BAC Information

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BAC

Clone NameB6Ng01-286F16
Chromosome10 (Build37)
Map Location 103,904,236 - 104,064,844
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667701, EG627488, EG667692, EG667695, LOC100043292
Downstream geneLOC100042383, Tmtc2, EG627573
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-286F16.bB6Ng01-286F16.g
ACCGA084574GA084575
length1,1181,186
definitionB6Ng01-286F16.b B6Ng01-286F16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,904,236 - 103,905,381)(104,063,669 - 104,064,844)
sequence
gaattcacatatctaacacagaaaataaaatcttaagaaaagaaattatg
gtaaaatggagtaaaagttagaaaaaacagcctcatatggtcttttataa
ctcattcatccttttgcctatattctatccttccttacgacttaatgtct
ttatgaagtgggctgtacatcaaatgacaacaggaggtatcactttacta
acaaaagaagccatgaaatttctttctacataatcattgtcatcaatttt
aatatcaatgtaaattggttttaaattaccagattgttaattgaaatagc
ttctaaactcattgattcagaattaaaatatgaatctgaatggtaaggaa
atatgacaaataataacaataataataaagtaaagcaaaaggtttctatt
tctatgttatccaaagaaaagtgggttacctttgtttaatctctaaagac
aggttatgacatagtgtatgcttacagccttgttctttgttgccaatctc
catctgaaaatctggcatcccaaacctgcttttctaaacctttaattcct
ctcatttctttccaggatcctgtgctctgggattctagttcagctcagcc
aatagaaatatgagttcatgtgacatgaccaacacataatctttgtcact
tttccagtattccagcttacattaggcagacaccaagataattttaatct
ctgttggatgaggtcatgattttgtcacatgatttatctctcttgtttga
acaaatatggaggtcaacatgacctctaaaacttctgtggcttcatgaaa
ctgtgtgcagctttaaattcttccattatttatgaaactacttcattata
ttgagccacctagaacagacctttaaaaaaaagagaaactttttaatgca
gtaaacatgagatatgcagataatttactgtagttctcacaagttggaat
ggaatcttcaagtagctcacacaccactgatgtttccagagcaaacatga
gccagtgacagcagcatgtgtggtcagctactctctgtgtcgctttggtt
tcttatagaacaaaatcatagggaatgattccaattattttgatatccac
aacattgtgtacattaac

gaattccattgttattatgttgctctatgatgctaagaaacagaaatctt
gcattctgtcaaaagagttagtgtctcttgtttttcttttcttcttgtgt
ttatggctttaattaattacatgctcagatttgcagagtttatatcccaa
gtccaaatatttcagatgaactcctggctaccatagtcatctacattatt
tattaaactacaactctggaaggctattgtgcaactggctataaccaact
aatataccattataaataatgactgggtattgctggaataaggataactg
tatcatatactctatttatctctaatgtaaaagtttaaaatgtaactata
aattctttctttagttataatttactaatgtgccaaatatttaaagaatt
attgctgacactttcctgacactgtatagcaaaccacaaagacaacaaaa
attagaagaaaaacattgtcaataatgtaagaacaatcaaaacgcaagaa
aaccaatagaattaaaagcatataaataaaaaatgagaacaaaaggcaga
gatgaaaaattaaaaagaaaacatataagcatcattgctgctatgtctct
accctggttgcttgactctgttgatggtgatggctgttagagctgacccc
ttccagttctctgtggaaagctagcagggtccataatgagcatctcttac
tgatccctctcatcctttagggcgaagagtatggatttgctttgaagaca
cagacaatattccctgaatgaacaggaatcactagaatccttgaggcctt
gtggcaaaatgaatcatgtgttttagattttctccattgtaccattgcta
ccctttcaaagagaactggagggagccaactctaacagtcattcccatca
gcaaagtgttgactgtgaaaaactaatcccaaaatgattccctagtgatg
cttctaatactcattgattgctgctattcagtcatcatcaagaagaagaa
cttcttctctgggcagcagaatgggagttgggtgaaagaagtctcaaaaa
gaacaacaacatgggaacagaagggggagtctaatattgagtttcattgg
gtctcttctgagaaattggacccctaaagaaagggtaagaaacggatagg
actagaggaatagagagacaccagaagaaaatatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_103904236_103905381
seq2: B6Ng01-286F16.b_47_1164

seq1  GAATTCACATATCTAACACAGAAAATAAAATCTTAAGAAAAGAAATTATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATATCTAACACAGAAAATAAAATCTTAAGAAAAGAAATTATG  50

seq1  GTAAAATGGAGTAAAAGTTAGAAAAAACAGCCTCATATGGTCTTTTATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAATGGAGTAAAAGTTAGAAAAAACAGCCTCATATGGTCTTTTATAA  100

seq1  CTCATTCATCCTTTTGCCTATATTCTATCCTTCCTTACGACTTAATGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCATCCTTTTGCCTATATTCTATCCTTCCTTACGACTTAATGTCT  150

seq1  TTATGAAGTGGGCTGTACATCAAATGACAACAGGAGGTATCACTTTACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGAAGTGGGCTGTACATCAAATGACAACAGGAGGTATCACTTTACTA  200

seq1  ACAAAAGAAGCCATGAAATTTCTTTCTACATAATCATTGTCATCAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAGAAGCCATGAAATTTCTTTCTACATAATCATTGTCATCAATTTT  250

seq1  AATATCAATGTAAATTGGTTTTAAATTACCAGATTGTTAATTGAAATAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATCAATGTAAATTGGTTTTAAATTACCAGATTGTTAATTGAAATAGC  300

seq1  TTCTAAACTCATTGATTCAGAATTAAAATATGAATCTGAATGGTAAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAACTCATTGATTCAGAATTAAAATATGAATCTGAATGGTAAGGAA  350

seq1  ATATGACAAATAATAACAATAATAATAAAGTAAAGCAAAAGGTTTCTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGACAAATAATAACAATAATAATAAAGTAAAGCAAAAGGTTTCTATT  400

seq1  TCTATGTTATCCAAAGAAAAGTGGGTTACCTTTGTTTAATCTCTAAAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTTATCCAAAGAAAAGTGGGTTACCTTTGTTTAATCTCTAAAGAC  450

seq1  AGGTTATGACATAGTGTATGCTTACAGCCTTGTTCTTTGTTGCCAATCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTATGACATAGTGTATGCTTACAGCCTTGTTCTTTGTTGCCAATCTC  500

seq1  CATCTGAAAATCTGGCATCCCAAACCTGCTTTTCTAAACCTTTAATTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAAAATCTGGCATCCCAAACCTGCTTTTCTAAACCTTTAATTCCT  550

seq1  CTCATTTCTTTCCAGGATCCTGTGCTCTGGGATTCTAGTTCAGCTCAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTTCTTTCCAGGATCCTGTGCTCTGGGATTCTAGTTCAGCTCAGCC  600

seq1  AATAGAAATATGAGTTCATGTGACATGACCAACACATAATCTTTGTCACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAATATGAGTTCATGTGACATGACCAACACATAATCTTTGTCACT  650

seq1  TTTCCAGTATTCCAGCTTACATTAGGCAGACACCAAGATAATTTTAATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGTATTCCAGCTTACATTAGGCAGACACCAAGATAATTTTAATCT  700

seq1  CTGTTGGATGAGGTCATGATTTTGTCACATGATTTATCTCTCTTGTTTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGATGAGGTCATGATTTTGTCACATGATTTATCTCTCTTGTTTGA  750

seq1  ACAAATATGGAGGTCAACATGACCTCTAAAACTTCTGTGGCTTCATGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATGGAGGTCAACATGACCTCTAAAACTTCTGTGGCTTCATGAAA  800

seq1  CTGTGTGCAGCTTTAAATTCTTCCATTATTTATGAAACTACTTCATTATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGCAGCTTTAAATTCTTCCATTATTTATGAAACTACTTCATTATA  850

seq1  TTGAGCCACCTAGAACAGACCTTTAAAAAAAAGAGAAACTTTTTTAATGC  900
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TTGAGCCACCTAGAACAGACCTTTAAAAAAAAGAGAAAC-TTTTTAATGC  899

seq1  AGTAAACATGAGATATGCAGATAATTTACTGTAGTTCTCACAAGTTGGAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTAAACATGAGATATGCAGATAATTTACTGTAGTTCTCACAAGTTGGAA  949

seq1  TGGAATCTTCAAGTAGGCTCACACACCACTGATGTTTCCAGAAGCAAACC  1000
      ||||||||||||||| ||||||||||||||||||||||||| |||||| |
seq2  TGGAATCTTCAAGTA-GCTCACACACCACTGATGTTTCCAG-AGCAAA-C  996

seq1  ATGAAGCCAGTGACAGGCAGCATGTTGTTGGGTCAGCCTTACTCTCTGTG  1050
      ||| ||||||||||| |||||||| |||  |||||||  |||||||||||
seq2  ATG-AGCCAGTGACA-GCAGCATG-TGT--GGTCAGC--TACTCTCTGTG  1039

seq1  TCGCTTTTGGTTTTCTTATAGGAAACAAAAATTCATAGGGAAATTTGAAT  1100
      |||||||  | ||||||||||  |||||||  ||||||||||   |||  
seq2  TCGCTTT--GGTTTCTTATAG--AACAAAA--TCATAGGGAA---TGA--  1078

seq1  TTTCATATATTTTTGGATATTCCACAACATTGTGTTTAACATTAAC  1146
      || ||  ||||||  |||| |||||||||||||||   ||||||||
seq2  TTCCAATTATTTT--GATA-TCCACAACATTGTGT---ACATTAAC  1118


seq1: chr10_104063669_104064844
seq2: B6Ng01-286F16.g_69_1254 (reverse)

seq1  CCATA--TTCTTCTGGTGTC-CTCTATTCCCTCAGATTCTCTATCCTTTT  47
      |||||  ||||||||||||| |||||||||   ||  || |||||| |||
seq2  CCATATTTTCTTCTGGTGTCTCTCTATTCCTCTAG--TC-CTATCCGTTT  47

seq1  CCCTCCCCTTCTTTAGGGGGTCCCATATCTCCAAGAAGAGGACCCAATGG  97
      |   ||| ||||||| ||||||| || ||||  |||||| |||||||| |
seq2  CTTACCCTTTCTTTA-GGGGTCCAATTTCTC--AGAAGA-GACCCAAT-G  92

seq1  AAACTTCCAATA-TAGACTCCC---TCTGTTTCCATGT-----GTGTCTG  138
      |||||  ||||| |||||||||   |||||| ||||||      | | | 
seq2  AAACT--CAATATTAGACTCCCCCTTCTGTTCCCATGTTGTTGTTCTTTT  140

seq1  TGAGACT--CTTCACCC-ACTCCCA-TCTGCTG-CCAGAGGAGGAAG---  180
      |||||||   ||||||| ||||||| ||||||| ||||| || ||||   
seq2  TGAGACTTCTTTCACCCAACTCCCATTCTGCTGCCCAGA-GAAGAAGTTC  189

seq1  -TCTCTCTGATGATGACTGAATAAGGCAGCAATCAATGAGTA-TAGAAGC  228
       |||   ||||||||||||||||  ||||||||||||||||| |||||||
seq2  TTCTTCTTGATGATGACTGAATA--GCAGCAATCAATGAGTATTAGAAGC  237

seq1  ATCACTA-GGAATCATTTTGGGGATTAGTTTTTCACAGTC-ACACTTTGC  276
      ||||||| ||||||||||| |||||||||||||||||||| |||||||||
seq2  ATCACTAGGGAATCATTTT-GGGATTAGTTTTTCACAGTCAACACTTTGC  286

seq1  TGATGGGAATGACTGTTAGAGTTGGCTCCCTCCAGTTCTCTTTGGAAGGG  326
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TGATGGGAATGACTGTTAGAGTTGGCTCCCTCCAGTTCTCTTTGAAAGGG  336

seq1  TAGCAATGGTACAATGGAGAAAATCTAAAACACATGATTCATTTTGCCAC  376
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATGGTACAATGGAGAAAATCTAAAACACATGATTCATTTTGCCAC  386

seq1  AAGGCCTCAAGGATTCTAGTGATTCCTGTTCATTCAGGGAATATTGTCTG  426
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCTCAAGGATTCTAGTGATTCCTGTTCATTCAGGGAATATTGTCTG  436

seq1  TGTCTTCAAAGCAAATCCATACTCTTCGCCCTAAAGGATGAGAGGGATCA  476
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCAAAGCAAATCCATACTCTTCGCCCTAAAGGATGAGAGGGATCA  486

seq1  GTAAGAGATGCTCATTATGGACCCTGCTAGCTTTCCACAGAGAACTGGAA  526
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGAGATGCTCATTATGGACCCTGCTAGCTTTCCACAGAGAACTGGAA  536

seq1  GGGGTCAGCTCTAACAGCCATCACCATCAACAGAGTCAAGCAACCAGGGT  576
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTCAGCTCTAACAGCCATCACCATCAACAGAGTCAAGCAACCAGGGT  586

seq1  AGAGACATAGCAGCAATGATGCTTATATGTTTTCTTTTTAATTTTTCATC  626
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATAGCAGCAATGATGCTTATATGTTTTCTTTTTAATTTTTCATC  636

seq1  TCTGCCTTTTGTTCTCATTTTTTATTTATATGCTTTTAATTCTATTGGTT  676
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTTTGTTCTCATTTTTTATTTATATGCTTTTAATTCTATTGGTT  686

seq1  TTCTTGCGTTTTGATTGTTCTTACATTATTGACAATGTTTTTCTTCTAAT  726
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGCGTTTTGATTGTTCTTACATTATTGACAATGTTTTTCTTCTAAT  736

seq1  TTTTGTTGTCTTTGTGGTTTGCTATACAGTGTCAGGAAAGTGTCAGCAAT  776
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTGTCTTTGTGGTTTGCTATACAGTGTCAGGAAAGTGTCAGCAAT  786

seq1  AATTCTTTAAATATTTGGCACATTAGTAAATTATAACTAAAGAAAGAATT  826
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTTAAATATTTGGCACATTAGTAAATTATAACTAAAGAAAGAATT  836

seq1  TATAGTTACATTTTAAACTTTTACATTAGAGATAAATAGAGTATATGATA  876
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTACATTTTAAACTTTTACATTAGAGATAAATAGAGTATATGATA  886

seq1  CAGTTATCCTTATTCCAGCAATACCCAGTCATTATTTATAATGGTATATT  926
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATCCTTATTCCAGCAATACCCAGTCATTATTTATAATGGTATATT  936

seq1  AGTTGGTTATAGCCAGTTGCACAATAGCCTTCCAGAGTTGTAGTTTAATA  976
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGGTTATAGCCAGTTGCACAATAGCCTTCCAGAGTTGTAGTTTAATA  986

seq1  AATAATGTAGATGACTATGGTAGCCAGGAGTTCATCTGAAATATTTGGAC  1026
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGTAGATGACTATGGTAGCCAGGAGTTCATCTGAAATATTTGGAC  1036

seq1  TTGGGATATAAACTCTGCAAATCTGAGCATGTAATTAATTAAAGCCATAA  1076
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATATAAACTCTGCAAATCTGAGCATGTAATTAATTAAAGCCATAA  1086

seq1  ACACAAGAAGAAAAGAAAAACAAGAGACACTAACTCTTTTGACAGAATGC  1126
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGAAGAAAAGAAAAACAAGAGACACTAACTCTTTTGACAGAATGC  1136

seq1  AAGATTTCTGTTTCTTAGCATCATAGAGCAACATAATAACAATGGAATTC  1176
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCTGTTTCTTAGCATCATAGAGCAACATAATAACAATGGAATTC  1186


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