCTGCCTTGGTTTGAACCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCTGAGCCTTAGCTGGAGCTGGGGCCTCTGCCTTGGTTTGAACCT  631

seq1  TGGGCTTTGGTTGGCAGAGCCTATCCCCCTTGGCTATGTAGCTTCAAATC  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTTGGTTGGCAGAGCCTATCCCCCTTGGCTATGTAGCTTCAAATC  681

seq1  TGCTTCATAAGCTTCTGGTGAGTGAACAATGAGGGTGAGACAGCAGAATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCATAAGCTTCTGGTGAGTGAACAATGAGGGTGAGACAGCAGAATT  731

seq1  TTCAGCTGAGGCCCTTTGGCATCTTGGGTTTAATTGCCTCAGACTTCACA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTGAGGCCCTTTGGCATCTTGGGTTTAATTGCCTCAGACTTCACA  781

seq1  GGGGCCTTGACAGCCGCTGCTGGCCTGCATTTTCTTCAGGCCTTTCTTGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCCTTGACAGCCGCTGCTGGCCTGCATTTTCTTCAGGCCTTTCTTGT  831

seq1  TGTGCTTCTTGGCAAAAGGCATGTTCCTCAGCAACTGGGTCAACCCACTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCTTGGCAAAAGGCATGTTCCTCAGCAACTGGGTCAACCCACTT  881

seq1  ACTGGATTTGTATCTTTGTGACCACGGTTTCTATATTGCCACTAAAGGCC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATTTGTATCTTTGTGACCACGGTTTCTATATTGCCACTAAAGGCC  931

seq1  ACCAACAGATTGGGAAAGGATCTTTACCAATCGTAAATCAGATAGGGGAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACAGATTGGGAAAGGATCTTTACCAATCGTAAATCAGATAGGGGAC  981

seq1  TAATATCCAATATAAATAAAGAACTCAAGAAGATGGACTCCAGAAAACCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCCAATATAAATAAAGAACTCAAGAAGATGGACTCCAGAAAACCA  1031

seq1  AATAACCCCATTAAAAAATGGAGCACAGAGCTAAACAAAGAATTC  1092
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAACCCCATTAAAAAATGGAGCACAGAGCTAAACAAAGAATTC  1076


| Home | SequenceCutter | Blast | Download |