BAC Information

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BAC

Clone NameB6Ng01-279N13
Chromosome10 (Build37)
Map Location 23,857,047 - 23,857,766
singlet/doubletsinglet
Overlap genenone
Upstream geneEya4, Rps12, 1110021L09Rik, Vnn3, Vnn1, Taar1, Taar2, Taar3, Taar4, Taar5, Taar6, Taar7a, Taar7b, Taar7c-ps, Taar7d, Taar7e, LOC628480, Taar7f, Taar8a, Taar8b, Taar8c, Taar9
Downstream geneStx7, Moxd1, LOC628537, Ctgf, Enpp1, Enpp3, Crsp3, Arg1, EG667479, LOC212399
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-279N13.bB6Ng01-279N13.g
ACCGA079721GA079722
length1,1611,070
definitionB6Ng01-279N13.b B6Ng01-279N13.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcttaactgaggaatactgaatgcacctgaaaaaatgttcaacatc
cttaatcatcagggaaatgcaaatcaaaacaaccctgagattccacctca
caccagtcagaatgactaagatcaaaaattcaggtgacagcagatgctgg
tgagtatgtggagtaagtgggacactcctccattgttggtaggattgcaa
gcttgtacaaccactctggaaatcagtctggtggttcctgagaaagctgt
acatagtactactggaagatgcagtaattcctctcctgggcatataccca
gaagatgttccaacctgtaataaggacacatgctccactatgttcatagc
agccttatttataatagccagaagctggaaagaacccagatgtccctcaa
cagaggaatggatacagaaaatgtggtacatttacacaatggagtactac
tcagctattaaaaaaaatgaactcatgaaattcttaggcaaatggatgga
tctggaggatatcatcctgagtgaggtaacccaatcacaaaagaacacac
atgatatgcactcactgataagtggatattagcccagaagcttagaatat
ccaagatacaatttgcaaaacacatgaaatgcaagaagaaagaccaaagt
gtggatacttcgctccttcttaaaatgaggaacaaaatacccatgtaagg
agttacagagacaaagttcagagctgagacacaaggaaggaccatccaga
gactgccccacctgtggatccattccatatacaaccaccagacccaaaca
ctattgcatatgccagcaagattatgccaacaggactctgacataggtct
ttcttgtgaggctataccagtgcctggcaaatacagaagtggatgctcgc
agtcatctattggatggaacagagggccctcaatgaaagagctagagaaa
gtaccaaaggagttaaaggggtctgcaacgctataggatgaacacaatat
gaactaaccagtactcccccagagctgtatctctagttgcatatgtagca
gagatgtctagtcagtcaatcatgggaggagaggcctgatctggtcagat
catatgcccagtacaggtgaatgccaggccagggaacccggaattgggtg
gggttggggag
gaattctctgtttagctctgttctccaattgatagggttgtttggttctc
tggagtctaacttcctgagttctttgtatatatttgatattagtctccta
tctgatgtagggttggtaaagatccttttccaatctgttggctgccattt
tgtcctattggcagtgtcctttgccttacaaaagctttgcaattttatga
ggtcccatttatgaattcttgatctaagagcataagctctgttctgttta
gggaattttcccctgtgtccatgtgctcaaggttccttcccactttctct
tctattagatttagtgtctctggttttatgtggaggtccttgatgcactt
ggactttgcacaagttgataagaatgcatcaatttgcatttttctacatg
ctgactgccaggtgaaccagtaccctttgttgaatatgctgtcctttttc
cactggatggttttagcttctttgtcaaagatcaagtgaccatatgtgtg
tgggttcatttctggctcttcaattctattccattgatctacctgtctat
ctctgtaccaataccattcagtttttatcatgattgctctgtagtacagc
ttgaggtcagggatggtgattcccccagatgttcctttattgtggagaat
agtttttgatatcctgggttttttgttattccaaatgaatttgagaattt
ctctttttactctatgaagaattgagttggaatattgatggggatttgtg
ctgtatctgtagattgcttttgacaagatgggcatttttactatatatac
atatatatatatatatatatatatacatcgccatacatataacacacaca
catatcataattaaaactcccagtgctgaagaaaattcaaagaattaaaa
aaaattagtaaagattcaaatttttaaattttctttttttttaccagaaa
catcttatttatccacctaaatttcccataatcaaaccccaggggttatt
tctttgaatttccacaagcacagggaaaggaaagggacagggtgcaattg
tatacccccaactccaccca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_23857047_23857766
seq2: B6Ng01-279N13.g_396_1135

seq1  TGGAGGTCCTTGATGCACTTGGACTTTGCACAAGTTGATAAGAATGCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGTCCTTGATGCACTTGGACTTTGCACAAGTTGATAAGAATGCATC  50

seq1  AATTTGCATTTTTCTACATGCTGACTGCCAGGTGAACCAGTACCCTTTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCATTTTTCTACATGCTGACTGCCAGGTGAACCAGTACCCTTTGT  100

seq1  TGAATATGCTGTCCTTTTTCCACTGGATGGTTTTAGCTTCTTTGTCAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATGCTGTCCTTTTTCCACTGGATGGTTTTAGCTTCTTTGTCAAAG  150

seq1  ATCAAGTGACCATATGTGTGTGGGTTCATTTCTGGCTCTTCAATTCTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGTGACCATATGTGTGTGGGTTCATTTCTGGCTCTTCAATTCTATT  200

seq1  CCATTGATCTACCTGTCTATCTCTGTACCAATACCATTCAGTTTTTATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGATCTACCTGTCTATCTCTGTACCAATACCATTCAGTTTTTATCA  250

seq1  TGATTGCTCTGTAGTACAGCTTGAGGTCAGGGATGGTGATTCCCCCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGCTCTGTAGTACAGCTTGAGGTCAGGGATGGTGATTCCCCCAGAT  300

seq1  GTTCCTTTATTGTGGAGAATAGTTTTTGATATCCTGGGTTTTTTGTTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTTATTGTGGAGAATAGTTTTTGATATCCTGGGTTTTTTGTTATT  350

seq1  CCAAATGAATTTGAGAATTTCTCTTTTTACTCTATGAAGAATTGAGTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGAATTTGAGAATTTCTCTTTTTACTCTATGAAGAATTGAGTTGG  400

seq1  AATATTGATGGGGA-TTGTGCTGTATCTGTAGATTGCTTTTGACAAGATG  449
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AATATTGATGGGGATTTGTGCTGTATCTGTAGATTGCTTTTGACAAGATG  450

seq1  GGCATTTTTACTATATATACATATATATATATATATATATATATACATCG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATTTTTACTATATATACATATATATATATATATATATATATACATCG  500

seq1  CCATACATAT-ACACACACACATATCATAATTAAAACT-CCAGTGCTGAA  547
      |||||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  CCATACATATAACACACACACATATCATAATTAAAACTCCCAGTGCTGAA  550

seq1  G-AAATTCAAAGAA-TAAAAAAAATTAGTAAAGATTCAAA-TTTTAAATT  594
      | |||||||||||| ||||||||||||||||||||||||| |||||||||
seq2  GAAAATTCAAAGAATTAAAAAAAATTAGTAAAGATTCAAATTTTTAAATT  600

seq1  ---TCTTTTTTTACCAGAAACATCTTA-TTATCCA-CTAA--TTTCCATA  637
         | |||||||||||||||||||||| ||||||| ||||  || |||||
seq2  TTCTTTTTTTTTACCAGAAACATCTTATTTATCCACCTAAATTTCCCATA  650

seq1  ATCAAACCCCAGGGGT--ATTCTTTGA--TTTCACAAGCACCAAGGAAAG  683
      ||||||||||||||||   ||||||||  || |||||||| || ||||||
seq2  ATCAAACCCCAGGGGTTATTTCTTTGAATTTCCACAAGCA-CAGGGAAAG  699

seq1  G-AAGGGACAGGGTGCAATGGTA-ACCCCCA--CCCACCCA  720
      | ||||||||||||||||| ||| |||||||   |||||||
seq2  GAAAGGGACAGGGTGCAATTGTATACCCCCAACTCCACCCA  740