BAC Information

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BAC

Clone NameB6Ng01-289F17
Chromosome1 (Build37)10 (Build37)
Map Location 74,477,361 - 74,478,30182,683,689 - 82,684,536
singlet/doubletsingletsinglet
Overlap geneVil1
Upstream geneLOC672208, LOC100043291, Tns1, Rufy4, Il8rb, Il8ra, Arpc2, Gpbar1, Aamp, Pnkd, Tmbim1, 2410125D13Rik, Gm216, Slc11a1, Ctdsp1
Downstream geneUsp37, Rqcd1, Plcd4, Zfp142, Bcs1l, Rnf25, Stk36, Ttll4, Cyp27a1, Prkag3, Wnt6, Wnt10a, LOC100042901, Cdk5r2, Fev, Cryba2, Ccdc108, Ihh, Nhej1, Slc23a3, 1810031K17Rik, BC038286, Zfand2b, Abcb6, Atg9a, D1Ertd161e, Stk16, Tuba4a, A630095N17Rik, Dnajb10, Ptprn, Resp18, Dnpep, Des, Speg, Gmppa, Accn4, D1Bwg1363e, A230078I05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-289F17.bB6Ng01-289F17.g
ACCGA086783GA086784
length9411,010
definitionB6Ng01-289F17.b B6Ng01-289F17.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(74,477,361 - 74,478,301)(82,683,689 - 82,684,536)
sequence
gaattcacagcctcatatcccaagcctacatgctaaacatatctccaata
agtagcagagagactgaaggagtcacaatcatcctacctggaggactatt
cctcaccatgactgtgcttagagacggcaccatttcccccagggcaagca
ggccatggcttaagttcatcagcccacctaagcctttcatttaaagcatg
cagaacctggagctgaggagacggctcaaaggatagatacttgctgtgtg
agcgttaggcctgaagtttagatccccgtcacacaaaaaaacatgccgag
tccacctgtaatagcacaccccggaagcaaagacaggaatcccagaggca
ggcaagccactaaaccagctgaaatggaaggctctggatttgcaaaatac
cctgcccaatcagggaagacattccatatcagcctctgacctccacacac
gaaagagcacacacaatgaaaaaacaaaaccacgcatgttcctaagagcc
aactcaaatggagccttgacatctgctaactttggttctagctttgattt
gtttgtttgtttgtttgttttgagtctcagtgtctctacctggtcatcct
gcctctgcctcctcagctgcctcctcggttctgcaattatagtcacgcac
cactatgcagagaaaaaaaatctgcattttaatatgctgcctcatgggtg
ctaaaaaatctgtttcactatgaaatggagtcagctgggcagtggtggca
cacgcctttaatcccagcacttgggaggcagaagcaggtggatttctgag
tttgaggccagcttggtctacggagtgaattccaggacagccagggctac
acagagaaacactgcctttaaaaaacaaaaaaagaaaaagaaatggcatt
gtatgctacacagcaaggacttccccaagaaaaggggagag
gaattccaaggtcagtgagaaaccctgtttcaaaaaataagacgaagagc
caagcatggcagcacacgaatttaaccccaggactcacttggaaggcaga
ggcatggcttcagtgatttcttggttgttttggttttgtttggggtatgt
ggttggttggttttaccttctggagttttctgtgctgtccaggcagatgt
gtgccccacccccacccccactgaggcccatgggctgtgtgtggccgagg
agagcaatggatgctggtttacacaacactctaaggcttccctaaacaca
agattttgtggttttttttgtagttagattgcatggcttgcggatgatat
catgttggagtagcaaaaggttggatgtgcctgtgtgtgtgcagatcatt
tcataagtctggattggatgaccccacctgtatgtacacatacgtggctg
catgtgagatggtaacattaggattctggaatccagcttcatctgtcagt
tcactgagggatgtgatgccaggtgagtggagacctttgtcccaaagcaa
aagaaaacctttctagaagcttttaaagactagtttcaaaatttccctca
tgtaggctgaactaaatggggctctcctgaacccctagttgctgggaaat
tacaagttatctgcagtaaagttcagacgaactttccaccccctgggaag
ggttggaccaggctccaggatttctctgtagacattgtcatttttatttg
aatagaaaggatttggaaagataactttattgttaaacaagcgaaagaga
tttacatttggaaagcagtctttgtttgaggaaatactttctacatattt
gctgtgtataatgtccttcccgctcttctctttactttcctcttctctga
tcattgtggtacacgctacttttaaggctttaatgtctttctacgttgta
tcagtcaggttctctagaatcacagaacgtatgcaatctctccctatatt
gagggaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr1_74477361_74478301
seq2: B6Ng01-289F17.b_47_987 (reverse)

seq1  CTCTTCCCTTTTCTTGTGGAAGTCCTTGCTGTGTAGCATACAATGCCATT  50
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  CTCTCCCCTTTTCTTGGGGAAGTCCTTGCTGTGTAGCATACAATGCCATT  50

seq1  TCTTTTTCTTTTTTTGTTTTTTAAAGGCAGGGTTTCTCTGTGTAGCCCTG  100
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCTTTTTCTTTTTTTGTTTTTTAAAGGCAGTGTTTCTCTGTGTAGCCCTG  100

seq1  GCTGTCCTGGAACTCACTCCGTAGACCAAGCTGGCCTCAAACTCAGAAAT  150
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCTGGAATTCACTCCGTAGACCAAGCTGGCCTCAAACTCAGAAAT  150

seq1  CCACCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCAC  200
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTGCTTCTGCCTCCCAAGTGCTGGGATTAAAGGCGTGTGCCACCAC  200

seq1  TGCCCAGCTGACTCCATTTCATAGTGAAACAGATTTTTTAGCACCCATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAGCTGACTCCATTTCATAGTGAAACAGATTTTTTAGCACCCATGA  250

seq1  GGCAGCATATTAAAATGCAGATTTTTTTTCTCGGCATAGTGGTGCGTGAC  300
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGCAGCATATTAAAATGCAGATTTTTTTTCTCTGCATAGTGGTGCGTGAC  300

seq1  TATAATTGCAGAACCGAGGAGGCAGCTGAGGAGGCAGAGGCAGGATGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTGCAGAACCGAGGAGGCAGCTGAGGAGGCAGAGGCAGGATGACC  350

seq1  AGGTAGAGACACTGAGACTCAAAACAAACAAACAAACAAACAAATCAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGAGACACTGAGACTCAAAACAAACAAACAAACAAACAAATCAAAG  400

seq1  CTAGAACCAAAGTTAGCAGATGTCAAGGCTCCATTTGAGTTGGCTCTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAACCAAAGTTAGCAGATGTCAAGGCTCCATTTGAGTTGGCTCTTAG  450

seq1  GAACATGCGTGGTTTTGTTTTTTCATTGTGTGTGCTCTTTCGTGTGTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATGCGTGGTTTTGTTTTTTCATTGTGTGTGCTCTTTCGTGTGTGGA  500

seq1  GGTCAGAGGCTGATATGGAATGTCTTCCCTGATTGGGCAGGGTATTTTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAGAGGCTGATATGGAATGTCTTCCCTGATTGGGCAGGGTATTTTGC  550

seq1  AAATCCAGAGCCTTCCATTTCAGCTGGTCTAGTGGCTTGCCTGCCTCTGG  600
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AAATCCAGAGCCTTCCATTTCAGCTGGTTTAGTGGCTTGCCTGCCTCTGG  600

seq1  GATTCCTGTCTTTGCTTCCGGGGTGTGCTATTACAGGTGGACTCGGCATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCCTGTCTTTGCTTCCGGGGTGTGCTATTACAGGTGGACTCGGCATG  650

seq1  TTTTTTTGTGTGACGGGGATCTAAACTTCAGGCCTAACGCTCACACAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTGTGACGGGGATCTAAACTTCAGGCCTAACGCTCACACAGCA  700

seq1  AGTATCTATCCTTTGAGCCGTCTCCTCAGCTCCAGGTTCTGCATGCTTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTATCCTTTGAGCCGTCTCCTCAGCTCCAGGTTCTGCATGCTTTA  750

seq1  AATGAAAGGCTTAGGTGGGCTGATGAACTTAAGCCATGGCCTGCTTGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAAGGCTTAGGTGGGCTGATGAACTTAAGCCATGGCCTGCTTGCCC  800

seq1  TGGGGGAAATGGTGCCGTCTCTAAGCACAGTCATGGTGAGGAATAGTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGGAAATGGTGCCGTCTCTAAGCACAGTCATGGTGAGGAATAGTCCT  850

seq1  CCAGGTAGGATGATTGTGACTCCTTCAGTCTCTCTGCTACTTATTGGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTAGGATGATTGTGACTCCTTCAGTCTCTCTGCTACTTATTGGAGA  900

seq1  TATGTTTAGCATGTAGGCTTGGGATATGAGGCTGTGAATTC  941
      |||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTAGCATGTAGGCTTGGGATATGAGGCTGTGAATTC  941

seq1: chr10_82683689_82684536
seq2: B6Ng01-289F17.g_229_1076

seq1  TTACCTTCTGGAGTTTTCTGTGCTGTCCAGGCAGATGTGTGCCCCACCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTCTGGAGTTTTCTGTGCTGTCCAGGCAGATGTGTGCCCCACCCC  50

seq1  CACCCCCACTGAGGCCCATGGGCTGTGTGTGGCCGAGGAGAGCAATGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCCACTGAGGCCCATGGGCTGTGTGTGGCCGAGGAGAGCAATGGAT  100

seq1  GCTGGTTTACACAACACTCTAAGGCTTCCCTAAACACAAGATTTTGTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTTTACACAACACTCTAAGGCTTCCCTAAACACAAGATTTTGTGGT  150

seq1  TTTTTTTGTAGTTAGATTGCATGGCTTGCGGATGATATCATGTTGGAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTGTAGTTAGATTGCATGGCTTGCGGATGATATCATGTTGGAGTA  200

seq1  GCAAAAGGTTGGATGTGCCTGTGTGTGTGCAGATCATTTCATAAGTCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAGGTTGGATGTGCCTGTGTGTGTGCAGATCATTTCATAAGTCTGG  250

seq1  ATTGGATGACCCCACCTGTATGTACACATACGTGGCTGCATGTGAGATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATGACCCCACCTGTATGTACACATACGTGGCTGCATGTGAGATGG  300

seq1  TAACATTAGGATTCTGGAATCCAGCTTCATCTGTCAGTTCACTGAGGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTAGGATTCTGGAATCCAGCTTCATCTGTCAGTTCACTGAGGGAT  350

seq1  GTGATGCCAGGTGAGTGGAGACCTTTGTCCCAAAGCAAAAGAAAACC-TT  399
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTGATGCCAGGTGAGTGGAGACCTTTGTCCCAAAGCAAAAGAAAACCTTT  400

seq1  CTAGAAGCTTTTAAAGACTAGTTTCAAAATTTCCCTCATGTAGGCTGAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGCTTTTAAAGACTAGTTTCAAAATTTCCCTCATGTAGGCTGAAC  450

seq1  TAAATGGGGCTCTCCTGAACCCCTAGTTGCTGGGAAATTACAAGTTATCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGGGCTCTCCTGAACCCCTAGTTGCTGGGAAATTACAAGTTATCT  500

seq1  GCAGTAAAGTTCAGACGAACTTTCCACCCCCTGGGAAGGGTTGGACCAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAAGTTCAGACGAACTTTCCACCCCCTGGGAAGGGTTGGACCAGG  550

seq1  CTCCAGGATTTCTCTGTAGACATTGTCATTTTTATTTGAATAGAAAGGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAGGATTTCTCTGTAGACATTGTCATTTTTATTTGAATAGAAAGGAT  600

seq1  TTGGAAGGATAACTTATTTGTTAAACAAGCGAAAAGAGATTTAACATTTG  649
      |||||| ||||||||  |||||||||||||| |||||||||| |||||||
seq2  TTGGAAAGATAACTTTATTGTTAAACAAGCG-AAAGAGATTT-ACATTTG  648

seq1  GAAAGCAGTCTTTGTTTGAGGAAATACTTTCTACATATTTGCTGTGTATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGTCTTTGTTTGAGGAAATACTTTCTACATATTTGCTGTGTATA  698

seq1  ATGTCCTTCCCGCTCTTCCTCTTTCCTTCCCTC-TCTCTGATCA-TGTGT  747
      ||||||||||||||||| |||||| ||| |||| |||||||||| |||| 
seq2  ATGTCCTTCCCGCTCTT-CTCTTTACTTTCCTCTTCTCTGATCATTGTGG  747

seq1  TCACA-GCTACTTTT-AGGCTTTAATGTCTTTCTACGTTGTATCAGTCAG  795
      | ||| ||||||||| ||||||||||||||||||||||||||||||||| 
seq2  T-ACACGCTACTTTTAAGGCTTTAATGTCTTTCTACGTTGTATCAGTCA-  795

seq1  GGTTCTCTAGAATCACAGAACTTATGCAATCTCTCCCTATATTGAGGAAA  845
      ||||||||||||||||||||| ||||||||||||||||||||||||| ||
seq2  GGTTCTCTAGAATCACAGAACGTATGCAATCTCTCCCTATATTGAGGGAA  845

seq1  TTT  848
      |||
seq2  TTT  848