BAC Information

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BAC

Clone NameB6Ng01-284C20
Chromosome10 (Build37)
Map Location 92,146,881 - 92,304,644
singlet/doubletdoublet
Overlap geneNedd1, Gm872
Upstream geneLOC100041799, LOC667203, LOC216229, LOC100041814
Downstream gene4930485B16Rik, EG667314, Pctk2, Elk3, LOC100041854, Lta4h, Hal, Amdhd1, Ccdc38, Snrpf, LOC100041873, Ntn4, LOC667338, LOC100041907, Usp44
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-284C20.bB6Ng01-284C20.g
ACCGA082946GA082947
length1,168453
definitionB6Ng01-284C20.b B6Ng01-284C20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,303,467 - 92,304,644)(92,146,881 - 92,147,339)
sequence
gaattcttagtgcaaaaagattgtaaacacacgtaaattttctccaaaca
gagtttccaaaagatcataaagaatgcggtgacagttgtgtgattcctgg
tacaaaagtttgattaatggttattggtggctggtggcttcagacagagc
cagggaaatggttttaaggaagggttatttacaaggtactctgaaagcat
gggggcagtattttgttttcttaggtgggtggtaaatgttagacagctag
acagccaatcagagaagcgtcattccctggtaacaataagtacatggaaa
ctcaatttattagtcaagaaaacatgcctagaccattacccacggaagac
ccctctcatctcaatgtctttcatcccccagagacaattgctgttccctg
atcaaatatcaaatgtaaatgtttgtacacagccctagaaggaattgtac
tgcatgcccttgaatttacacagcggcaccacatgattcttctctcatgt
cgaatctgcaccttagctcatggctcatttgcagcatctcttagcgcact
cacggtgcgcagacaagcacgaggcacagagattgtcaagctctctcact
agcaagcatcgctactgagacaaggatggtgcctccacactacacttcct
cccttatggaggaatctactttattctgctttccttcaacaatgtcaaag
aaacacactgtttcctgtttcatagtttcctttttctattgcaaaactac
cgggcacatcgttcgttgcacaagactccatgcgcacacatggatatctt
cattttccattttgttagatcctgctgtatcctcttgtgggctgttgcac
ctctgagtaagtgtgtgcatgctctgttttctttaagatgtcactaatgc
tcattacagtgagataccactgtgtcattgccccaagggatggaagagat
tattcatcttgaatctgtattgccctgattgttagcggtgctaaattttt
catcgtttagggctaccggtgggttgttgacgtactttgcacactctcta
tgactgcttgtgaattggcctattgtcttttagatgtttttgtacaagtt
catatatgtgcctacataaagagctaagctgtggcctatagctacggtca
gaagccaccttgcttagc
attagttttcatacttgtctttgtgtgtgtatgtgcgcatgcgcctttgt
acaagatggagaaatacttgtataatagataattcctttcacttccaata
ttgatcatttatgtctgattttctcagttgtgtggctggtggcttatcag
ttttattgctaagaactactgtacgcttcactattttcaccaattgattt
tgttttccactgcatgcattccttttttttttttttttttttttaacatt
ggggaatattcttctacttgcaggtaaaaactgaggtcactaattttagg
ggtctttccttttctaagataagctttgatgctatacattcatctacaaa
taatacactgtgtggtttcctcaattttaaaggatttaattatttaagag
gacgagaacatggagatgacagaggaggaggagaagggagagggagggga
gga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_92303467_92304644
seq2: B6Ng01-284C20.b_46_1213 (reverse)

seq1  GCTAAGCAA-GTG--CTCTGCCCGTGAGCTATA-GCCACAGCTCTGCTTC  46
      ||||||||| |||   |||| |||| ||||||| |||||||||  |||  
seq2  GCTAAGCAAGGTGGCTTCTGACCGT-AGCTATAGGCCACAGCTTAGCT--  47

seq1  CTTTTATGTAG---CACATATGAAACCTTTGTACAAAACAATTTTTAAAA  93
        |||||||||   || |||||||    ||||||||||  || |   |||
seq2  -CTTTATGTAGGCACATATATGAA---CTTGTACAAAAACATCT---AAA  90

seq1  AGACAAATAGCCCAATTTCAACAAGCAGTTCATAGGAGAGGTGTGCAAAG  143
      |||| ||||| ||||||   |||||||| ||||| |||| ||||||||||
seq2  AGAC-AATAGGCCAATT--CACAAGCAG-TCATA-GAGA-GTGTGCAAAG  134

seq1  TACGTCAACAACCAACCGGTAGGCCTAAACGATGAAAAATTTTAGCACCG  193
      ||||||||||||| |||||||| |||||||||||||||| ||||||||||
seq2  TACGTCAACAACCCACCGGTAGCCCTAAACGATGAAAAA-TTTAGCACCG  183

seq1  CTAACAATCAGGGCAATACAGATTCAAGATGAAATATTCTCTTCCATCCC  243
      ||||||||||||||||||||||||||||||| |||| |||||||||||||
seq2  CTAACAATCAGGGCAATACAGATTCAAGATG-AATAATCTCTTCCATCCC  232

seq1  TT-GGGCAATGACACAGTGGTATCTCACTGTAATGAGCATTAGTGACATC  292
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGCAATGACACAGTGGTATCTCACTGTAATGAGCATTAGTGACATC  282

seq1  TTAAAGAAAACAGAGCATGCACACACTTACTCAGAGGTGCAACAGCCCAC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGAAAACAGAGCATGCACACACTTACTCAGAGGTGCAACAGCCCAC  332

seq1  AAGAGGATACAGCAGGATCTAACAAAATGGAAAATGAAGATATCCATGTG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGATACAGCAGGATCTAACAAAATGGAAAATGAAGATATCCATGTG  382

seq1  TGCGCATGGAGTCTTGTGCAACGAACGATGTGCCCGGTAGTTTTGCAATA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCATGGAGTCTTGTGCAACGAACGATGTGCCCGGTAGTTTTGCAATA  432

seq1  GAAAAAGGAAACTATGAAACAGGAAACAGTGTGTTTCTTTGACATTGTTG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAGGAAACTATGAAACAGGAAACAGTGTGTTTCTTTGACATTGTTG  482

seq1  AAGGAAAGCAGAATAAAGTAGATTCCTCCATAAGGGAGGAAGTGTAGTGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGCAGAATAAAGTAGATTCCTCCATAAGGGAGGAAGTGTAGTGT  532

seq1  GGAGGCACCATCCTTGTCTCAGTAGCGATGCTTGCTAGTGAGAGAGCTTG  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCACCATCCTTGTCTCAGTAGCGATGCTTGCTAGTGAGAGAGCTTG  582

seq1  ACAATCTCTGTGCCTCGTGCTTGTCTGCGCACCGTGAGTGCGCTAAGAGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCTCTGTGCCTCGTGCTTGTCTGCGCACCGTGAGTGCGCTAAGAGA  632

seq1  TGCTGCAAATGAGCCATGAGCTAAGGTGCAGATTCGACATGAGAGAAGAA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAAATGAGCCATGAGCTAAGGTGCAGATTCGACATGAGAGAAGAA  682

seq1  TCATGTGGTGCCGCTGTGTAAATTCAAGGGCATGCAGTACAATTCCTTCT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTGGTGCCGCTGTGTAAATTCAAGGGCATGCAGTACAATTCCTTCT  732

seq1  AGGGCTGTGTACAAACATTTACATTTGATATTTGATCAGGGAACAGCAAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGTGTACAAACATTTACATTTGATATTTGATCAGGGAACAGCAAT  782

seq1  TGTCTCTGGGGGATGAAAGACATTGAGATGAGAGGGGTCTTCCGTGGGTA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGGGGGATGAAAGACATTGAGATGAGAGGGGTCTTCCGTGGGTA  832

seq1  ATGGTCTAGGCATGTTTTCTTGACTAATAAATTGAGTTTCCATGTACTTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTCTAGGCATGTTTTCTTGACTAATAAATTGAGTTTCCATGTACTTA  882

seq1  TTGTTACCAGGGAATGACGCTTCTCTGATTGGCTGTCTAGCTGTCTAACA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTACCAGGGAATGACGCTTCTCTGATTGGCTGTCTAGCTGTCTAACA  932

seq1  TTTACCACCCACCTAAGAAAACAAAATACTGCCCCCATGCTTTCAGAGTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCACCCACCTAAGAAAACAAAATACTGCCCCCATGCTTTCAGAGTA  982

seq1  CCTTGTAAATAACCCTTCCTTAAAACCATTTCCCTGGCTCTGTCTGAAGC  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGTAAATAACCCTTCCTTAAAACCATTTCCCTGGCTCTGTCTGAAGC  1032

seq1  CACCAGCCACCAATAACCATTAATCAAACTTTTGTACCAGGAATCACACA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGCCACCAATAACCATTAATCAAACTTTTGTACCAGGAATCACACA  1082

seq1  ACTGTCACCGCATTCTTTATGATCTTTTGGAAACTCTGTTTGGAGAAAAT  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCACCGCATTCTTTATGATCTTTTGGAAACTCTGTTTGGAGAAAAT  1132

seq1  TTACGTGTGTTTACAATCTTTTTGCACTAAGAATTC  1178
      ||||||||||||||||||||||||||||||||||||
seq2  TTACGTGTGTTTACAATCTTTTTGCACTAAGAATTC  1168

seq1: chr10_92146881_92147339
seq2: B6Ng01-284C20.g_67_525

seq1  GAATTCATTAGTTTTCATACTTGTCTTTGTGTGTGTATGTGCGCATGCGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGTTTTCATACTTGTCTTTGTGTGTGTATGTGCGCATGCGC  50

seq1  CTTTGTACAAGATGGAGAAATACTTGTATAATAGATAATTCCTTTCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTACAAGATGGAGAAATACTTGTATAATAGATAATTCCTTTCACTT  100

seq1  CCAATATTGATCATTTATGTCTGATTTTCTCAGTTGTGTGGCTGGTGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATTGATCATTTATGTCTGATTTTCTCAGTTGTGTGGCTGGTGGCT  150

seq1  TATCAGTTTTATTGCTAAGAACTACTGTACGCTTCACTATTTTCACCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGTTTTATTGCTAAGAACTACTGTACGCTTCACTATTTTCACCAAT  200

seq1  TGATTTTGTTTTCCACTGCATGCATTCCTTTTTTTTTTTTTTTTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTGTTTTCCACTGCATGCATTCCTTTTTTTTTTTTTTTTTTTTTT  250

seq1  AACATTGGGGAATATTCTTCTACTTGCAGGTAAAAACTGAGGTCACTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGGGGAATATTCTTCTACTTGCAGGTAAAAACTGAGGTCACTAAT  300

seq1  TTTAGGGGTCTTTCCTTTTCTAAGATAAGCTTTGATGCTATACATTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGGTCTTTCCTTTTCTAAGATAAGCTTTGATGCTATACATTCATC  350

seq1  TACAAATAATACACTGTGTGGTTTCCTCAATTTTAAAGGATTTAATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATAATACACTGTGTGGTTTCCTCAATTTTAAAGGATTTAATTATT  400

seq1  TAAGAGGACGAGAACATGGAGATGACAGAGGAGGAGGAGAAGGGAGAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGACGAGAACATGGAGATGACAGAGGAGGAGGAGAAGGGAGAGGG  450

seq1  AGGGGAGGA  459
      |||||||||
seq2  AGGGGAGGA  459