BAC Information

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BAC

Clone NameB6Ng01-292M03
Chromosome10 (Build37)
Map Location 78,567,237 - 78,568,366
singlet/doubletsinglet
Overlap genenone
Upstream geneD10Jhu81e, Pwp2, Tmem1, Agpat3, LOC100041500, Rrp1, Cstb, Pdxk, EG665862, Olfr1358, LOC546482, Ilvbl, Syde1, Olfr1357, LOC665890, Casp14, Ccdc105, Slc1a6, Olfr1356, GA_x5J8B7W4DUT-12263-11330, GA_x5J8B7TPDN2-1058-1265, Olfr233-ps1, Olfr8, GA_x5J8B7TNKDU-1250-1574, Olfr1353, Olfr1352, Olfr1351, Olfr57, 2610008E11Rik
Downstream geneEG624765, AJ543404, LOC100041709, EG624845, EG625029, Ppap2c, Mier2, Theg, 4932409I22Rik, Shc2, Gm1157, Madcam1, Gtrgeo22, Cdc34, Gzmm, Bsg, Hcn2, Polrmt, Fgf22, Rnf126, Fstl3, Prssl1, Palm, 9130017N09Rik, Ptbp1, BC005764, Prtn3, Ela2, Cfd, Thrap5, C030046I01Rik, Kiss1r, Arid3a, Wdr18, Grin3b, ORF61, Cnn2, Abca7, Hmha1, Polr2e, Gpx4, Sbno2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-292M03.bB6Ng01-292M03.g
ACCGA089314GA089315
length1,2321,109
definitionB6Ng01-292M03.b B6Ng01-292M03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgtttagctatgagccccattttttaatggggttatttgatt
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcaaaagctttgcaatttta
tgaggtcctatttgtcaattctcgatcttaaagcacaagccattgctgtt
ctattcaggaatttttctcctgtgcccatatctttgaggcttttccccac
tttctcctctataagtttcactgtctctggttttctgtggagttccttga
tccacttagatttgatcttagtacaaggagataggaatggatcaatttgc
attcttccacatgataaccaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgttgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccatttg
tctacttatctgtcagtataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttattatcctaggttttttgttattccagatg
aatttacagattgccctttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcattggatatctttccatctt
ctgagatcttcttttaatttctttcttcagagacttaagtttttatcata
cagatctttcacttccttagttaggagtcacgccgagatattttatatta
ttggtgactatggagaatggttgttgtttccctaattttcttttctcagg
cctgtttattctttgtttagaagaaaggccattgacttggtttgagttta
tttttatatctaccctactcattggaagctgtttattcaggtttttggag
ctctctggtggaaatttttacgtcacattatatatactctcatgtgccat
tcgcaaaagggcattttgaacttcatctttaccattggtatatcccttgg
atctctccattggtggttcctacacaatcgtc
gaattcaagtcatcaggcttgctgtcagatgccatcttgcctgtctggaa
gatgttatttaaatgaatatatattagagcaatgaagtggttgctagata
agacactgctcgactctacctttaggaaaggtattgtggcctagttggta
ggcatgtagactgatgacagcctccagtaggctagacacagaataacagc
tagggataggaggctgtggctgttttcatctccacgagtcctctttggag
aatgtgcttctatgggccattggtcttctgtccaatggggttccctgttt
tttgtttgtttgtttgtttgtttgtttgttttgaagatgctgcgctgaat
caggttttgtccccataataatataagtttgatttccaaagatgacaact
tctaacctgcttggaagtctcagctgtgcctcttaggtctccatctcatt
catctaagtttcatccactgggctttcatcatataatgactgagaattaa
aatataaaagcagagatttaatgaatcagcagtcaagtttctggcacagt
ttcttggcaggacagaatcgttcagcatcttcaccctcctctgtaaagat
ataggctctggtgtcaggtagatctgggactatctgtctctattctgccc
tgtgatacaagattctctggaagcaactcctcttccccaagaaaggctag
gctgggcatggaaagccctgagaagtctgtcatgctccttcctcaggaca
ctcagtagacagctggagtcatgatacccctggagtgataaatgagcagg
agtcttcctagaaaagcaagactgactttcagagagctcaggttgtaacc
tatgctggaagttccaaactaggaactctggcgagcttctgtaggttcac
agctgataaaaaggggacgcttgatcatcttgtcagctagagaggaggga
aaggaatcaggagacgctctggccaagcagatgatacacagcttcatcca
cacacaggagtccagacaagatgactgcaatgaattccagaacttatgtc
actagtattatcaatttcctatggtcctagaatcaatatgtagccttagt
cctggaatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_78567237_78568366
seq2: B6Ng01-292M03.g_64_1172 (reverse)

seq1  AATTCCAGCACATTTAATCTCAGACTAA-GCTACATATTGAATTCTAGGA  49
      ||||||||              |||||| ||||||||||| |||||||||
seq2  AATTCCAG--------------GACTAAGGCTACATATTG-ATTCTAGGA  35

seq1  CCATAGG-AATTGATAATACTAGGTTGACATA--GTCTGGAATTCATTGC  96
      ||||||| |||||||||||||||  |||||||   |||||||||||||||
seq2  CCATAGGAAATTGATAATACTAG--TGACATAAGTTCTGGAATTCATTGC  83

seq1  AGTCATCTTGTCTTGGACTCCTGTGTGTTGGGATGAAAGCTGTGTATCAT  146
      |||||||||||| |||||||||||||||  ||||| ||||||||||||||
seq2  AGTCATCTTGTC-TGGACTCCTGTGTGT--GGATG-AAGCTGTGTATCAT  129

seq1  CTTGCTTGGCCAGAGCCGTCTCCCTGATTCCTTTCCCCTCCTCTCTAGCT  196
      | ||||||||||||| ||||| |||||||||||| |||||||||||||||
seq2  C-TGCTTGGCCAGAG-CGTCT-CCTGATTCCTTT-CCCTCCTCTCTAGCT  175

seq1  GACAAGATGATCAAGCGTCCCCTTTTTATCAGCTGTGAACCTACAGAAGC  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGATGATCAAGCGTCCCCTTTTTATCAGCTGTGAACCTACAGAAGC  225

seq1  TCGCCAGAGTTCCTAGTTTGGAACTTCCAGCATAGGTTACAACCTGAGCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGCCAGAGTTCCTAGTTTGGAACTTCCAGCATAGGTTACAACCTGAGCT  275

seq1  CTCTGAAAGTCAGTCTTGCTTTTCTAGGAAGACTCCTGCTCATTTATCAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAAGTCAGTCTTGCTTTTCTAGGAAGACTCCTGCTCATTTATCAC  325

seq1  TCCAGGGGTATCATGACTCCAGCTGTCTACTGAGTGTCCTGAGGAAGGAG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGGTATCATGACTCCAGCTGTCTACTGAGTGTCCTGAGGAAGGAG  375

seq1  CATGACAGACTTCTCAGGGCTTTCCATGCCCAGCCTAGCCTTTCTTGGGG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAGACTTCTCAGGGCTTTCCATGCCCAGCCTAGCCTTTCTTGGGG  425

seq1  AAGAGGAGTTGCTTCCAGAGAATCTTGTATCACAGGGCAGAATAGAGACA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAGTTGCTTCCAGAGAATCTTGTATCACAGGGCAGAATAGAGACA  475

seq1  GATAGTCCCAGATCTACCTGACACCAGAGCCTATATCTTTACAGAGGAGG  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCCCAGATCTACCTGACACCAGAGCCTATATCTTTACAGAGGAGG  525

seq1  GTGAAGATGCTGAACGATTCTGTCCTGCCAAGAAACTGTGCCAGAAACTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGATGCTGAACGATTCTGTCCTGCCAAGAAACTGTGCCAGAAACTT  575

seq1  GACTGCTGATTCATTAAATCTCTGCTTTTATATTTTAATTCTCAGTCATT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTGATTCATTAAATCTCTGCTTTTATATTTTAATTCTCAGTCATT  625

seq1  ATATGATGAAAGCCCAGTGGATGAAACTTAGATGAATGAGATGGAGACCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATGAAAGCCCAGTGGATGAAACTTAGATGAATGAGATGGAGACCT  675

seq1  AAGAGGCACAGCTGAGACTTCCAAGCAGGTTAGAAGTTGTCATCTTTGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGCACAGCTGAGACTTCCAAGCAGGTTAGAAGTTGTCATCTTTGGA  725

seq1  AATCAAACTTATATTATTATGGGGACAAAACCTGATTCAGCGCAGCATCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACTTATATTATTATGGGGACAAAACCTGATTCAGCGCAGCATCT  775

seq1  TCAAAACAAACAAACAAACAAACAAACAAACAAAAAACAGGGAACCCCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAACAAACAAACAAACAAACAAACAAACAAAAAACAGGGAACCCCAT  825

seq1  TGGACAGAAGACCAATGGCCCATAGAAGCACATTCTCCAAAGAGGACTCG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAGAAGACCAATGGCCCATAGAAGCACATTCTCCAAAGAGGACTCG  875

seq1  TGGAGATGAAAACAGCCACAGCCTCCTATCCCTAGCTGTTATTCTGTGTC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATGAAAACAGCCACAGCCTCCTATCCCTAGCTGTTATTCTGTGTC  925

seq1  TAGCCTACTGGAGGCTGTCATCAGTCTACATGCCTACCAACTAGGCCACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTACTGGAGGCTGTCATCAGTCTACATGCCTACCAACTAGGCCACA  975

seq1  ATACCTTTCCTAAAGGTAGAGTCGAGCAGTGTCTTATCTAGCAACCACTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTTCCTAAAGGTAGAGTCGAGCAGTGTCTTATCTAGCAACCACTT  1025

seq1  CATTGCTCTAATATATATTCATTTAAATAACATCTTCCAGACAGGCAAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTCTAATATATATTCATTTAAATAACATCTTCCAGACAGGCAAGA  1075

seq1  TGGCATCTGACAGCAAGCCTGATGACTTGAATTC  1130
      ||||||||||||||||||||||||||||||||||
seq2  TGGCATCTGACAGCAAGCCTGATGACTTGAATTC  1109