BAC Information

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BAC

Clone NameB6Ng01-288F01
Chromosome10 (Build37)
Map Location 101,240,169 - 101,348,019
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneMgat4c, LOC667652, Nts, Pamci, LOC382413
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-288F01.bB6Ng01-288F01.g
ACCGA086009GA086010
length1,0641,017
definitionB6Ng01-288F01.b B6Ng01-288F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,240,169 - 101,241,222)(101,347,005 - 101,348,019)
sequence
gaattccttagtatgttgagagtctatctaatacaagatccagctaaccc
agtcttgggtgtatacataaaagatatttcatcctatctcaaggacactt
gctcaactatgttcactggggttttattcatagtagccagaaaccagaaa
caacctagacgtccctcaagtaatgaaagcatttctaatttttaggagta
tatttctgatatgattagaaatgaggtagatagatttactctaactttct
tatgacatccattcatgaaaattgatttttttggttttcactgttaaata
ttattcatattgttcatagtgtgaatgatttcactcagtggtttacatta
aaaagttcctgcactacgcctgtacccatgtatgtcctatcaagtctctt
cccactttggaaataggatccacaggcaggcaggtatgaagacatgtctg
attgttttaaaataaagatctgaaggaaatagttatacatggtcagaccc
tcattaatatggataaattgtttgtatatataccttaagatgggtagatg
gctcagagttttgaataaagaataactgaaaaagggagttgaaataaata
agtgtcagacccaaaaggtttctaactgaagcctgtaacaccaattttaa
aatgaaaaacaatcaccatctgaaggctcttattacaggagtactgtggt
ctatctaagtgtttccggtattatctaagtgtttccggtatcatcttcac
ttctccttcagaggtacagtaaaagatgggagagaaggaaaagtaataag
tagagaaatgggcagaacgctaccctaagaggtaagcaggacatgacact
gggctaacacttattagcaaggaaaaaacaaaaagtttatctgtcaagga
gaattatttaatgaatgatatgttacaagagaagataaaatataacatac
acttccggaaagagagagagactgtagatcctgagactcagagcgaatta
gtaggcttggatttttaaggcaagcagtttagtaatggaatagaattttg
tctttcccagtgtg

gaattcagagaaagagaaagtcttccagtacataatgataagaggaagca
tgcttttatatttcaccatattttatattttaatcatcttattttattgt
ctgaaaagtgtgaccattaatctaacacagaagactgagacgtaattaat
taggaataaccagagatctcaaagttattatagatgcatcagaatcacaa
aagacccactttccacaagcaaggagtcatatttcagagttagagtacat
ttacactgttatttcacagctgtcaaaaagcatagtcttgaaatatgact
ttcttgagacacacactcaaatccattttcaacattttaactgagaatgc
ttcagagacccaagcatactatccctagaagaatctaaatagcaagaagg
aaaagagacatcatatttttatatctaaatttcagtagaatttcaagtat
tctgtaatcaaggtatactgtatatcacgtgactttatatatgtatcaaa
tatcattaaaggtaaatttagaaaattataactaataatttttaatttaa
gaaaatatcaaggcttgatgaaaagaagcaaaaaatgaattgtagcaagg
attaacttagaaatatttatgtacctcacttatttgaaaataaagtgaga
gataaattgaaaaacagcatcaaaagtgaggcaagtgggaaagtggaaat
aggatatgaattaatgggaatttagcaaacaggatgctaactcttacagc
ctgtaaaatgaagaatgtgagctatatttttttactactcctgaataggc
aaaaaaaaaaaaaaaaaaaggaagaatctgattagatcacagatttgcag
ggcctggtgatgtatgatacagtgtggtgtgatacaaattatttttaatc
ccagtactttaattagttaaaggaggaagatcgggaaatttaaatatagc
atccactatctaggagacctggaatgctagcctgcactacacgaggctct
atcttcaattaaagaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_101240169_101241222
seq2: B6Ng01-288F01.b_48_1111

seq1  GAATTCCTTAGTATGTTGAGAGTCTATCTAATACAAGATCCAGCTAACCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGTATGTTGAGAGTCTATCTAATACAAGATCCAGCTAACCC  50

seq1  AGTCTTGGGTGTATACATAAAAGATATTTCATCCTATCTCAAGGACACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGGGTGTATACATAAAAGATATTTCATCCTATCTCAAGGACACTT  100

seq1  GCTCAACTATGTTCACTGGGGTTTTATTCATAGTAGCCAGAAACCAGAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAACTATGTTCACTGGGGTTTTATTCATAGTAGCCAGAAACCAGAAA  150

seq1  CAACCTAGACGTCCCTCAAGTAATGAAAGCATTTCTAATTTTTAGGAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTAGACGTCCCTCAAGTAATGAAAGCATTTCTAATTTTTAGGAGTA  200

seq1  TATTTCTGATATGATTAGAAATGAGGTAGATAGATTTACTCTAACTTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTGATATGATTAGAAATGAGGTAGATAGATTTACTCTAACTTTCT  250

seq1  TATGACATCCATTCATGAAAATTGATTTTTTTGGTTTTCACTGTTAAATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACATCCATTCATGAAAATTGATTTTTTTGGTTTTCACTGTTAAATA  300

seq1  TTATTCATATTGTTCATAGTGTGAATGATTTCACTCAGTGGTTTACATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCATATTGTTCATAGTGTGAATGATTTCACTCAGTGGTTTACATTA  350

seq1  AAAAGTTCCTGCACTACGCCTGTACCCATGTATGTCCTATCAAGTCTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGTTCCTGCACTACGCCTGTACCCATGTATGTCCTATCAAGTCTCTT  400

seq1  CCCACTTTGGAAATAGGATCCACAGGCAGGCAGGTATGAAGACATGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACTTTGGAAATAGGATCCACAGGCAGGCAGGTATGAAGACATGTCTG  450

seq1  ATTGTTTTAAAATAAAGATCTGAAGGAAATAGTTATACATGGTCAGACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTAAAATAAAGATCTGAAGGAAATAGTTATACATGGTCAGACCC  500

seq1  TCATTAATATGGATAAATTGTTTGTATATATACCTTAAGATGGGTAGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTAATATGGATAAATTGTTTGTATATATACCTTAAGATGGGTAGATG  550

seq1  GCTCAGAGTTTTGAATAAAGAATAACTGAAAAAGGGAGTTGAAATAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGAGTTTTGAATAAAGAATAACTGAAAAAGGGAGTTGAAATAAATA  600

seq1  AGTGTCAGACCCAAAAGGTTTCTAACTGAAGCCTGTAACACCAATTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCAGACCCAAAAGGTTTCTAACTGAAGCCTGTAACACCAATTTTAA  650

seq1  AATGAAAAACAATCACCATCTGAAGGCTCTTATTACAGGAGTACTGTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAAACAATCACCATCTGAAGGCTCTTATTACAGGAGTACTGTGGT  700

seq1  CTATCTAAGTGTTTCCGGTATTATCTAAGTGTTTCCGGTATCATCTTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTAAGTGTTTCCGGTATTATCTAAGTGTTTCCGGTATCATCTTCAC  750

seq1  TTCTCCTTCAGAGGTACAGTAAAAGAT-GGAGAGAAGGAAAAGTAATAAG  799
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTCTCCTTCAGAGGTACAGTAAAAGATGGGAGAGAAGGAAAAGTAATAAG  800

seq1  TAGAGAAATGGGCAGAACGCTACCCTAAGAGGTAAGCAGGACATGACACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAAATGGGCAGAACGCTACCCTAAGAGGTAAGCAGGACATGACACT  850

seq1  -GGCTAACACTTATAAGCAAGGAAAAAAC-AAAAGTTTATCTGTCAAGGA  897
       ||||||||||||| |||||||||||||| ||||||||||||||||||||
seq2  GGGCTAACACTTATTAGCAAGGAAAAAACAAAAAGTTTATCTGTCAAGGA  900

seq1  GAATTA-TTAATGAATGATATGTTACAAGAGAAGATAAAATATAAACATA  946
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  GAATTATTTAATGAATGATATGTTACAAGAGAAGATAAAATAT-AACATA  949

seq1  CACATACAGAAAGAGAGAGAGACAG-AGACACGGAGACACAGAGCGAATT  995
      ||| | | ||||||||||||||| | |||  | ||||| |||||||||||
seq2  CACTTCCGGAAAGAGAGAGAGACTGTAGATCCTGAGACTCAGAGCGAATT  999

seq1  AG-AGGCTT-GATTTTT-AGGCAAGCAG-TTAG-AATGGAATAGAATTTT  1040
      || |||||| ||||||| |||||||||| |||| ||||||||||||||||
seq2  AGTAGGCTTGGATTTTTAAGGCAAGCAGTTTAGTAATGGAATAGAATTTT  1049

seq1  GGCATT-CCAGTGTG  1054
      | | || ||||||||
seq2  GTCTTTCCCAGTGTG  1064


seq1: chr10_101347005_101348019
seq2: B6Ng01-288F01.g_68_1084 (reverse)

seq1  TTTCTTTTATTG-AGATAGGGCCTCGTGTAGTGCAGGCTAGC-TTCCA-G  47
      ||||||| |||| |||||| |||||||||||||||||||||| ||||| |
seq2  TTTCTTTAATTGAAGATAGAGCCTCGTGTAGTGCAGGCTAGCATTCCAGG  50

seq1  TCTCCTAGATAGTTGATGCTATATTTAAATTT-CCGATCTTCCTCCTTTA  96
      ||||||||||||| |||||||||||||||||| |||||||||||||||||
seq2  TCTCCTAGATAGTGGATGCTATATTTAAATTTCCCGATCTTCCTCCTTTA  100

seq1  ACTTATT-AAGTACTGGGATTAAAAATATTTTGTATCACACCACACTGTA  145
      ||| ||| |||||||||||||||||||| |||||||||||||||||||||
seq2  ACTAATTAAAGTACTGGGATTAAAAATAATTTGTATCACACCACACTGTA  150

seq1  TCATACATCACCAGGCCCTGCAAATCTGTGATCTAATCAGATTCTTCCTT  195
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  TCATACATCACCAGGCCCTGCAAATCTGTGATCTAATCAGATTCTTCC--  198

seq1  TTTTTTTTTTTTTTTTTTTTGCCTATTCAGGAGTAGTAAAAAAATATAGC  245
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTTTTTTTTTTTTTTTTTTGCCTATTCAGGAGTAGTAAAAAAATATAGC  247

seq1  TCACATTCTTCATTTTACAGGCTGTAAGAGTTAGCATCCTGTTTGCTAAA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACATTCTTCATTTTACAGGCTGTAAGAGTTAGCATCCTGTTTGCTAAA  297

seq1  TTCCCATTAATTCATATCCTATTTCCACTTTCCCACTTGCCTCACTTTTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATTAATTCATATCCTATTTCCACTTTCCCACTTGCCTCACTTTTG  347

seq1  ATGCTGTTTTTCAATTTATCTCTCACTTTATTTTCAAATAAGTGAGGTAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTTTTTCAATTTATCTCTCACTTTATTTTCAAATAAGTGAGGTAC  397

seq1  ATAAATATTTCTAAGTTAATCCTTGCTACAATTCATTTTTTGCTTCTTTT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATTTCTAAGTTAATCCTTGCTACAATTCATTTTTTGCTTCTTTT  447

seq1  CATCAAGCCTTGATATTTTCTTAAATTAAAAATTATTAGTTATAATTTTC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAAGCCTTGATATTTTCTTAAATTAAAAATTATTAGTTATAATTTTC  497

seq1  TAAATTTACCTTTAATGATATTTGATACATATATAAAGTCACGTGATATA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTACCTTTAATGATATTTGATACATATATAAAGTCACGTGATATA  547

seq1  CAGTATACCTTGATTACAGAATACTTGAAATTCTACTGAAATTTAGATAT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATACCTTGATTACAGAATACTTGAAATTCTACTGAAATTTAGATAT  597

seq1  AAAAATATGATGTCTCTTTTCCTTCTTGCTATTTAGATTCTTCTAGGGAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATATGATGTCTCTTTTCCTTCTTGCTATTTAGATTCTTCTAGGGAT  647

seq1  AGTATGCTTGGGTCTCTGAAGCATTCTCAGTTAAAATGTTGAAAATGGAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCTTGGGTCTCTGAAGCATTCTCAGTTAAAATGTTGAAAATGGAT  697

seq1  TTGAGTGTGTGTCTCAAGAAAGTCATATTTCAAGACTATGCTTTTTGACA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGTGTGTCTCAAGAAAGTCATATTTCAAGACTATGCTTTTTGACA  747

seq1  GCTGTGAAATAACAGTGTAAATGTACTCTAACTCTGAAATATGACTCCTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAAATAACAGTGTAAATGTACTCTAACTCTGAAATATGACTCCTT  797

seq1  GCTTGTGGAAAGTGGGTCTTTTGTGATTCTGATGCATCTATAATAACTTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGTGGAAAGTGGGTCTTTTGTGATTCTGATGCATCTATAATAACTTT  847

seq1  GAGATCTCTGGTTATTCCTAATTAATTACGTCTCAGTCTTCTGTGTTAGA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTCTGGTTATTCCTAATTAATTACGTCTCAGTCTTCTGTGTTAGA  897

seq1  TTAATGGTCACACTTTTCAGACAATAAAATAAGATGATTAAAATATAAAA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGGTCACACTTTTCAGACAATAAAATAAGATGATTAAAATATAAAA  947

seq1  TATGGTGAAATATAAAAGCATGCTTCCTCTTATCATTATGTACTGGAAGA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTGAAATATAAAAGCATGCTTCCTCTTATCATTATGTACTGGAAGA  997

seq1  CTTTCTCTTTCTCTGAATTC  1015
      ||||||||||||||||||||
seq2  CTTTCTCTTTCTCTGAATTC  1017


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