BAC Information

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BAC

Clone NameB6Ng01-288C10
Chromosome10 (Build37)
Map Location 85,338,863 - 85,469,900
singlet/doubletdoublet
Overlap genePwp1, Prdm4, Ascl4, D10Wsu52e, Bpil2
Upstream geneRfx4, Ric8b, Fhl4, AI597468, Mterfd3, Cry1, EG666974, Btbd11, EG626858, LOC626878, LOC669723, LOC626940
Downstream geneFbxo7, Syn3, Timp3, EG627035, LOC672902, LOC100041419, EG382395, Hsp90b1, Nt5dc3, Fabp3-ps1, C630002B14Rik, Stab2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288C10.bB6Ng01-288C10.g
ACCGA085889GA085890
length1,0551,127
definitionB6Ng01-288C10.b B6Ng01-288C10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,468,847 - 85,469,900)(85,338,863 - 85,340,005)
sequence
gaattcagcaatgacagctcatccaaactgttaacatcccaaacaagaag
taaggcttgtgccagtattaaccacttggatgccattgaaataagtctac
accactgttgctattggcatctgtcatttaaaccaacaagaaaaataggt
tggcattaatccatggcgcagtattaattgaacaagcaaacaattgctta
cttatacattccaaacatgggtgacataacactgaatacaatgtgtttct
tttccttggagagtatgtttgtctcatcaagatacttctgcatgactact
ctgagccaggcattgtactaggctctggagctacagaaacaaaacgttcc
cttagtgaagtaaggacagagaaataaagatgcgatcacaattcagagcc
ttgagcacctcatactaactctcagaacaaaggcatatatgattcaattc
atagcctcgaggagacaatgactcattgtccagtcaatccaccattcagt
gtttgcccattgcctaccgtgtgacagttgctgtcccaagtgctgacaca
atgaagtcattccttgcaacaccaaaaaatgtccagaaaggaggaaaccc
caataatgaatatttaaataatgattaggttataacttctttgtctaaga
atcacagctccatatgaagtctcgtaactgatggaattgaagaaaaaaat
ataacaggaaaaggtatctaaatacacaatcaccaaaaattaattcaaaa
actcataatgaacctaaagtgtttctggggatgtatgccagtggtcccct
gtgtgatgtcactgcagctattgctctgtacagatgacatgctcactgca
caggctgccacactatacagcaccaacactggctgctgaaatacctcagc
tcacactaaagactatcttgcagtatgaacttctgtgttcttactgtgca
cacaaagtttcatccttctcattagaaacacaatgggtctattacagaaa
acaaaacttttaaattgcatttgtgtgtgtgtgtgtgtgtgtgtgtgtag
tgctg
gaattcattccagatgtcaaatagaactgacttgtaagtttgtacagctt
tctctaccaaataagagcagcatggttggtgataaaggacacccaagcca
aaaactagaagacttggggaaaaagttttgtcaagatgatttttaatttt
tctattttgatggatggattctgattacagatgctgagaccattggcgag
tctctgttgggtcttacggtctatggcagtaatgaccaggatccatatgt
caccttgaaagacacggtaggtaaatgtttacccacatcagttttcagat
tggtcctaagtgttgaaaatcctcatggaacccccgcctctagccagtga
ctgtctcctcccacttaggaacaatatgagcatgaagatttcttgattaa
gccgactgacaacctcatcgtttgtggccgtgctgaacaagagcagtgca
atctagaggtgcacggtgagtaacggttgcccactgggatgcttttccgt
gtaatgttaaatagtgcggcggacacaagccaggtttacagtgatggctg
tcctaggcatgcgcagtctagaaatgggccccttggggaaggggttcttg
gctttctctgtgtatgagtgttctgcctgaatgtaactgggcattctgtg
tgtgcttggtgcccaaagaaaccagaaccgggtgttagagccttgggact
ggaatctccgacagttgtgagcagctgagggcactgggaattagacccag
gtcccctgcaagagcaacaagtgatcttgtcctgcattgttttgttgttt
gttttttagctacttgagatagtgtccttcatagaacattctgttttctt
ctcttcttctttttttttttttttttgaacagagtttctctgtgggctgt
ctgtctaggaactcattctgtagccctgggctgtccttgaactcactctg
tagcctcaggctggcttgaactcagatcctccttgcctctgcctcccaag
tcctgggataaagcgtggcgcgccattgcctggcagagccacatttttaa
aaaagatattcattttgtatgtttgcctacacgatgtttttgtacagagt
gtacatactcgacctttgctactgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_85468847_85469900
seq2: B6Ng01-288C10.b_50_1104 (reverse)

seq1  CAGCACACACACACACACACACACACACACACACAAATGCAATTAAAAGT  50
      ||||||  |||||||||||||||||||||||||||||||||||| |||  
seq2  CAGCAC-TACACACACACACACACACACACACACAAATGCAATTTAAAAG  49

seq1  TTTTGTTTTCTGTAAATAGA-CCATTGTGTTTCT-ATGAG-AGGATGAAA  97
      ||||||||||||| |||||| ||||||||||||| ||||| |||||||||
seq2  TTTTGTTTTCTGT-AATAGACCCATTGTGTTTCTAATGAGAAGGATGAAA  98

seq1  CTTTGTGTGCACAGTAAGAACACAGAAGTTCATACTGCAAGATAGTCTTT  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTGCACAGTAAGAACACAGAAGTTCATACTGCAAGATAGTCTTT  148

seq1  AGTGTGAGCTGAGGTATTTCAGCAGCCAGTGTTGGTGCTGTATAGTGTGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGAGCTGAGGTATTTCAGCAGCCAGTGTTGGTGCTGTATAGTGTGG  198

seq1  CAGCCTGTGCAGTGAGCATGTCATCTGTACAGAGCAATAGCTGCAGTGAC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGTGCAGTGAGCATGTCATCTGTACAGAGCAATAGCTGCAGTGAC  248

seq1  ATCACACAGGGGACCACTGGCATACATCCCCAGAAACACTTTAGGTTCAT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACACAGGGGACCACTGGCATACATCCCCAGAAACACTTTAGGTTCAT  298

seq1  TATGAGTTTTTGAATTAATTTTTGGTGATTGTGTATTTAGATACCTTTTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGTTTTTGAATTAATTTTTGGTGATTGTGTATTTAGATACCTTTTC  348

seq1  CTGTTATATTTTTTTCTTCAATTCCATCAGTTACGAGACTTCATATGGAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTATATTTTTTTCTTCAATTCCATCAGTTACGAGACTTCATATGGAG  398

seq1  CTGTGATTCTTAGACAAAGAAGTTATAACCTAATCATTATTTAAATATTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGATTCTTAGACAAAGAAGTTATAACCTAATCATTATTTAAATATTC  448

seq1  ATTATTGGGGTTTCCTCCTTTCTGGACATTTTTTGGTGTTGCAAGGAATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTGGGGTTTCCTCCTTTCTGGACATTTTTTGGTGTTGCAAGGAATG  498

seq1  ACTTCATTGTGTCAGCACTTGGGACAGCAACTGTCACACGGTAGGCAATG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTGTGTCAGCACTTGGGACAGCAACTGTCACACGGTAGGCAATG  548

seq1  GGCAAACACTGAATGGTGGATTGACTGGACAATGAGTCATTGTCTCCTCG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAACACTGAATGGTGGATTGACTGGACAATGAGTCATTGTCTCCTCG  598

seq1  AGGCTATGAATTGAATCATATATGCCTTTGTTCTGAGAGTTAGTATGAGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTATGAATTGAATCATATATGCCTTTGTTCTGAGAGTTAGTATGAGG  648

seq1  TGCTCAAGGCTCTGAATTGTGATCGCATCTTTATTTCTCTGTCCTTACTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAAGGCTCTGAATTGTGATCGCATCTTTATTTCTCTGTCCTTACTT  698

seq1  CACTAAGGGAACGTTTTGTTTCTGTAGCTCCAGAGCCTAGTACAATGCCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAAGGGAACGTTTTGTTTCTGTAGCTCCAGAGCCTAGTACAATGCCT  748

seq1  GGCTCAGAGTAGTCATGCAGAAGTATCTTGATGAGACAAACATACTCTCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGAGTAGTCATGCAGAAGTATCTTGATGAGACAAACATACTCTCC  798

seq1  AAGGAAAAGAAACACATTGTATTCAGTGTTATGTCACCCATGTTTGGAAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAGAAACACATTGTATTCAGTGTTATGTCACCCATGTTTGGAAT  848

seq1  GTATAAGTAAGCAATTGTTTGCTTGTTCAATTAATACTGCGCCATGGATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAAGTAAGCAATTGTTTGCTTGTTCAATTAATACTGCGCCATGGATT  898

seq1  AATGCCAACCTATTTTTCTTGTTGGTTTAAATGACAGATGCCAATAGCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAACCTATTTTTCTTGTTGGTTTAAATGACAGATGCCAATAGCAA  948

seq1  CAGTGGTGTAGACTTATTTCAATGGCATCCAAGTGGTTAATACTGGCACA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGTAGACTTATTTCAATGGCATCCAAGTGGTTAATACTGGCACA  998

seq1  AGCCTTACTTCTTGTTTGGGATGTTAACAGTTTGGATGAGCTGTCATTGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTACTTCTTGTTTGGGATGTTAACAGTTTGGATGAGCTGTCATTGC  1048

seq1  TGAATTC  1054
      |||||||
seq2  TGAATTC  1055

seq1: chr10_85338863_85340005
seq2: B6Ng01-288C10.g_70_1196

seq1  GAATTCATTCCAGATGTCAAATAGAACTGACTTGTAAGTTTGTACAGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCCAGATGTCAAATAGAACTGACTTGTAAGTTTGTACAGCTT  50

seq1  TCTCTACCAAATAAGAGCAGCATGGTTGGTGATAAAGGACACCCAAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTACCAAATAAGAGCAGCATGGTTGGTGATAAAGGACACCCAAGCCA  100

seq1  AAAACTAGAAGACTTGGGGAAAAAGTTTTGTCAAGATGATTTTTAATTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTAGAAGACTTGGGGAAAAAGTTTTGTCAAGATGATTTTTAATTTT  150

seq1  TCTATTTTGATGGATGGATTCTGATTACAGATGCTGAGACCATTGGCGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTGATGGATGGATTCTGATTACAGATGCTGAGACCATTGGCGAG  200

seq1  TCTCTGTTGGGTCTTACGGTCTATGGCAGTAATGACCAGGATCCATATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTTGGGTCTTACGGTCTATGGCAGTAATGACCAGGATCCATATGT  250

seq1  CACCTTGAAAGACACGGTAGGTAAATGTTTACCCACATCAGTTTTCAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGAAAGACACGGTAGGTAAATGTTTACCCACATCAGTTTTCAGAT  300

seq1  TGGTCCTAAGTGTTGAAAATCCTCATGGAACCCCCGCCTCTAGCCAGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTAAGTGTTGAAAATCCTCATGGAACCCCCGCCTCTAGCCAGTGA  350

seq1  CTGTCTCCTCCCACTTAGGAACAATATGAGCATGAAGATTTCTTGATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTCCTCCCACTTAGGAACAATATGAGCATGAAGATTTCTTGATTAA  400

seq1  GCCGACTGACAACCTCATCGTTTGTGGCCGTGCTGAACAAGAGCAGTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGACTGACAACCTCATCGTTTGTGGCCGTGCTGAACAAGAGCAGTGCA  450

seq1  ATCTAGAGGTGCACGGTGAGTAACGGTTGCCCACTGGGATGCTTTTCCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAGGTGCACGGTGAGTAACGGTTGCCCACTGGGATGCTTTTCCGT  500

seq1  GTAATGTTAAATAGTGCGGCGGACACAAGCCAGGTTTACAGTGATGGCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTTAAATAGTGCGGCGGACACAAGCCAGGTTTACAGTGATGGCTG  550

seq1  TCCTAGGCATGCGCAGTCTAGAAATGGGCCCCTTGGGGAAGGGGTTCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGCATGCGCAGTCTAGAAATGGGCCCCTTGGGGAAGGGGTTCTTG  600

seq1  GCTTTCTCTGTGTATGAGTGTTCTGCCTGAATGTAACTGGGCATTCTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTCTGTGTATGAGTGTTCTGCCTGAATGTAACTGGGCATTCTGTG  650

seq1  TGTGCTTGGTGCCCAAAGAAACCAGAACCGGGTGTTAGAGCCTTGGGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGGTGCCCAAAGAAACCAGAACCGGGTGTTAGAGCCTTGGGACT  700

seq1  GGAATCTCCGACAGTTGTGAGCAGCTGAGGGCACTGGGAATTAGACCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCTCCGACAGTTGTGAGCAGCTGAGGGCACTGGGAATTAGACCCAG  750

seq1  GTCCCCTGCAAGAGCAACAAGTGATCTTGTCCTGCATTGTTTTGTTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTGCAAGAGCAACAAGTGATCTTGTCCTGCATTGTTTTGTTGTTT  800

seq1  GTTTTTTAGCTACTTGAGATAGTGTCCTTCATAGAACATTCTGTTTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTAGCTACTTGAGATAGTGTCCTTCATAGAACATTCTGTTTTCTT  850

seq1  CTCTTCTTCTTTTTTTTTTTTTTTTTTTTTTTGACAGAGTTTCTCTGT-G  899
      |||||||||     |||||||||||||||||  ||||||||||||||| |
seq2  CTCTTCTTC-----TTTTTTTTTTTTTTTTTGAACAGAGTTTCTCTGTGG  895

seq1  GCTGTCTGTCTAGGAACTCATTCTGTAGCCCT-GGCTGTCCTGGAACTCA  948
      |||||||||||||||||||||||||||||||| ||||||||| |||||||
seq2  GCTGTCTGTCTAGGAACTCATTCTGTAGCCCTGGGCTGTCCTTGAACTCA  945

seq1  CTCTGTAG-CTCAGGCTGGCTTGAACTCAGATCCTCC-TGCCTCTGCCTC  996
      |||||||| |||||||||||||||||||||||||||| ||||||||||||
seq2  CTCTGTAGCCTCAGGCTGGCTTGAACTCAGATCCTCCTTGCCTCTGCCTC  995

seq1  CCAAGTCCTGGGATTAAAGGCGTGCGCCGCCATTGCCCGGCAGAGCCACC  1046
      ||||||||||||||  || |||||   |||||||||| ||||||||||| 
seq2  CCAAGTCCTGGGAT--AAAGCGTGGCGCGCCATTGCCTGGCAGAGCCAC-  1042

seq1  ATTTTTTTAAAAAGATTTATTCATTTTGTATGTTTGCCTACACGTATGTT  1096
        ||||| |||||||  ||||||||||||||||||||||||||| |||||
seq2  -ATTTTTAAAAAAGA--TATTCATTTTGTATGTTTGCCTACACG-ATGTT  1088

seq1  TTTGTACCAGGAGTGTTACTACTTCAGAACTCTTTTTGCTACTGTTA  1143
      |||||||   ||||||   ||||   || |    |||||||||||||
seq2  TTTGTAC--AGAGTGTACATACT--CGACC----TTTGCTACTGTTA  1127