BAC Information

Click to search

BAC

Clone NameB6Ng01-290N08
Chromosome10 (Build37)
Map Location 47,576,145 - 47,830,288
singlet/doubletdoublet
Overlap geneLOC100042398
Upstream geneLOC100041632, LOC668252, LOC100042387, LOC100041663
Downstream geneLOC546562, LOC100041689, Grik2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-290N08.bB6Ng01-290N08.g
ACCGA087875GA087876
length1,165374
definitionB6Ng01-290N08.b B6Ng01-290N08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,576,145 - 47,577,316)(47,829,915 - 47,830,288)
sequence
gaattcttcttttgggatgtggccaaaataggtttccatggcccaacatc
tatgcgcatatatgcagtagtcatagcaattagtgggttacaaataaaaa
caagtccataatgttatttacaatgacacaaataccgtgaatacaactaa
aatacattaatctctttccccgaagtgattaaataacaaaggaatgaaac
atgaatatatttttagcaaatgaggagaatgtgctcatgaaatttataac
cattgtttctgcaattatcacttgatatggatagtatttataatttacta
cttctttattcacttttcataatttccaatatctttaagatatgccttag
taactcaacttttttaaagtttcaagttgatcccgttttccatgtctaaa
cggtctgggccactgttaagtacaccagaatacaattcttgtagttctgc
attaagtttcttactgcgctcctctaaggatcttgtgtgttccagtccaa
atcgatcttgcctcccatgttgagtagcagtttgatttctctattcagtt
ataatcagtcatatcaaaaagattccagtcccttcttcattaattgactg
ggagacatgaggttcctaagtggatccagtcatttgaactgatttagtgg
agttattgcaggagctcctgggaaaacacattcttctctttagtttttaa
aaccagaagaccattgttcattgttggaataagtaaggagtttgctagct
ttcacagttagcaataccagtgttgtggcttccaattctactcatgacta
ctgaacacttgtcatacgtacattaggacaaagcatggaatcagaatcgc
atactgatacaaatacttctttaagttagactttttagagtcatcaagca
ccaagatgattcattaacaaaaagagagctactattcaatcaaacaaata
tcactgggaaaggcacatatgatagtggtgtaagatatgagcccacctgt
ctcataatatatataaaaatgaaatggcacagtttaaaaaaaagatatga
gcccaccaatgaataaaatggaacaaataaccacaaactttaaacttcag
tttgctatctgcatcatggtaagagtatactgaattgtctgaacaaggta
gccgagttatgatga

gaattctaggggggtcaagctttctttgggtgtgatttcattgggtaggg
ctgtagcacattgtcactcccaggctcagatctaaaatctcatttcaaat
gaggatcatcatttaatttttaagtatttcttatatatttgaaaggtaat
gagattatgccctcctctatttaaaataaatcaaataagtaaaatttaca
cccaaaaatcaaaatgttacaacaaggaatagtttaaaaaataagtaatg
aacagtggcttctctgtgatatactattgagtaagtctagaggcaaaaac
aaattttatatatatatatatatatatatatatatatatatatatatata
tataaaggaggataaagtatagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_47576145_47577316
seq2: B6Ng01-290N08.b_45_1209

seq1  GAATTCTTCTTTTGGGATGTGGCCAAAATAGGTTTCCATGGCCCAACATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTTTTGGGATGTGGCCAAAATAGGTTTCCATGGCCCAACATC  50

seq1  TATGCGCATATATGCAGTAGTCATAGCAATTAGTGGGTTACAAATAAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCGCATATATGCAGTAGTCATAGCAATTAGTGGGTTACAAATAAAAA  100

seq1  CAAGTCCATAATGTTATTTACAATGACACAAATACCGTGAATACAACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCCATAATGTTATTTACAATGACACAAATACCGTGAATACAACTAA  150

seq1  AATACATTAATCTCTTTCCCCGAAGTGATTAAATAACAAAGGAATGAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACATTAATCTCTTTCCCCGAAGTGATTAAATAACAAAGGAATGAAAC  200

seq1  ATGAATATATTTTTAGCAAATGAGGAGAATGTGCTCATGAAATTTATAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAATATATTTTTAGCAAATGAGGAGAATGTGCTCATGAAATTTATAAC  250

seq1  CATTGTTTCTGCAATTATCACTTGATATGGATAGTATTTATAATTTACTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTCTGCAATTATCACTTGATATGGATAGTATTTATAATTTACTA  300

seq1  CTTCTTTATTCACTTTTCATAATTTCCAATATCTTTAAGATATGCCTTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTATTCACTTTTCATAATTTCCAATATCTTTAAGATATGCCTTAG  350

seq1  TAACTCAACTTTTTTAAAGTTTCAAGTTGATCCCGTTTTCCATGTCTAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCAACTTTTTTAAAGTTTCAAGTTGATCCCGTTTTCCATGTCTAAA  400

seq1  CGGTCTGGGCCACTGTTAAGTACACCAGAATACAATTCTTGTAGTTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTCTGGGCCACTGTTAAGTACACCAGAATACAATTCTTGTAGTTCTGC  450

seq1  ATTAAGTTTCTTACTGCGCTCCTCTAAGGATCTTGTGTGTTCCAGTCCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGTTTCTTACTGCGCTCCTCTAAGGATCTTGTGTGTTCCAGTCCAA  500

seq1  ATCGATCTTGCCTCCCATGTTGAGTAGCAGTTTGATTTCTCTATTCAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGATCTTGCCTCCCATGTTGAGTAGCAGTTTGATTTCTCTATTCAGTT  550

seq1  ATAATCAGTCATATCAAAAAGATTCCAGTCCCTTCTTCATTAATTGACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAGTCATATCAAAAAGATTCCAGTCCCTTCTTCATTAATTGACTG  600

seq1  GGAGACATGAGGTTCCTAAGTGGATCCAGTCATTTGAACTGATTTAGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACATGAGGTTCCTAAGTGGATCCAGTCATTTGAACTGATTTAGTGG  650

seq1  AGTTATTGCAGGAGCTCCTGGGAAAACACATTCTTCTCTTTAGTTTTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTGCAGGAGCTCCTGGGAAAACACATTCTTCTCTTTAGTTTTTAA  700

seq1  AACCAGAAGACCATTGTTCATTGTTGGAATAAGTAAGGAGTTTGCTAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGAAGACCATTGTTCATTGTTGGAATAAGTAAGGAGTTTGCTAGCT  750

seq1  TTCACAGTTAGCAATACCAGTGTTGTGGCTTCCAATTCTACTCATGACTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAGTTAGCAATACCAGTGTTGTGGCTTCCAATTCTACTCATGACTA  800

seq1  CTGAACACTTGTCATACGTACATTAGGACAAAGCATGGAATCAGAATCGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACACTTGTCATACGTACATTAGGACAAAGCATGGAATCAGAATCGC  850

seq1  ATACTGATACAAATACTTCTTTAAGTTAGACTTTTTAGAGTCATCAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGATACAAATACTTCTTTAAGTTAGACTTTTTAGAGTCATCAAGCA  900

seq1  CCAAGATGATTCATTAACAAAAAGAGAGCTACTATTCAATCAAACAAATA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATGATTCATTAACAAAAAGAGAGCTACTATTCAATCAAACAAATA  950

seq1  TCACTGGGAAAGGCACATATGATAGTGGTGTAAGATATGAGCCCACCTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGGAAAGGCACATATGATAGTGGTGTAAGATATGAGCCCACCTGT  1000

seq1  CTCATAATATATATTAAAAAATGAAATGGCACAG-TTAAAAAAAAGATAT  1049
      ||||||||||||||  |||||||||||||||||| |||||||||||||||
seq2  CTCATAATATATAT--AAAAATGAAATGGCACAGTTTAAAAAAAAGATAT  1048

seq1  GAGCCCACCAATGAAATAAAAT-GAACAAATAAACACAAAC-TTAAACTT  1097
      ||||||||||||| |||||||| |||||||||| ||||||| ||||||||
seq2  GAGCCCACCAATG-AATAAAATGGAACAAATAACCACAAACTTTAAACTT  1097

seq1  CAGGTTTGCTTAATCTGCAATCAT-GTTAGAGTATACCTGATTGTCTGAA  1146
      || |||||||  |||||| ||||| || |||||||||   ||||||||||
seq2  CA-GTTTGCT--ATCTGC-ATCATGGTAAGAGTATACTGAATTGTCTGAA  1143

seq1  ACAAAGGTAGCCAGAGTATATGATGA  1172
         ||||||||| |||| ||||||||
seq2  --CAAGGTAGCC-GAGT-TATGATGA  1165


seq1: chr10_47829915_47830288
seq2: B6Ng01-290N08.g_69_442 (reverse)

seq1  ATCTATACTTTATCCTCCTTTATATATATATATATATATATATATATATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATACTTTATCCTCCTTTATATATATATATATATATATATATATATA  50

seq1  TATATATATATATATATAAAATTTGTTTTTGCCTCTAGACTTACTCAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATATATATATATAAAATTTGTTTTTGCCTCTAGACTTACTCAATA  100

seq1  GTATATCACAGAGAAGCCACTGTTCATTACTTATTTTTTAAACTATTCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATCACAGAGAAGCCACTGTTCATTACTTATTTTTTAAACTATTCCT  150

seq1  TGTTGTAACATTTTGATTTTTGGGTGTAAATTTTACTTATTTGATTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTAACATTTTGATTTTTGGGTGTAAATTTTACTTATTTGATTTATT  200

seq1  TTAAATAGAGGAGGGCATAATCTCATTACCTTTCAAATATATAAGAAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATAGAGGAGGGCATAATCTCATTACCTTTCAAATATATAAGAAATA  250

seq1  CTTAAAAATTAAATGATGATCCTCATTTGAAATGAGATTTTAGATCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAAATTAAATGATGATCCTCATTTGAAATGAGATTTTAGATCTGAG  300

seq1  CCTGGGAGTGACAATGTGCTACAGCCCTACCCAATGAAATCACACCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAGTGACAATGTGCTACAGCCCTACCCAATGAAATCACACCCAAA  350

seq1  GAAAGCTTGACCCCCCTAGAATTC  374
      ||||||||||||||||||||||||
seq2  GAAAGCTTGACCCCCCTAGAATTC  374


| Home | SequenceCutter | Blast | Download |