BAC Information

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BAC

Clone NameB6Ng01-279D24
Chromosome10 (Build37)
Map Location 76,560,768 - 76,715,806
singlet/doubletdoublet
Overlap geneCol18a1, LOC665762
Upstream geneSlc5a4b, Slc5a4a, LOC100040150, Prmt2, S100b, Dip2a, Pcnt, 2610028H24Rik, A130042E20Rik, Mcm3ap, Lss, 1700027D21Rik, Ftcd, Col6a2, Col6a1, Pcbp3, LOC100041099, Slc19a1
Downstream genePofut2, Adarb1, 1810008A18Rik, Itgb2, Pttg1ip, Sumo3, Ube2g2, LOC674243, LOC670895, Krtap12-1, A030009A09Rik, LOC100041250, LOC100041261, LOC634517, LOC100041281, LOC634504, LOC675294, LOC670880, LOC100040299, LOC675238, C330046G03Rik, EG544710, LOC100041351, 1700009J07Rik, Lrrc3, Trpm2, 1810043G02Rik, Pfkl, Aire, Dnmt3l, Icosl, D10Jhu81e, Pwp2, Tmem1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279D24.bB6Ng01-279D24.g
ACCGA079278GA079279
length1,1401,150
definitionB6Ng01-279D24.b B6Ng01-279D24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,714,667 - 76,715,806)(76,560,768 - 76,561,931)
sequence
gaattctgctgtacctcatgcaaccacaagagggcgagagagagcctttc
tctagaagttcctgccggaggtgggaaatactagcagacctagcagacac
aatgggaagagtgggtggtcagaccagggctgagcccagaagtagacaaa
aggggtacagaccacccggtcttgttcctagagaactcctccaagatcag
gctttggtcctccatgcagctggtgcctgacaactgaagtcacctacaaa
gataaggctaagatcctcactagaggagagaaaaagccctatttgatctc
agcctaggtatatcttgtagttcacagggccacacttagaaatgtccaaa
gttttatacacagacagacagacacacatacacacacacgcgcactcaag
gctttatctgtccccatcaggtatcagaaaaatgtcccattcccttgaga
gaacagtgtcttgaggtgggaaaggtcctgggcctgctgccctcaggagc
aaggaggttctcctttgaaacagacagacccctgtggaagttggggcccc
gtagtgcagggatagggatgtgggaacaagtcgggagaggcaccgcgaaa
ggagctggctccctgccctgcttggggacagctatgcagtcatgtgacga
agtagaagccacatgcatagacacccagcggggactatagaatgggcgga
gaggtatacagtaggggcaaactggtagccaccatgggccagggcagagg
gtgggaaagtatcttaggaactgcatgatagcccttgagaccacaccaca
gttatgaagtaggtcaagagttgaaccgctgcccatagaggccaccaaag
ggagccagatggtgggagcaataggctggccacagaccaggagtccagac
actgggaaactggtgtcttggggcacagacatgcacatcccagcccgact
tttctatttactgagtcagttaccaggattcacatgttgaagttggggct
tttgtgtggaattccacccttcttcgctcacatcattccgtgtaataaat
ccttgcctttgtccctgaaatgtgcagaaggtgacctcggttgttgagtc
ataagccggtcagaagttacgattttgtatatctatggct
gaattcttttttggctctgttgagaggagctgccaaatgccaggaccata
agatcaccagctctcttctctggttacagcaatggcgagcggggaagggc
ctgggtgcctatgccaggaaacccattcccctgtaagaagcaaagcctgt
gccatgctctgagagggctgatgcaggaggctggcccctctgcatgctaa
ggcctgttgagtcactcacatgagctgagatccaagatgagctgagtcct
acatggttaacgcccaccttcccaaaagtgagcaggcatagttctttctg
aaagcctatattttaatgcacatgcttcatatagaaccaactgcagtcag
catcccccccccccccgaaaagcacagccaaggcttggctctggagggac
cagcagcaagaacgtctggtgctccccaactgactgcaccaggctcccgg
tggtacgggaacccctgacagcctccctccctggactacagccaatctat
tcccttcacaggcaacctcaccaagcaggacctggtttgagaacattgag
ggcaaacggtgcagccgtttggcaaggggtagccatcagcaagggctcag
taatggcaaatgtcatgagaaaaatgacccttaccagggactctggcagc
cccagagcaagaaggcacactctcttactgaatacctctaagcaggagac
aaccctgtccctcagaaggctcctggccaatcctgatatctgcctaccct
ggagaaaggcttccaactaggccagtatctattggcttgctcagggactt
ctctaatggaatagaacaaacctctcaccctgtatgactagtacttctga
catgcagagccccacagcttgccaactggttctcccagggaatgtagcct
ggggactgtgcatccatccctaggccgggccactgagctttcccccacac
acctcctagggctgctgtgtgcaggctcagctggggcaacccgtcagctc
tctcagcttacaatcctgtagactcagctgtggcagccctgcccccacag
agcttagctgagtcggcagaatgtgcatctagtgcttcagaccaggtaga
ttccaactatcatgattccctcgtccagcctaggagagcaatttctgaga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_76714667_76715806
seq2: B6Ng01-279D24.b_45_1184 (reverse)

seq1  AGCCATAGATACA-AAAACCGGAACTCCCTGCCCGGCTGGTGACTC-ACA  48
      ||||||||||| | |||| || ||||  ||| ||||||  |||||| |||
seq2  AGCCATAGATATACAAAATCGTAACT-TCTGACCGGCTTATGACTCAACA  49

seq1  CACGA-GTCACCTCCCTGCACATTTCCAGGGACAAAGCCAGGATTTTATT  97
        ||| |||||||  |||||||||| ||||||||||| || |  ||||||
seq2  ACCGAGGTCACCT-TCTGCACATTT-CAGGGACAAAGGCAAGGATTTATT  97

seq1  ACCACGGAATGATGGTGAGCGA--GAGGGTGGAATTCCACACAAAAGCCC  145
      | ||||||||||| ||||||||   |||||||||||||||||||||||||
seq2  A-CACGGAATGAT-GTGAGCGAAGAAGGGTGGAATTCCACACAAAAGCCC  145

seq1  CAAACTTCAACATGTGAATCCTGGTAACTGACTCAGTAAATAGAAAAGTC  195
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-AACTTCAACATGTGAATCCTGGTAACTGACTCAGTAAATAGAAAAGTC  194

seq1  GGGCTGGGATGTGCATGTCTGTGCCCCAAGACACCAG-TTCCCAGTGTCT  244
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GGGCTGGGATGTGCATGTCTGTGCCCCAAGACACCAGTTTCCCAGTGTCT  244

seq1  GGACTCCTGGTCTGTGGCCAGCCTATTGCTCCCACCATCTGGCTCCCTTT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTCCTGGTCTGTGGCCAGCCTATTGCTCCCACCATCTGGCTCCCTTT  294

seq1  GGTGGCCTCTATGGGCAGCGGTTCAACTCTTGACCTACTTCATAACTGTG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCCTCTATGGGCAGCGGTTCAACTCTTGACCTACTTCATAACTGTG  344

seq1  GTGTGGTCTCAAGGGCTATCATGCAGTTCCTAAGATACTTTCCCACCCTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGTCTCAAGGGCTATCATGCAGTTCCTAAGATACTTTCCCACCCTC  394

seq1  TGCCCTGGCCCATGGTGGCTACCAGTTTGCCCCTACTGTATACCTCTCCG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGGCCCATGGTGGCTACCAGTTTGCCCCTACTGTATACCTCTCCG  444

seq1  CCCATTCTATAGTCCCCGCTGGGTGTCTATGCATGTGGCTTCTACTTCGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCTATAGTCCCCGCTGGGTGTCTATGCATGTGGCTTCTACTTCGT  494

seq1  CACATGACTGCATAGCTGTCCCCAAGCAGGGCAGGGAGCCAGCTCCTTTC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGACTGCATAGCTGTCCCCAAGCAGGGCAGGGAGCCAGCTCCTTTC  544

seq1  GCGGTGCCTCTCCCGACTTGTTCCCACATCCCTATCCCTGCACTACGGGG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTGCCTCTCCCGACTTGTTCCCACATCCCTATCCCTGCACTACGGGG  594

seq1  CCCCAACTTCCACAGGGGTCTGTCTGTTTCAAAGGAGAACCTCCTTGCTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAACTTCCACAGGGGTCTGTCTGTTTCAAAGGAGAACCTCCTTGCTC  644

seq1  CTGAGGGCAGCAGGCCCAGGACCTTTCCCACCTCAAGACACTGTTCTCTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGCAGCAGGCCCAGGACCTTTCCCACCTCAAGACACTGTTCTCTC  694

seq1  AAGGGAATGGGACATTTTTCTGATACCTGATGGGGACAGATAAAGCCTTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGAATGGGACATTTTTCTGATACCTGATGGGGACAGATAAAGCCTTG  744

seq1  AGTGCGCGTGTGTGTGTATGTGTGTCTGTCTGTCTGTGTATAAAACTTTG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCGCGTGTGTGTGTATGTGTGTCTGTCTGTCTGTGTATAAAACTTTG  794

seq1  GACATTTCTAAGTGTGGCCCTGTGAACTACAAGATATACCTAGGCTGAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTCTAAGTGTGGCCCTGTGAACTACAAGATATACCTAGGCTGAGA  844

seq1  TCAAATAGGGCTTTTTCTCTCCTCTAGTGAGGATCTTAGCCTTATCTTTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATAGGGCTTTTTCTCTCCTCTAGTGAGGATCTTAGCCTTATCTTTG  894

seq1  TAGGTGACTTCAGTTGTCAGGCACCAGCTGCATGGAGGACCAAAGCCTGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGACTTCAGTTGTCAGGCACCAGCTGCATGGAGGACCAAAGCCTGA  944

seq1  TCTTGGAGGAGTTCTCTAGGAACAAGACCGGGTGGTCTGTACCCCTTTTG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGAGGAGTTCTCTAGGAACAAGACCGGGTGGTCTGTACCCCTTTTG  994

seq1  TCTACTTCTGGGCTCAGCCCTGGTCTGACCACCCACTCTTCCCATTGTGT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTTCTGGGCTCAGCCCTGGTCTGACCACCCACTCTTCCCATTGTGT  1044

seq1  CTGCTAGGTCTGCTAGTATTTCCCACCTCCGGCAGGAACTTCTAGAGAAA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGGTCTGCTAGTATTTCCCACCTCCGGCAGGAACTTCTAGAGAAA  1094

seq1  GGCTCTCTCTCGCCCTCTTGTGGTTGCATGAGGTACAGCAGAATTC  1140
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTCTCTCGCCCTCTTGTGGTTGCATGAGGTACAGCAGAATTC  1140

seq1: chr10_76560768_76561931
seq2: B6Ng01-279D24.g_65_1214

seq1  GAATTCTTTTTTGGCTCTGTTGAGAGGAGCTGCCAAATGCCAGGACCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTTTGGCTCTGTTGAGAGGAGCTGCCAAATGCCAGGACCATA  50

seq1  AGATCACCAGCTCTCTTCTCTGGTTACAGCAATGGCGAGCGGGGAAGGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCACCAGCTCTCTTCTCTGGTTACAGCAATGGCGAGCGGGGAAGGGC  100

seq1  CTGGGTGCCTATGCCAGGAAACCCATTCCCCTGTAAGAAGCAAAGCCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGCCTATGCCAGGAAACCCATTCCCCTGTAAGAAGCAAAGCCTGT  150

seq1  GCCATGCTCTGAGAGGGCTGATGCAGGAGGCTGGCCCCTCTGCATGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCTCTGAGAGGGCTGATGCAGGAGGCTGGCCCCTCTGCATGCTAA  200

seq1  GGCCTGTTGAGTCACTCACATGAGCTGAGATCCAAGATGAGCTGAGTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTTGAGTCACTCACATGAGCTGAGATCCAAGATGAGCTGAGTCCT  250

seq1  ACATGGTTAACGCCCACCTTCCCAAAAGTGAGCAGGCATAGTTCTTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGTTAACGCCCACCTTCCCAAAAGTGAGCAGGCATAGTTCTTTCTG  300

seq1  AAAGCCTATATTTTAATGCACATGCTTCATATAGAACCAACTGCAGTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTATATTTTAATGCACATGCTTCATATAGAACCAACTGCAGTCAG  350

seq1  CATCCCCCCCCCCCCCGAAAAGCACAGCCAAGGCTTGGCTCTGGAGGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCCCCCCCCCCGAAAAGCACAGCCAAGGCTTGGCTCTGGAGGGAC  400

seq1  CAGCAGCAAGAACGTCTGGTGCTCCCCAACTGACTGCACCAGGCTCCCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGCAAGAACGTCTGGTGCTCCCCAACTGACTGCACCAGGCTCCCGG  450

seq1  TGGTACGGGAACCCCTGACAGCCTCCCTCCCTGGACTACAGCCAATCTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTACGGGAACCCCTGACAGCCTCCCTCCCTGGACTACAGCCAATCTAT  500

seq1  TCCCTTCACAGGCAACCTCACCAAGCAGGACCTGGTTTGAGAACATTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTCACAGGCAACCTCACCAAGCAGGACCTGGTTTGAGAACATTGAG  550

seq1  GGCAAACGGTGCAGCCGTTTGGCAAGGGGTAGCCATCAGCAAGGGCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACGGTGCAGCCGTTTGGCAAGGGGTAGCCATCAGCAAGGGCTCAG  600

seq1  TAATGGCAAATGTCATGAGAAAAATGACCCTTACCAGGGACTCTGGCAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGCAAATGTCATGAGAAAAATGACCCTTACCAGGGACTCTGGCAGC  650

seq1  CCCAGAGCAAGAAGGCACACTCTCTTACTGAATACCTCTAAGCAGGAGAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGAGCAAGAAGGCACACTCTCTTACTGAATACCTCTAAGCAGGAGAC  700

seq1  AACCCTGTCCCTCAGAAGGCTCCTGGCCAATCCTGATATCTGCCTACCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCTGTCCCTCAGAAGGCTCCTGGCCAATCCTGATATCTGCCTACCCT  750

seq1  GGAGAAAGGCTTCCAACTAGGCCAGTATCTATTGGCTTGCTCAGGGACTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAGGCTTCCAACTAGGCCAGTATCTATTGGCTTGCTCAGGGACTT  800

seq1  CTCTAATGGAATAGAACAAACCTCTCACCCTGTATGACTAGTACTTCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATGGAATAGAACAAACCTCTCACCCTGTATGACTAGTACTTCTGA  850

seq1  CATGCAGAGCCCCACAGCTTGCCAACTGGTTCTCCCAGGG-ATGTAGCCT  899
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  CATGCAGAGCCCCACAGCTTGCCAACTGGTTCTCCCAGGGAATGTAGCCT  900

seq1  GGGGACTGTGCATCCATCCCTAGGCC-GGCCACTGAGCTTTCCCCCACAC  948
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGGGACTGTGCATCCATCCCTAGGCCGGGCCACTGAGCTTTCCCCCACAC  950

seq1  A-CTCCTAGGGCTGCTGTGTGCAGGGCTCAGGCTGGGGCAACCCGTCCTT  997
      | ||||||||||||||||||||| |||||| ||||||||||||||||   
seq2  ACCTCCTAGGGCTGCTGTGTGCA-GGCTCA-GCTGGGGCAACCCGTC--A  996

seq1  GCTCTCTCCAGCCTACAATTCCTGTAGAACTCAGGCTGTGGCAGCCCTGC  1047
      ||||||| |||| ||||| |||||||| ||||| ||||||||||||||||
seq2  GCTCTCT-CAGCTTACAA-TCCTGTAG-ACTCA-GCTGTGGCAGCCCTGC  1042

seq1  CCCCACAGAGCCTAGGCCTGAGTTCCGCCAG-ATGTGCATCTAGTGCTCC  1096
      ||||||||||| |||  ||||||  || ||| ||||||||||||||||  
seq2  CCCCACAGAGCTTAG--CTGAGT--CGGCAGAATGTGCATCTAGTGCT-T  1087

seq1  CAGACCCCAGGTAGATCTCAACTATCAGTGATCTCCTCGTCCAGCCCTAG  1146
      ||||  ||||||||||  ||||||||| ||||  ||||||||||||    
seq2  CAGA--CCAGGTAGATTCCAACTATCA-TGATTCCCTCGTCCAGCC---T  1131

seq1  AGAAGAGC-ATTTCTGAGA  1164
      || ||||| ||||||||||
seq2  AGGAGAGCAATTTCTGAGA  1150